Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4423.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4420.1 and Xcc-8004.4423.1 overlap by 4 nucleotidesXcc-8004.4423.1 and Xcc-8004.4424.1 overlap by 11 nucleotidesXcc-8004.4424.1 and Xcc-8004.4425.1 overlap by 17 nucleotides Xcc-8004.4420.1: Xcc-8004.4420.1 - General secretion pathway protein D, at 4,230,359 to 4,232,638 Xcc-8004.4420.1 Xcc-8004.4423.1: Xcc-8004.4423.1 - General secretion pathway protein N, at 4,232,635 to 4,233,420 Xcc-8004.4423.1 Xcc-8004.4424.1: Xcc-8004.4424.1 - General secretion pathway protein M, at 4,233,410 to 4,234,051 Xcc-8004.4424.1 Xcc-8004.4425.1: Xcc-8004.4425.1 - General secretion pathway protein L, at 4,234,035 to 4,235,156 Xcc-8004.4425.1 Position (kb) 4232 4233 4234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4231.641 kb on + strand, within Xcc-8004.4420.1at 4231.710 kb on + strand, within Xcc-8004.4420.1at 4231.710 kb on + strand, within Xcc-8004.4420.1at 4231.733 kb on + strand, within Xcc-8004.4420.1at 4231.733 kb on + strand, within Xcc-8004.4420.1at 4231.733 kb on + strand, within Xcc-8004.4420.1at 4231.733 kb on + strand, within Xcc-8004.4420.1at 4231.734 kb on - strand, within Xcc-8004.4420.1at 4231.734 kb on - strand, within Xcc-8004.4420.1at 4231.920 kb on + strand, within Xcc-8004.4420.1at 4231.920 kb on + strand, within Xcc-8004.4420.1at 4231.920 kb on + strand, within Xcc-8004.4420.1at 4231.921 kb on - strand, within Xcc-8004.4420.1at 4232.005 kb on - strand, within Xcc-8004.4420.1at 4232.043 kb on + strand, within Xcc-8004.4420.1at 4232.043 kb on + strand, within Xcc-8004.4420.1at 4232.044 kb on - strand, within Xcc-8004.4420.1at 4232.044 kb on - strand, within Xcc-8004.4420.1at 4232.044 kb on - strand, within Xcc-8004.4420.1at 4232.148 kb on + strand, within Xcc-8004.4420.1at 4232.149 kb on - strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.192 kb on + strand, within Xcc-8004.4420.1at 4232.193 kb on - strand, within Xcc-8004.4420.1at 4232.193 kb on - strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.283 kb on + strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.284 kb on - strand, within Xcc-8004.4420.1at 4232.704 kb on - strandat 4232.704 kb on - strandat 4233.023 kb on + strand, within Xcc-8004.4423.1at 4233.227 kb on + strand, within Xcc-8004.4423.1at 4233.490 kb on - strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4234.036 kb on + strandat 4234.037 kb on - strandat 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,231,641 + Xcc-8004.4420.1 0.56 +2.2
4,231,710 + Xcc-8004.4420.1 0.59 -1.5
4,231,710 + Xcc-8004.4420.1 0.59 -1.8
4,231,733 + Xcc-8004.4420.1 0.60 +0.2
4,231,733 + Xcc-8004.4420.1 0.60 -1.8
4,231,733 + Xcc-8004.4420.1 0.60 -2.2
4,231,733 + Xcc-8004.4420.1 0.60 -3.0
4,231,734 - Xcc-8004.4420.1 0.60 -1.0
4,231,734 - Xcc-8004.4420.1 0.60 -3.0
4,231,920 + Xcc-8004.4420.1 0.68 -1.5
4,231,920 + Xcc-8004.4420.1 0.68 -1.0
4,231,920 + Xcc-8004.4420.1 0.68 -0.6
4,231,921 - Xcc-8004.4420.1 0.69 -1.6
4,232,005 - Xcc-8004.4420.1 0.72 -0.4
4,232,043 + Xcc-8004.4420.1 0.74 -2.0
4,232,043 + Xcc-8004.4420.1 0.74 +1.3
4,232,044 - Xcc-8004.4420.1 0.74 -3.0
4,232,044 - Xcc-8004.4420.1 0.74 -0.5
4,232,044 - Xcc-8004.4420.1 0.74 -0.0
4,232,148 + Xcc-8004.4420.1 0.78 +0.5
4,232,149 - Xcc-8004.4420.1 0.79 -0.9
4,232,192 + Xcc-8004.4420.1 0.80 -2.2
4,232,192 + Xcc-8004.4420.1 0.80 -2.5
4,232,192 + Xcc-8004.4420.1 0.80 -2.7
4,232,192 + Xcc-8004.4420.1 0.80 -0.2
4,232,192 + Xcc-8004.4420.1 0.80 -3.3
4,232,192 + Xcc-8004.4420.1 0.80 -1.1
4,232,192 + Xcc-8004.4420.1 0.80 +0.1
4,232,193 - Xcc-8004.4420.1 0.80 -1.5
4,232,193 - Xcc-8004.4420.1 0.80 -2.1
4,232,283 + Xcc-8004.4420.1 0.84 -0.2
4,232,283 + Xcc-8004.4420.1 0.84 -0.2
4,232,283 + Xcc-8004.4420.1 0.84 +0.4
4,232,283 + Xcc-8004.4420.1 0.84 +1.1
4,232,283 + Xcc-8004.4420.1 0.84 +1.1
4,232,283 + Xcc-8004.4420.1 0.84 +2.1
4,232,283 + Xcc-8004.4420.1 0.84 -1.6
4,232,283 + Xcc-8004.4420.1 0.84 +0.4
4,232,283 + Xcc-8004.4420.1 0.84 +1.1
4,232,283 + Xcc-8004.4420.1 0.84 +0.7
4,232,284 - Xcc-8004.4420.1 0.84 -1.2
4,232,284 - Xcc-8004.4420.1 0.84 -2.6
4,232,284 - Xcc-8004.4420.1 0.84 +0.1
4,232,284 - Xcc-8004.4420.1 0.84 -1.6
4,232,284 - Xcc-8004.4420.1 0.84 +0.8
4,232,284 - Xcc-8004.4420.1 0.84 -0.6
4,232,284 - Xcc-8004.4420.1 0.84 -2.7
4,232,284 - Xcc-8004.4420.1 0.84 +0.3
4,232,284 - Xcc-8004.4420.1 0.84 -0.4
4,232,704 - +1.6
4,232,704 - -0.8
4,233,023 + Xcc-8004.4423.1 0.49 -2.6
4,233,227 + Xcc-8004.4423.1 0.75 -1.4
4,233,490 - Xcc-8004.4424.1 0.12 -1.8
4,233,549 + Xcc-8004.4424.1 0.22 -0.3
4,233,549 + Xcc-8004.4424.1 0.22 +3.0
4,233,612 + Xcc-8004.4424.1 0.31 -1.5
4,233,612 + Xcc-8004.4424.1 0.31 -0.9
4,233,612 + Xcc-8004.4424.1 0.31 +0.2
4,233,612 + Xcc-8004.4424.1 0.31 +0.1
4,233,612 + Xcc-8004.4424.1 0.31 -1.1
4,233,613 - Xcc-8004.4424.1 0.32 -1.9
4,233,613 - Xcc-8004.4424.1 0.32 -2.3
4,233,613 - Xcc-8004.4424.1 0.32 +0.6
4,233,613 - Xcc-8004.4424.1 0.32 -1.0
4,233,613 - Xcc-8004.4424.1 0.32 -1.2
4,233,613 - Xcc-8004.4424.1 0.32 -1.6
4,233,613 - Xcc-8004.4424.1 0.32 -1.5
4,233,981 + Xcc-8004.4424.1 0.89 -0.8
4,233,981 + Xcc-8004.4424.1 0.89 -1.4
4,233,981 + Xcc-8004.4424.1 0.89 -2.2
4,233,981 + Xcc-8004.4424.1 0.89 -0.5
4,233,981 + Xcc-8004.4424.1 0.89 -1.7
4,233,982 - Xcc-8004.4424.1 0.89 -0.4
4,233,982 - Xcc-8004.4424.1 0.89 -1.3
4,234,036 + +1.2
4,234,037 - +2.3
4,234,258 + Xcc-8004.4425.1 0.20 +0.5
4,234,258 + Xcc-8004.4425.1 0.20 +1.4
4,234,258 + Xcc-8004.4425.1 0.20 +2.1
4,234,258 + Xcc-8004.4425.1 0.20 -2.0
4,234,259 - Xcc-8004.4425.1 0.20 +0.8
4,234,259 - Xcc-8004.4425.1 0.20 -2.0
4,234,259 - Xcc-8004.4425.1 0.20 -1.3
4,234,259 - Xcc-8004.4425.1 0.20 +0.8
4,234,259 - Xcc-8004.4425.1 0.20 -2.4

Or see this region's nucleotide sequence