Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4425.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4423.1 and Xcc-8004.4424.1 overlap by 11 nucleotidesXcc-8004.4424.1 and Xcc-8004.4425.1 overlap by 17 nucleotidesXcc-8004.4425.1 and Xcc-8004.4426.1 overlap by 4 nucleotidesXcc-8004.4426.1 and Xcc-8004.4427.1 overlap by 4 nucleotides Xcc-8004.4423.1: Xcc-8004.4423.1 - General secretion pathway protein N, at 4,232,635 to 4,233,420 Xcc-8004.4423.1 Xcc-8004.4424.1: Xcc-8004.4424.1 - General secretion pathway protein M, at 4,233,410 to 4,234,051 Xcc-8004.4424.1 Xcc-8004.4425.1: Xcc-8004.4425.1 - General secretion pathway protein L, at 4,234,035 to 4,235,156 Xcc-8004.4425.1 Xcc-8004.4426.1: Xcc-8004.4426.1 - General secretion pathway protein K, at 4,235,153 to 4,236,004 Xcc-8004.4426.1 Xcc-8004.4427.1: Xcc-8004.4427.1 - General secretion pathway protein J, at 4,236,001 to 4,236,636 Xcc-8004.4427.1 Position (kb) 4234 4235 4236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4233.227 kb on + strand, within Xcc-8004.4423.1at 4233.490 kb on - strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4234.036 kb on + strandat 4234.037 kb on - strandat 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.738 kb on + strand, within Xcc-8004.4425.1at 4234.738 kb on + strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4235.007 kb on + strand, within Xcc-8004.4425.1at 4235.008 kb on - strand, within Xcc-8004.4425.1at 4235.008 kb on - strand, within Xcc-8004.4425.1at 4235.138 kb on + strandat 4235.193 kb on + strandat 4235.193 kb on + strandat 4235.285 kb on - strand, within Xcc-8004.4426.1at 4235.285 kb on - strand, within Xcc-8004.4426.1at 4235.287 kb on + strand, within Xcc-8004.4426.1at 4235.287 kb on + strand, within Xcc-8004.4426.1at 4235.287 kb on + strand, within Xcc-8004.4426.1at 4235.287 kb on + strand, within Xcc-8004.4426.1at 4235.287 kb on + strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.288 kb on - strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.289 kb on + strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.290 kb on - strand, within Xcc-8004.4426.1at 4235.436 kb on + strand, within Xcc-8004.4426.1at 4235.436 kb on + strand, within Xcc-8004.4426.1at 4235.437 kb on - strand, within Xcc-8004.4426.1at 4235.437 kb on - strand, within Xcc-8004.4426.1at 4235.437 kb on - strand, within Xcc-8004.4426.1at 4235.466 kb on + strand, within Xcc-8004.4426.1at 4235.466 kb on + strand, within Xcc-8004.4426.1at 4235.539 kb on - strand, within Xcc-8004.4426.1at 4235.559 kb on + strand, within Xcc-8004.4426.1at 4235.839 kb on - strand, within Xcc-8004.4426.1at 4235.860 kb on - strand, within Xcc-8004.4426.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,233,227 + Xcc-8004.4423.1 0.75 -1.4
4,233,490 - Xcc-8004.4424.1 0.12 -1.8
4,233,549 + Xcc-8004.4424.1 0.22 -0.3
4,233,549 + Xcc-8004.4424.1 0.22 +3.0
4,233,612 + Xcc-8004.4424.1 0.31 -1.5
4,233,612 + Xcc-8004.4424.1 0.31 -0.9
4,233,612 + Xcc-8004.4424.1 0.31 +0.2
4,233,612 + Xcc-8004.4424.1 0.31 +0.1
4,233,612 + Xcc-8004.4424.1 0.31 -1.1
4,233,613 - Xcc-8004.4424.1 0.32 -1.9
4,233,613 - Xcc-8004.4424.1 0.32 -2.3
4,233,613 - Xcc-8004.4424.1 0.32 +0.6
4,233,613 - Xcc-8004.4424.1 0.32 -1.0
4,233,613 - Xcc-8004.4424.1 0.32 -1.2
4,233,613 - Xcc-8004.4424.1 0.32 -1.6
4,233,613 - Xcc-8004.4424.1 0.32 -1.5
4,233,981 + Xcc-8004.4424.1 0.89 -0.8
4,233,981 + Xcc-8004.4424.1 0.89 -1.4
4,233,981 + Xcc-8004.4424.1 0.89 -2.2
4,233,981 + Xcc-8004.4424.1 0.89 -0.5
4,233,981 + Xcc-8004.4424.1 0.89 -1.7
4,233,982 - Xcc-8004.4424.1 0.89 -0.4
4,233,982 - Xcc-8004.4424.1 0.89 -1.3
4,234,036 + +1.2
4,234,037 - +2.3
4,234,258 + Xcc-8004.4425.1 0.20 +0.5
4,234,258 + Xcc-8004.4425.1 0.20 +1.4
4,234,258 + Xcc-8004.4425.1 0.20 +2.1
4,234,258 + Xcc-8004.4425.1 0.20 -2.0
4,234,259 - Xcc-8004.4425.1 0.20 +0.8
4,234,259 - Xcc-8004.4425.1 0.20 -2.0
4,234,259 - Xcc-8004.4425.1 0.20 -1.3
4,234,259 - Xcc-8004.4425.1 0.20 +0.8
4,234,259 - Xcc-8004.4425.1 0.20 -2.4
4,234,738 + Xcc-8004.4425.1 0.63 -1.9
4,234,738 + Xcc-8004.4425.1 0.63 -1.8
4,234,739 - Xcc-8004.4425.1 0.63 -1.8
4,234,739 - Xcc-8004.4425.1 0.63 -2.1
4,234,739 - Xcc-8004.4425.1 0.63 -1.7
4,235,007 + Xcc-8004.4425.1 0.87 -1.3
4,235,008 - Xcc-8004.4425.1 0.87 -2.9
4,235,008 - Xcc-8004.4425.1 0.87 +0.1
4,235,138 + -0.1
4,235,193 + +0.5
4,235,193 + -0.8
4,235,285 - Xcc-8004.4426.1 0.15 -0.3
4,235,285 - Xcc-8004.4426.1 0.15 -0.6
4,235,287 + Xcc-8004.4426.1 0.16 -1.4
4,235,287 + Xcc-8004.4426.1 0.16 -1.6
4,235,287 + Xcc-8004.4426.1 0.16 +0.7
4,235,287 + Xcc-8004.4426.1 0.16 -0.8
4,235,287 + Xcc-8004.4426.1 0.16 -0.4
4,235,288 - Xcc-8004.4426.1 0.16 -1.1
4,235,288 - Xcc-8004.4426.1 0.16 +0.1
4,235,288 - Xcc-8004.4426.1 0.16 -2.5
4,235,288 - Xcc-8004.4426.1 0.16 -2.3
4,235,288 - Xcc-8004.4426.1 0.16 -0.4
4,235,288 - Xcc-8004.4426.1 0.16 -0.6
4,235,288 - Xcc-8004.4426.1 0.16 -2.2
4,235,288 - Xcc-8004.4426.1 0.16 -1.5
4,235,289 + Xcc-8004.4426.1 0.16 -0.8
4,235,289 + Xcc-8004.4426.1 0.16 +0.6
4,235,289 + Xcc-8004.4426.1 0.16 +0.4
4,235,289 + Xcc-8004.4426.1 0.16 -0.6
4,235,289 + Xcc-8004.4426.1 0.16 -1.4
4,235,289 + Xcc-8004.4426.1 0.16 -1.4
4,235,289 + Xcc-8004.4426.1 0.16 +2.0
4,235,289 + Xcc-8004.4426.1 0.16 -2.4
4,235,289 + Xcc-8004.4426.1 0.16 +1.5
4,235,290 - Xcc-8004.4426.1 0.16 -0.4
4,235,290 - Xcc-8004.4426.1 0.16 -1.4
4,235,290 - Xcc-8004.4426.1 0.16 +0.3
4,235,290 - Xcc-8004.4426.1 0.16 -3.3
4,235,290 - Xcc-8004.4426.1 0.16 +2.4
4,235,290 - Xcc-8004.4426.1 0.16 -1.5
4,235,290 - Xcc-8004.4426.1 0.16 +1.4
4,235,290 - Xcc-8004.4426.1 0.16 -0.3
4,235,290 - Xcc-8004.4426.1 0.16 -1.5
4,235,436 + Xcc-8004.4426.1 0.33 -1.0
4,235,436 + Xcc-8004.4426.1 0.33 -0.2
4,235,437 - Xcc-8004.4426.1 0.33 -2.8
4,235,437 - Xcc-8004.4426.1 0.33 -0.1
4,235,437 - Xcc-8004.4426.1 0.33 -1.5
4,235,466 + Xcc-8004.4426.1 0.37 +0.6
4,235,466 + Xcc-8004.4426.1 0.37 +1.4
4,235,539 - Xcc-8004.4426.1 0.45 +0.8
4,235,559 + Xcc-8004.4426.1 0.48 -2.1
4,235,839 - Xcc-8004.4426.1 0.81 -0.6
4,235,860 - Xcc-8004.4426.1 0.83 +0.4

Or see this region's nucleotide sequence