Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.427.1 and Xcc-8004.428.1 are separated by 100 nucleotides Xcc-8004.428.1 and Xcc-8004.429.1 are separated by 81 nucleotides Xcc-8004.429.1 and Xcc-8004.430.1 are separated by 80 nucleotides Xcc-8004.430.1 and Xcc-8004.431.1 overlap by 112 nucleotides Xcc-8004.431.1 and Xcc-8004.432.1 are separated by 536 nucleotides
Xcc-8004.427.1: Xcc-8004.427.1 - hypothetical protein, at 406,628 to 407,068
Xcc-8004.427.1
Xcc-8004.428.1: Xcc-8004.428.1 - hypothetical protein, at 407,169 to 407,657
Xcc-8004.428.1
Xcc-8004.429.1: Xcc-8004.429.1 - hypothetical protein, at 407,739 to 408,065
Xcc-8004.429.1
Xcc-8004.430.1: Xcc-8004.430.1 - Xanthomonadin biosynthesis related protein, at 408,146 to 408,340
Xcc-8004.430.1
Xcc-8004.431.1: Xcc-8004.431.1 - Xanthomonadin biosynthesis related protein, at 408,229 to 408,426
Xcc-8004.431.1
Xcc-8004.432.1: Xcc-8004.432.1 - hypothetical protein, at 408,963 to 409,058
Xcc-8004.432.1
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 406.740 kb on + strand, within Xcc-8004.427.1 at 406.741 kb on - strand, within Xcc-8004.427.1 at 406.833 kb on + strand, within Xcc-8004.427.1 at 406.833 kb on + strand, within Xcc-8004.427.1 at 406.833 kb on + strand, within Xcc-8004.427.1 at 406.834 kb on - strand, within Xcc-8004.427.1 at 406.850 kb on - strand, within Xcc-8004.427.1 at 406.881 kb on + strand, within Xcc-8004.427.1 at 406.881 kb on + strand, within Xcc-8004.427.1 at 406.881 kb on + strand, within Xcc-8004.427.1 at 406.881 kb on + strand, within Xcc-8004.427.1 at 406.881 kb on + strand, within Xcc-8004.427.1 at 406.882 kb on - strand, within Xcc-8004.427.1 at 406.882 kb on - strand, within Xcc-8004.427.1 at 406.882 kb on - strand, within Xcc-8004.427.1 at 406.882 kb on - strand, within Xcc-8004.427.1 at 406.882 kb on - strand, within Xcc-8004.427.1 at 406.915 kb on + strand, within Xcc-8004.427.1 at 406.915 kb on + strand, within Xcc-8004.427.1 at 406.916 kb on - strand, within Xcc-8004.427.1 at 406.923 kb on + strand, within Xcc-8004.427.1 at 406.923 kb on + strand, within Xcc-8004.427.1 at 407.072 kb on + strand at 407.072 kb on + strand at 407.072 kb on + strand at 407.073 kb on - strand at 407.073 kb on - strand at 407.073 kb on - strand at 407.073 kb on - strand at 407.086 kb on + strand at 407.086 kb on + strand at 407.087 kb on - strand at 407.087 kb on - strand at 407.263 kb on + strand, within Xcc-8004.428.1 at 407.263 kb on + strand, within Xcc-8004.428.1 at 407.263 kb on + strand, within Xcc-8004.428.1 at 407.263 kb on + strand, within Xcc-8004.428.1 at 407.264 kb on - strand, within Xcc-8004.428.1 at 407.264 kb on - strand, within Xcc-8004.428.1 at 407.301 kb on + strand, within Xcc-8004.428.1 at 407.373 kb on + strand, within Xcc-8004.428.1 at 407.374 kb on - strand, within Xcc-8004.428.1 at 407.420 kb on + strand, within Xcc-8004.428.1 at 407.420 kb on + strand, within Xcc-8004.428.1 at 407.421 kb on - strand, within Xcc-8004.428.1 at 407.421 kb on - strand, within Xcc-8004.428.1 at 407.421 kb on - strand, within Xcc-8004.428.1 at 407.421 kb on - strand, within Xcc-8004.428.1 at 407.450 kb on + strand, within Xcc-8004.428.1 at 407.450 kb on + strand, within Xcc-8004.428.1 at 407.451 kb on - strand, within Xcc-8004.428.1 at 407.455 kb on + strand, within Xcc-8004.428.1 at 407.456 kb on - strand, within Xcc-8004.428.1 at 407.487 kb on - strand, within Xcc-8004.428.1 at 407.539 kb on + strand, within Xcc-8004.428.1 at 407.539 kb on + strand, within Xcc-8004.428.1 at 407.539 kb on + strand, within Xcc-8004.428.1 at 407.545 kb on + strand, within Xcc-8004.428.1 at 407.545 kb on + strand, within Xcc-8004.428.1 at 407.546 kb on - strand, within Xcc-8004.428.1 at 407.546 kb on - strand, within Xcc-8004.428.1 at 407.546 kb on - strand, within Xcc-8004.428.1 at 407.546 kb on - strand, within Xcc-8004.428.1 at 407.549 kb on - strand, within Xcc-8004.428.1 at 407.572 kb on - strand, within Xcc-8004.428.1 at 407.578 kb on - strand, within Xcc-8004.428.1 at 407.578 kb on - strand, within Xcc-8004.428.1 at 407.620 kb on - strand at 407.736 kb on - strand at 407.740 kb on + strand at 407.818 kb on - strand, within Xcc-8004.429.1 at 407.950 kb on - strand, within Xcc-8004.429.1 at 408.010 kb on + strand, within Xcc-8004.429.1 at 408.045 kb on - strand at 408.045 kb on - strand at 408.066 kb on - strand at 408.085 kb on - strand at 408.085 kb on - strand at 408.492 kb on + strand at 408.496 kb on + strand at 408.497 kb on - strand at 408.578 kb on - strand at 408.578 kb on - strand at 408.578 kb on - strand at 408.621 kb on + strand at 408.622 kb on - strand at 408.622 kb on - strand at 408.634 kb on - strand at 408.648 kb on + strand at 408.648 kb on + strand at 408.648 kb on + strand at 408.665 kb on - strand at 408.665 kb on - strand at 408.665 kb on - strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.713 kb on + strand at 408.714 kb on - strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.723 kb on - strand at 408.730 kb on + strand at 408.734 kb on + strand at 408.734 kb on + strand at 408.748 kb on + strand at 408.749 kb on - strand at 408.886 kb on + strand at 408.886 kb on + strand at 408.890 kb on + strand at 408.891 kb on - strand at 408.984 kb on - strand, within Xcc-8004.432.1 at 409.023 kb on + strand, within Xcc-8004.432.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 406,740 + Xcc-8004.427.1 0.25 -0.6 406,741 - Xcc-8004.427.1 0.26 -1.8 406,833 + Xcc-8004.427.1 0.46 -0.4 406,833 + Xcc-8004.427.1 0.46 +2.4 406,833 + Xcc-8004.427.1 0.46 -0.9 406,834 - Xcc-8004.427.1 0.47 +0.1 406,850 - Xcc-8004.427.1 0.50 -1.8 406,881 + Xcc-8004.427.1 0.57 -2.4 406,881 + Xcc-8004.427.1 0.57 +0.4 406,881 + Xcc-8004.427.1 0.57 +2.3 406,881 + Xcc-8004.427.1 0.57 +1.7 406,881 + Xcc-8004.427.1 0.57 -0.7 406,882 - Xcc-8004.427.1 0.58 -0.2 406,882 - Xcc-8004.427.1 0.58 +0.0 406,882 - Xcc-8004.427.1 0.58 +2.4 406,882 - Xcc-8004.427.1 0.58 -0.8 406,882 - Xcc-8004.427.1 0.58 +0.5 406,915 + Xcc-8004.427.1 0.65 -0.1 406,915 + Xcc-8004.427.1 0.65 -0.2 406,916 - Xcc-8004.427.1 0.65 -2.1 406,923 + Xcc-8004.427.1 0.67 +0.1 406,923 + Xcc-8004.427.1 0.67 +0.4 407,072 + +1.7 407,072 + -2.0 407,072 + +1.2 407,073 - +2.0 407,073 - -1.9 407,073 - +0.2 407,073 - +1.1 407,086 + -0.4 407,086 + -1.7 407,087 - +0.3 407,087 - -2.4 407,263 + Xcc-8004.428.1 0.19 -0.1 407,263 + Xcc-8004.428.1 0.19 -0.8 407,263 + Xcc-8004.428.1 0.19 -0.0 407,263 + Xcc-8004.428.1 0.19 -3.1 407,264 - Xcc-8004.428.1 0.19 -3.1 407,264 - Xcc-8004.428.1 0.19 +3.4 407,301 + Xcc-8004.428.1 0.27 +0.3 407,373 + Xcc-8004.428.1 0.42 +2.6 407,374 - Xcc-8004.428.1 0.42 +0.4 407,420 + Xcc-8004.428.1 0.51 -0.3 407,420 + Xcc-8004.428.1 0.51 -2.3 407,421 - Xcc-8004.428.1 0.52 -0.8 407,421 - Xcc-8004.428.1 0.52 +0.6 407,421 - Xcc-8004.428.1 0.52 +4.1 407,421 - Xcc-8004.428.1 0.52 +1.8 407,450 + Xcc-8004.428.1 0.57 -1.6 407,450 + Xcc-8004.428.1 0.57 +0.6 407,451 - Xcc-8004.428.1 0.58 -0.7 407,455 + Xcc-8004.428.1 0.58 +1.1 407,456 - Xcc-8004.428.1 0.59 -1.8 407,487 - Xcc-8004.428.1 0.65 -1.5 407,539 + Xcc-8004.428.1 0.76 -1.6 407,539 + Xcc-8004.428.1 0.76 -0.8 407,539 + Xcc-8004.428.1 0.76 -0.4 407,545 + Xcc-8004.428.1 0.77 +0.7 407,545 + Xcc-8004.428.1 0.77 -0.6 407,546 - Xcc-8004.428.1 0.77 -0.4 407,546 - Xcc-8004.428.1 0.77 -1.3 407,546 - Xcc-8004.428.1 0.77 -1.2 407,546 - Xcc-8004.428.1 0.77 -2.1 407,549 - Xcc-8004.428.1 0.78 +2.9 407,572 - Xcc-8004.428.1 0.82 -2.8 407,578 - Xcc-8004.428.1 0.84 -0.2 407,578 - Xcc-8004.428.1 0.84 +1.0 407,620 - -0.9 407,736 - -0.4 407,740 + +2.9 407,818 - Xcc-8004.429.1 0.24 -1.1 407,950 - Xcc-8004.429.1 0.65 -0.4 408,010 + Xcc-8004.429.1 0.83 -2.1 408,045 - -1.2 408,045 - +1.1 408,066 - +0.8 408,085 - +2.1 408,085 - -0.5 408,492 + -1.5 408,496 + -0.0 408,497 - +3.5 408,578 - +0.1 408,578 - -0.2 408,578 - -1.6 408,621 + -1.9 408,622 - -2.7 408,622 - -0.9 408,634 - +0.8 408,648 + -1.1 408,648 + -0.4 408,648 + +2.4 408,665 - +3.6 408,665 - -1.2 408,665 - -0.6 408,698 + +0.1 408,698 + -1.2 408,698 + -1.0 408,698 + +2.2 408,699 - +1.4 408,699 - -0.5 408,699 - -0.2 408,699 - +0.9 408,699 - -0.9 408,713 + -0.9 408,714 - +2.4 408,722 + -0.6 408,722 + +0.5 408,722 + -0.9 408,722 + -2.3 408,722 + +1.3 408,723 - -1.9 408,730 + -1.5 408,734 + +0.7 408,734 + +0.6 408,748 + +1.4 408,749 - -2.0 408,886 + +1.2 408,886 + -0.0 408,890 + +0.1 408,891 - -2.1 408,984 - Xcc-8004.432.1 0.22 +0.3 409,023 + Xcc-8004.432.1 0.62 -2.2
Or see this region's nucleotide sequence