Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4226.1 and Xcc-8004.4227.1 are separated by 276 nucleotides Xcc-8004.4227.1 and Xcc-8004.4228.1 overlap by 45 nucleotides Xcc-8004.4228.1 and Xcc-8004.4229.1 are separated by 368 nucleotides
Xcc-8004.4226.1: Xcc-8004.4226.1 - Transaldolase (EC 2.2.1.2), at 4,051,852 to 4,052,820
Xcc-8004.4226.1
Xcc-8004.4227.1: Xcc-8004.4227.1 - ThiJ/PfpI family protein, at 4,053,097 to 4,053,666
Xcc-8004.4227.1
Xcc-8004.4228.1: Xcc-8004.4228.1 - hypothetical protein, at 4,053,622 to 4,053,822
Xcc-8004.4228.1
Xcc-8004.4229.1: Xcc-8004.4229.1 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 4,054,191 to 4,054,841
Xcc-8004.4229.1
Position (kb) 4053
4054 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.218 kb on + strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.219 kb on - strand, within Xcc-8004.4226.1 at 4052.488 kb on + strand, within Xcc-8004.4226.1 at 4052.489 kb on - strand, within Xcc-8004.4226.1 at 4052.489 kb on - strand, within Xcc-8004.4226.1 at 4052.888 kb on + strand at 4052.964 kb on + strand at 4052.964 kb on + strand at 4052.964 kb on + strand at 4053.356 kb on + strand, within Xcc-8004.4227.1 at 4053.421 kb on + strand, within Xcc-8004.4227.1 at 4053.422 kb on - strand, within Xcc-8004.4227.1 at 4053.422 kb on - strand, within Xcc-8004.4227.1 at 4053.597 kb on + strand, within Xcc-8004.4227.1 at 4053.597 kb on + strand, within Xcc-8004.4227.1 at 4053.597 kb on + strand, within Xcc-8004.4227.1 at 4053.598 kb on - strand, within Xcc-8004.4227.1 at 4053.598 kb on - strand, within Xcc-8004.4227.1 at 4053.624 kb on - strand at 4053.624 kb on - strand at 4053.710 kb on + strand, within Xcc-8004.4228.1 at 4053.712 kb on + strand, within Xcc-8004.4228.1 at 4053.712 kb on + strand, within Xcc-8004.4228.1 at 4053.713 kb on - strand, within Xcc-8004.4228.1 at 4053.869 kb on + strand at 4053.870 kb on - strand at 4053.870 kb on - strand at 4053.870 kb on - strand at 4053.900 kb on + strand at 4054.064 kb on + strand at 4054.131 kb on + strand at 4054.243 kb on + strand at 4054.244 kb on - strand at 4054.267 kb on + strand, within Xcc-8004.4229.1 at 4054.267 kb on + strand, within Xcc-8004.4229.1 at 4054.268 kb on - strand, within Xcc-8004.4229.1 at 4054.268 kb on - strand, within Xcc-8004.4229.1 at 4054.291 kb on + strand, within Xcc-8004.4229.1 at 4054.291 kb on + strand, within Xcc-8004.4229.1 at 4054.294 kb on + strand, within Xcc-8004.4229.1 at 4054.294 kb on + strand, within Xcc-8004.4229.1 at 4054.294 kb on + strand, within Xcc-8004.4229.1 at 4054.294 kb on + strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.295 kb on - strand, within Xcc-8004.4229.1 at 4054.366 kb on + strand, within Xcc-8004.4229.1 at 4054.366 kb on + strand, within Xcc-8004.4229.1 at 4054.367 kb on - strand, within Xcc-8004.4229.1 at 4054.396 kb on + strand, within Xcc-8004.4229.1 at 4054.397 kb on - strand, within Xcc-8004.4229.1 at 4054.397 kb on - strand, within Xcc-8004.4229.1 at 4054.417 kb on + strand, within Xcc-8004.4229.1 at 4054.417 kb on + strand, within Xcc-8004.4229.1 at 4054.417 kb on + strand, within Xcc-8004.4229.1 at 4054.418 kb on - strand, within Xcc-8004.4229.1 at 4054.432 kb on + strand, within Xcc-8004.4229.1 at 4054.534 kb on + strand, within Xcc-8004.4229.1 at 4054.534 kb on + strand, within Xcc-8004.4229.1 at 4054.535 kb on - strand, within Xcc-8004.4229.1 at 4054.535 kb on - strand, within Xcc-8004.4229.1 at 4054.636 kb on + strand, within Xcc-8004.4229.1 at 4054.636 kb on + strand, within Xcc-8004.4229.1 at 4054.636 kb on + strand, within Xcc-8004.4229.1 at 4054.637 kb on - strand, within Xcc-8004.4229.1 at 4054.637 kb on - strand, within Xcc-8004.4229.1 at 4054.637 kb on - strand, within Xcc-8004.4229.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,052,218 + Xcc-8004.4226.1 0.38 +0.2 4,052,218 + Xcc-8004.4226.1 0.38 +0.7 4,052,218 + Xcc-8004.4226.1 0.38 +1.4 4,052,218 + Xcc-8004.4226.1 0.38 +0.5 4,052,218 + Xcc-8004.4226.1 0.38 +1.5 4,052,218 + Xcc-8004.4226.1 0.38 -0.2 4,052,219 - Xcc-8004.4226.1 0.38 +0.2 4,052,219 - Xcc-8004.4226.1 0.38 -0.2 4,052,219 - Xcc-8004.4226.1 0.38 -0.1 4,052,219 - Xcc-8004.4226.1 0.38 -0.6 4,052,219 - Xcc-8004.4226.1 0.38 -1.1 4,052,219 - Xcc-8004.4226.1 0.38 -1.3 4,052,219 - Xcc-8004.4226.1 0.38 -3.1 4,052,219 - Xcc-8004.4226.1 0.38 -2.5 4,052,488 + Xcc-8004.4226.1 0.66 -0.6 4,052,489 - Xcc-8004.4226.1 0.66 -1.8 4,052,489 - Xcc-8004.4226.1 0.66 +1.2 4,052,888 + -1.5 4,052,964 + +0.5 4,052,964 + +0.2 4,052,964 + +1.8 4,053,356 + Xcc-8004.4227.1 0.45 +0.2 4,053,421 + Xcc-8004.4227.1 0.57 +1.0 4,053,422 - Xcc-8004.4227.1 0.57 -1.3 4,053,422 - Xcc-8004.4227.1 0.57 -2.2 4,053,597 + Xcc-8004.4227.1 0.88 -1.3 4,053,597 + Xcc-8004.4227.1 0.88 -0.0 4,053,597 + Xcc-8004.4227.1 0.88 -1.0 4,053,598 - Xcc-8004.4227.1 0.88 -0.1 4,053,598 - Xcc-8004.4227.1 0.88 -2.5 4,053,624 - +2.4 4,053,624 - +0.4 4,053,710 + Xcc-8004.4228.1 0.44 -0.5 4,053,712 + Xcc-8004.4228.1 0.45 -1.4 4,053,712 + Xcc-8004.4228.1 0.45 +0.6 4,053,713 - Xcc-8004.4228.1 0.45 +1.8 4,053,869 + +0.1 4,053,870 - +1.8 4,053,870 - -3.0 4,053,870 - -0.5 4,053,900 + +3.3 4,054,064 + -0.5 4,054,131 + +1.7 4,054,243 + -0.4 4,054,244 - +1.0 4,054,267 + Xcc-8004.4229.1 0.12 -1.8 4,054,267 + Xcc-8004.4229.1 0.12 -0.8 4,054,268 - Xcc-8004.4229.1 0.12 +0.4 4,054,268 - Xcc-8004.4229.1 0.12 +1.2 4,054,291 + Xcc-8004.4229.1 0.15 -1.1 4,054,291 + Xcc-8004.4229.1 0.15 -2.3 4,054,294 + Xcc-8004.4229.1 0.16 +1.4 4,054,294 + Xcc-8004.4229.1 0.16 +1.5 4,054,294 + Xcc-8004.4229.1 0.16 -1.8 4,054,294 + Xcc-8004.4229.1 0.16 -0.9 4,054,295 - Xcc-8004.4229.1 0.16 -1.9 4,054,295 - Xcc-8004.4229.1 0.16 -0.6 4,054,295 - Xcc-8004.4229.1 0.16 +3.1 4,054,295 - Xcc-8004.4229.1 0.16 -1.9 4,054,295 - Xcc-8004.4229.1 0.16 +2.4 4,054,295 - Xcc-8004.4229.1 0.16 -1.9 4,054,295 - Xcc-8004.4229.1 0.16 -0.2 4,054,366 + Xcc-8004.4229.1 0.27 +0.3 4,054,366 + Xcc-8004.4229.1 0.27 +1.0 4,054,367 - Xcc-8004.4229.1 0.27 -1.2 4,054,396 + Xcc-8004.4229.1 0.31 +0.4 4,054,397 - Xcc-8004.4229.1 0.32 +0.3 4,054,397 - Xcc-8004.4229.1 0.32 +1.0 4,054,417 + Xcc-8004.4229.1 0.35 -1.3 4,054,417 + Xcc-8004.4229.1 0.35 +1.2 4,054,417 + Xcc-8004.4229.1 0.35 +0.6 4,054,418 - Xcc-8004.4229.1 0.35 +0.4 4,054,432 + Xcc-8004.4229.1 0.37 -0.9 4,054,534 + Xcc-8004.4229.1 0.53 +0.4 4,054,534 + Xcc-8004.4229.1 0.53 +1.4 4,054,535 - Xcc-8004.4229.1 0.53 +0.6 4,054,535 - Xcc-8004.4229.1 0.53 -0.8 4,054,636 + Xcc-8004.4229.1 0.68 -1.1 4,054,636 + Xcc-8004.4229.1 0.68 +1.0 4,054,636 + Xcc-8004.4229.1 0.68 -0.5 4,054,637 - Xcc-8004.4229.1 0.69 -1.3 4,054,637 - Xcc-8004.4229.1 0.69 -0.3 4,054,637 - Xcc-8004.4229.1 0.69 -2.2
Or see this region's nucleotide sequence