Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4441.1 and Xcc-8004.4442.1 are separated by 132 nucleotides Xcc-8004.4442.1 and Xcc-8004.4443.1 are separated by 207 nucleotides Xcc-8004.4443.1 and Xcc-8004.4444.1 overlap by 28 nucleotides
Xcc-8004.4441.1: Xcc-8004.4441.1 - Tyrosine recombinase XerD, at 4,257,574 to 4,258,545
Xcc-8004.4441.1
Xcc-8004.4442.1: Xcc-8004.4442.1 - FIG01212138: hypothetical protein, at 4,258,678 to 4,259,100
Xcc-8004.4442.1
Xcc-8004.4443.1: Xcc-8004.4443.1 - putative; ORF located using Glimmer/Genemark, at 4,259,308 to 4,259,667
Xcc-8004.4443.1
Xcc-8004.4444.1: Xcc-8004.4444.1 - FIG000906: Predicted Permease, at 4,259,640 to 4,260,746
Xcc-8004.4444.1
Position (kb) 4258
4259
4260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4257.782 kb on + strand, within Xcc-8004.4441.1 at 4257.782 kb on + strand, within Xcc-8004.4441.1 at 4257.783 kb on - strand, within Xcc-8004.4441.1 at 4257.914 kb on + strand, within Xcc-8004.4441.1 at 4257.914 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.062 kb on - strand, within Xcc-8004.4441.1 at 4258.062 kb on - strand, within Xcc-8004.4441.1 at 4258.241 kb on + strand, within Xcc-8004.4441.1 at 4258.242 kb on - strand, within Xcc-8004.4441.1 at 4258.242 kb on - strand, within Xcc-8004.4441.1 at 4258.289 kb on + strand, within Xcc-8004.4441.1 at 4258.556 kb on + strand at 4258.556 kb on + strand at 4258.557 kb on - strand at 4258.620 kb on + strand at 4258.705 kb on + strand at 4258.705 kb on + strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.731 kb on - strand, within Xcc-8004.4442.1 at 4258.731 kb on - strand, within Xcc-8004.4442.1 at 4258.861 kb on + strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.966 kb on + strand, within Xcc-8004.4442.1 at 4258.967 kb on - strand, within Xcc-8004.4442.1 at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.123 kb on - strand at 4259.123 kb on - strand at 4259.123 kb on - strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.190 kb on + strand at 4259.190 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.382 kb on + strand, within Xcc-8004.4443.1 at 4259.382 kb on + strand, within Xcc-8004.4443.1 at 4259.383 kb on - strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.509 kb on + strand, within Xcc-8004.4443.1 at 4259.510 kb on - strand, within Xcc-8004.4443.1 at 4259.510 kb on - strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.592 kb on - strand, within Xcc-8004.4443.1 at 4259.592 kb on - strand, within Xcc-8004.4443.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,257,782 + Xcc-8004.4441.1 0.21 +0.8 4,257,782 + Xcc-8004.4441.1 0.21 +1.4 4,257,783 - Xcc-8004.4441.1 0.22 +0.9 4,257,914 + Xcc-8004.4441.1 0.35 -0.3 4,257,914 + Xcc-8004.4441.1 0.35 +0.8 4,258,061 + Xcc-8004.4441.1 0.50 +1.4 4,258,061 + Xcc-8004.4441.1 0.50 -2.5 4,258,061 + Xcc-8004.4441.1 0.50 +0.4 4,258,062 - Xcc-8004.4441.1 0.50 +0.8 4,258,062 - Xcc-8004.4441.1 0.50 -1.3 4,258,241 + Xcc-8004.4441.1 0.69 -1.3 4,258,242 - Xcc-8004.4441.1 0.69 -1.4 4,258,242 - Xcc-8004.4441.1 0.69 +0.1 4,258,289 + Xcc-8004.4441.1 0.74 -0.2 4,258,556 + -0.9 4,258,556 + +1.8 4,258,557 - -0.6 4,258,620 + +0.5 4,258,705 + -2.8 4,258,705 + +1.6 4,258,706 - +0.7 4,258,706 - +1.7 4,258,706 - +0.3 4,258,706 - -2.1 4,258,706 - +1.4 4,258,731 - Xcc-8004.4442.1 0.13 +2.1 4,258,731 - Xcc-8004.4442.1 0.13 +0.4 4,258,861 + Xcc-8004.4442.1 0.43 -1.1 4,258,862 - Xcc-8004.4442.1 0.43 +0.8 4,258,862 - Xcc-8004.4442.1 0.43 -2.5 4,258,862 - Xcc-8004.4442.1 0.43 +0.8 4,258,862 - Xcc-8004.4442.1 0.43 +0.2 4,258,966 + Xcc-8004.4442.1 0.68 +2.0 4,258,967 - Xcc-8004.4442.1 0.68 +1.5 4,259,122 + +0.2 4,259,122 + -1.1 4,259,122 + +1.1 4,259,122 + -1.2 4,259,122 + +1.4 4,259,123 - -0.8 4,259,123 - -0.4 4,259,123 - +1.3 4,259,174 + +0.4 4,259,174 + -1.5 4,259,174 + +0.5 4,259,174 + -0.5 4,259,174 + -1.9 4,259,174 + -0.8 4,259,174 + +3.4 4,259,174 + +1.2 4,259,175 - +1.4 4,259,175 - -1.0 4,259,175 - -2.4 4,259,175 - -0.6 4,259,175 - +1.6 4,259,175 - +1.0 4,259,175 - +1.3 4,259,175 - +1.8 4,259,176 + -0.6 4,259,176 + -2.9 4,259,176 + +2.1 4,259,176 + +0.8 4,259,176 + +0.8 4,259,176 + -0.2 4,259,176 + +2.3 4,259,177 - -2.1 4,259,177 - +0.1 4,259,177 - -0.6 4,259,177 - -0.1 4,259,177 - -1.6 4,259,177 - +2.4 4,259,177 - -1.3 4,259,190 + -0.2 4,259,190 + -0.7 4,259,309 + -0.6 4,259,309 + -0.6 4,259,309 + -0.3 4,259,309 + -0.6 4,259,309 + -0.3 4,259,309 + -2.3 4,259,309 + -2.8 4,259,309 + -1.4 4,259,310 - +1.9 4,259,310 - -0.9 4,259,310 - +1.1 4,259,310 - -0.4 4,259,310 - -0.7 4,259,310 - -1.4 4,259,310 - -2.1 4,259,310 - +1.1 4,259,310 - +0.3 4,259,310 - +0.1 4,259,382 + Xcc-8004.4443.1 0.21 -0.4 4,259,382 + Xcc-8004.4443.1 0.21 +0.3 4,259,383 - Xcc-8004.4443.1 0.21 -0.2 4,259,393 + Xcc-8004.4443.1 0.24 -0.6 4,259,393 + Xcc-8004.4443.1 0.24 -1.4 4,259,393 + Xcc-8004.4443.1 0.24 -0.5 4,259,394 - Xcc-8004.4443.1 0.24 +0.5 4,259,394 - Xcc-8004.4443.1 0.24 -0.7 4,259,394 - Xcc-8004.4443.1 0.24 +0.8 4,259,394 - Xcc-8004.4443.1 0.24 +3.2 4,259,429 + Xcc-8004.4443.1 0.34 +0.4 4,259,429 + Xcc-8004.4443.1 0.34 +0.5 4,259,429 + Xcc-8004.4443.1 0.34 -1.1 4,259,429 + Xcc-8004.4443.1 0.34 -0.5 4,259,429 + Xcc-8004.4443.1 0.34 +0.4 4,259,429 + Xcc-8004.4443.1 0.34 +1.0 4,259,429 + Xcc-8004.4443.1 0.34 -1.2 4,259,429 + Xcc-8004.4443.1 0.34 +1.4 4,259,429 + Xcc-8004.4443.1 0.34 +0.7 4,259,429 + Xcc-8004.4443.1 0.34 -1.7 4,259,429 + Xcc-8004.4443.1 0.34 +1.4 4,259,429 + Xcc-8004.4443.1 0.34 -1.8 4,259,429 + Xcc-8004.4443.1 0.34 +1.1 4,259,430 - Xcc-8004.4443.1 0.34 -2.1 4,259,430 - Xcc-8004.4443.1 0.34 +1.8 4,259,430 - Xcc-8004.4443.1 0.34 -1.6 4,259,430 - Xcc-8004.4443.1 0.34 +2.0 4,259,430 - Xcc-8004.4443.1 0.34 +0.2 4,259,430 - Xcc-8004.4443.1 0.34 -0.1 4,259,430 - Xcc-8004.4443.1 0.34 -1.8 4,259,430 - Xcc-8004.4443.1 0.34 -0.3 4,259,430 - Xcc-8004.4443.1 0.34 +2.4 4,259,509 + Xcc-8004.4443.1 0.56 +2.4 4,259,510 - Xcc-8004.4443.1 0.56 +2.2 4,259,510 - Xcc-8004.4443.1 0.56 -0.5 4,259,591 + Xcc-8004.4443.1 0.79 +2.4 4,259,591 + Xcc-8004.4443.1 0.79 +3.6 4,259,591 + Xcc-8004.4443.1 0.79 -0.6 4,259,592 - Xcc-8004.4443.1 0.79 -0.4 4,259,592 - Xcc-8004.4443.1 0.79 +2.3
Or see this region's nucleotide sequence