Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4428.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4426.1 and Xcc-8004.4427.1 overlap by 4 nucleotidesXcc-8004.4427.1 and Xcc-8004.4428.1 overlap by 1 nucleotidesXcc-8004.4428.1 and Xcc-8004.4429.1 overlap by 4 nucleotidesXcc-8004.4429.1 and Xcc-8004.4430.1 are separated by 10 nucleotides Xcc-8004.4426.1: Xcc-8004.4426.1 - General secretion pathway protein K, at 4,235,153 to 4,236,004 Xcc-8004.4426.1 Xcc-8004.4427.1: Xcc-8004.4427.1 - General secretion pathway protein J, at 4,236,001 to 4,236,636 Xcc-8004.4427.1 Xcc-8004.4428.1: Xcc-8004.4428.1 - General secretion pathway protein I, at 4,236,636 to 4,237,052 Xcc-8004.4428.1 Xcc-8004.4429.1: Xcc-8004.4429.1 - General secretion pathway protein H, at 4,237,049 to 4,237,558 Xcc-8004.4429.1 Xcc-8004.4430.1: Xcc-8004.4430.1 - General secretion pathway protein G, at 4,237,569 to 4,238,000 Xcc-8004.4430.1 Position (kb) 4236 4237 4238Strain fitness (log2 ratio) -3 -2 -1 0 1at 4235.839 kb on - strand, within Xcc-8004.4426.1at 4235.860 kb on - strand, within Xcc-8004.4426.1at 4236.323 kb on + strand, within Xcc-8004.4427.1at 4236.324 kb on - strand, within Xcc-8004.4427.1at 4236.324 kb on - strand, within Xcc-8004.4427.1at 4236.687 kb on + strand, within Xcc-8004.4428.1at 4236.687 kb on + strand, within Xcc-8004.4428.1at 4236.688 kb on - strand, within Xcc-8004.4428.1at 4237.132 kb on + strand, within Xcc-8004.4429.1at 4237.133 kb on - strand, within Xcc-8004.4429.1at 4237.133 kb on - strand, within Xcc-8004.4429.1at 4237.133 kb on - strand, within Xcc-8004.4429.1at 4237.133 kb on - strand, within Xcc-8004.4429.1at 4237.133 kb on - strand, within Xcc-8004.4429.1at 4237.351 kb on - strand, within Xcc-8004.4429.1at 4237.571 kb on - strandat 4237.571 kb on - strandat 4237.576 kb on + strandat 4237.577 kb on - strandat 4237.594 kb on + strandat 4237.594 kb on + strandat 4237.595 kb on - strandat 4237.669 kb on + strand, within Xcc-8004.4430.1at 4237.784 kb on + strand, within Xcc-8004.4430.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,235,839 - Xcc-8004.4426.1 0.81 -0.6
4,235,860 - Xcc-8004.4426.1 0.83 +0.4
4,236,323 + Xcc-8004.4427.1 0.51 -1.7
4,236,324 - Xcc-8004.4427.1 0.51 -0.6
4,236,324 - Xcc-8004.4427.1 0.51 -0.5
4,236,687 + Xcc-8004.4428.1 0.12 -1.2
4,236,687 + Xcc-8004.4428.1 0.12 -1.8
4,236,688 - Xcc-8004.4428.1 0.12 -2.1
4,237,132 + Xcc-8004.4429.1 0.16 +0.1
4,237,133 - Xcc-8004.4429.1 0.16 -1.1
4,237,133 - Xcc-8004.4429.1 0.16 -0.5
4,237,133 - Xcc-8004.4429.1 0.16 +1.2
4,237,133 - Xcc-8004.4429.1 0.16 +0.6
4,237,133 - Xcc-8004.4429.1 0.16 +1.2
4,237,351 - Xcc-8004.4429.1 0.59 -1.7
4,237,571 - -0.9
4,237,571 - +0.1
4,237,576 + -3.1
4,237,577 - -0.9
4,237,594 + -0.9
4,237,594 + +0.5
4,237,595 - -1.5
4,237,669 + Xcc-8004.4430.1 0.23 +0.7
4,237,784 + Xcc-8004.4430.1 0.50 +0.5

Or see this region's nucleotide sequence