Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4313.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4312.1 and Xcc-8004.4313.1 overlap by 4 nucleotidesXcc-8004.4313.1 and Xcc-8004.4314.1 are separated by 23 nucleotides Xcc-8004.4312.1: Xcc-8004.4312.1 - putative membrane protein, at 4,132,943 to 4,133,986 Xcc-8004.4312.1 Xcc-8004.4313.1: Xcc-8004.4313.1 - hypothetical protein, at 4,133,983 to 4,134,612 Xcc-8004.4313.1 Xcc-8004.4314.1: Xcc-8004.4314.1 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 4,134,636 to 4,137,350 Xcc-8004.4314.1 Position (kb) 4133 4134 4135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4133.124 kb on + strand, within Xcc-8004.4312.1at 4133.125 kb on - strand, within Xcc-8004.4312.1at 4133.137 kb on - strand, within Xcc-8004.4312.1at 4133.235 kb on + strand, within Xcc-8004.4312.1at 4133.236 kb on - strand, within Xcc-8004.4312.1at 4133.236 kb on - strand, within Xcc-8004.4312.1at 4133.277 kb on + strand, within Xcc-8004.4312.1at 4133.277 kb on + strand, within Xcc-8004.4312.1at 4133.277 kb on + strand, within Xcc-8004.4312.1at 4133.278 kb on - strand, within Xcc-8004.4312.1at 4133.278 kb on - strand, within Xcc-8004.4312.1at 4133.278 kb on - strand, within Xcc-8004.4312.1at 4133.278 kb on - strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.331 kb on + strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.332 kb on - strand, within Xcc-8004.4312.1at 4133.508 kb on - strand, within Xcc-8004.4312.1at 4133.542 kb on - strand, within Xcc-8004.4312.1at 4133.583 kb on + strand, within Xcc-8004.4312.1at 4133.583 kb on + strand, within Xcc-8004.4312.1at 4133.583 kb on + strand, within Xcc-8004.4312.1at 4133.584 kb on - strand, within Xcc-8004.4312.1at 4133.611 kb on - strand, within Xcc-8004.4312.1at 4133.624 kb on - strand, within Xcc-8004.4312.1at 4133.624 kb on - strand, within Xcc-8004.4312.1at 4133.899 kb on - strandat 4134.173 kb on - strand, within Xcc-8004.4313.1at 4134.173 kb on - strand, within Xcc-8004.4313.1at 4134.460 kb on + strand, within Xcc-8004.4313.1at 4134.461 kb on - strand, within Xcc-8004.4313.1at 4134.772 kb on + strandat 4134.772 kb on + strandat 4134.773 kb on - strandat 4134.961 kb on - strand, within Xcc-8004.4314.1at 4135.078 kb on + strand, within Xcc-8004.4314.1at 4135.234 kb on + strand, within Xcc-8004.4314.1at 4135.235 kb on - strand, within Xcc-8004.4314.1at 4135.396 kb on - strand, within Xcc-8004.4314.1at 4135.417 kb on + strand, within Xcc-8004.4314.1at 4135.417 kb on + strand, within Xcc-8004.4314.1at 4135.418 kb on - strand, within Xcc-8004.4314.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,133,124 + Xcc-8004.4312.1 0.17 -0.1
4,133,125 - Xcc-8004.4312.1 0.17 -1.8
4,133,137 - Xcc-8004.4312.1 0.19 -1.3
4,133,235 + Xcc-8004.4312.1 0.28 +0.2
4,133,236 - Xcc-8004.4312.1 0.28 -0.6
4,133,236 - Xcc-8004.4312.1 0.28 +1.4
4,133,277 + Xcc-8004.4312.1 0.32 +0.8
4,133,277 + Xcc-8004.4312.1 0.32 +0.4
4,133,277 + Xcc-8004.4312.1 0.32 +2.2
4,133,278 - Xcc-8004.4312.1 0.32 -0.4
4,133,278 - Xcc-8004.4312.1 0.32 +0.5
4,133,278 - Xcc-8004.4312.1 0.32 -0.8
4,133,278 - Xcc-8004.4312.1 0.32 +3.5
4,133,331 + Xcc-8004.4312.1 0.37 -0.5
4,133,331 + Xcc-8004.4312.1 0.37 -0.5
4,133,331 + Xcc-8004.4312.1 0.37 +0.2
4,133,331 + Xcc-8004.4312.1 0.37 +0.2
4,133,331 + Xcc-8004.4312.1 0.37 +0.2
4,133,331 + Xcc-8004.4312.1 0.37 +0.4
4,133,331 + Xcc-8004.4312.1 0.37 -0.2
4,133,331 + Xcc-8004.4312.1 0.37 -0.4
4,133,331 + Xcc-8004.4312.1 0.37 -0.6
4,133,331 + Xcc-8004.4312.1 0.37 +0.2
4,133,331 + Xcc-8004.4312.1 0.37 -1.2
4,133,331 + Xcc-8004.4312.1 0.37 +1.5
4,133,331 + Xcc-8004.4312.1 0.37 -0.1
4,133,332 - Xcc-8004.4312.1 0.37 -1.8
4,133,332 - Xcc-8004.4312.1 0.37 +2.8
4,133,332 - Xcc-8004.4312.1 0.37 +2.2
4,133,332 - Xcc-8004.4312.1 0.37 -0.0
4,133,332 - Xcc-8004.4312.1 0.37 +0.8
4,133,332 - Xcc-8004.4312.1 0.37 +0.8
4,133,332 - Xcc-8004.4312.1 0.37 -2.1
4,133,332 - Xcc-8004.4312.1 0.37 -1.3
4,133,332 - Xcc-8004.4312.1 0.37 +0.8
4,133,332 - Xcc-8004.4312.1 0.37 +0.8
4,133,508 - Xcc-8004.4312.1 0.54 -1.5
4,133,542 - Xcc-8004.4312.1 0.57 -0.8
4,133,583 + Xcc-8004.4312.1 0.61 -0.8
4,133,583 + Xcc-8004.4312.1 0.61 -2.2
4,133,583 + Xcc-8004.4312.1 0.61 -0.2
4,133,584 - Xcc-8004.4312.1 0.61 -0.2
4,133,611 - Xcc-8004.4312.1 0.64 -1.9
4,133,624 - Xcc-8004.4312.1 0.65 +0.4
4,133,624 - Xcc-8004.4312.1 0.65 -2.7
4,133,899 - +1.5
4,134,173 - Xcc-8004.4313.1 0.30 -3.1
4,134,173 - Xcc-8004.4313.1 0.30 -0.4
4,134,460 + Xcc-8004.4313.1 0.76 -1.2
4,134,461 - Xcc-8004.4313.1 0.76 -0.6
4,134,772 + -0.5
4,134,772 + -0.4
4,134,773 - -2.4
4,134,961 - Xcc-8004.4314.1 0.12 -2.5
4,135,078 + Xcc-8004.4314.1 0.16 -1.0
4,135,234 + Xcc-8004.4314.1 0.22 +2.4
4,135,235 - Xcc-8004.4314.1 0.22 -0.5
4,135,396 - Xcc-8004.4314.1 0.28 +0.3
4,135,417 + Xcc-8004.4314.1 0.29 -1.3
4,135,417 + Xcc-8004.4314.1 0.29 -1.8
4,135,418 - Xcc-8004.4314.1 0.29 +1.8

Or see this region's nucleotide sequence