Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4080.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4078.1 and Xcc-8004.4079.1 are separated by 17 nucleotidesXcc-8004.4079.1 and Xcc-8004.4080.1 are separated by 171 nucleotidesXcc-8004.4080.1 and Xcc-8004.4081.1 are separated by 114 nucleotides Xcc-8004.4078.1: Xcc-8004.4078.1 - putative; ORF located using Glimmer/Genemark, at 3,935,106 to 3,935,681 Xcc-8004.4078.1 Xcc-8004.4079.1: Xcc-8004.4079.1 - hypothetical protein, at 3,935,699 to 3,936,343 Xcc-8004.4079.1 Xcc-8004.4080.1: Xcc-8004.4080.1 - Phospholipase C, at 3,936,515 to 3,938,596 Xcc-8004.4080.1 Xcc-8004.4081.1: Xcc-8004.4081.1 - hypothetical protein, at 3,938,711 to 3,941,125 Xcc-8004.4081.1 Position (kb) 3936 3937 3938 3939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3935.619 kb on - strand, within Xcc-8004.4078.1at 3935.700 kb on + strandat 3935.700 kb on + strandat 3935.701 kb on - strandat 3935.702 kb on + strandat 3935.702 kb on + strandat 3935.702 kb on + strandat 3935.703 kb on - strandat 3936.002 kb on + strand, within Xcc-8004.4079.1at 3936.002 kb on + strand, within Xcc-8004.4079.1at 3936.003 kb on - strand, within Xcc-8004.4079.1at 3936.621 kb on + strandat 3936.833 kb on + strand, within Xcc-8004.4080.1at 3936.833 kb on + strand, within Xcc-8004.4080.1at 3936.888 kb on + strand, within Xcc-8004.4080.1at 3936.889 kb on - strand, within Xcc-8004.4080.1at 3936.889 kb on - strand, within Xcc-8004.4080.1at 3936.951 kb on + strand, within Xcc-8004.4080.1at 3936.951 kb on + strand, within Xcc-8004.4080.1at 3936.951 kb on + strand, within Xcc-8004.4080.1at 3936.951 kb on + strand, within Xcc-8004.4080.1at 3936.952 kb on - strand, within Xcc-8004.4080.1at 3936.954 kb on + strand, within Xcc-8004.4080.1at 3936.955 kb on - strand, within Xcc-8004.4080.1at 3936.985 kb on - strand, within Xcc-8004.4080.1at 3936.985 kb on - strand, within Xcc-8004.4080.1at 3936.985 kb on - strand, within Xcc-8004.4080.1at 3937.463 kb on - strand, within Xcc-8004.4080.1at 3937.463 kb on - strand, within Xcc-8004.4080.1at 3937.536 kb on + strand, within Xcc-8004.4080.1at 3937.536 kb on + strand, within Xcc-8004.4080.1at 3937.537 kb on - strand, within Xcc-8004.4080.1at 3937.620 kb on + strand, within Xcc-8004.4080.1at 3937.700 kb on + strand, within Xcc-8004.4080.1at 3937.866 kb on + strand, within Xcc-8004.4080.1at 3937.875 kb on + strand, within Xcc-8004.4080.1at 3937.876 kb on - strand, within Xcc-8004.4080.1at 3937.876 kb on - strand, within Xcc-8004.4080.1at 3937.917 kb on + strand, within Xcc-8004.4080.1at 3937.917 kb on + strand, within Xcc-8004.4080.1at 3938.052 kb on + strand, within Xcc-8004.4080.1at 3938.052 kb on + strand, within Xcc-8004.4080.1at 3938.052 kb on + strand, within Xcc-8004.4080.1at 3938.053 kb on - strand, within Xcc-8004.4080.1at 3938.053 kb on - strand, within Xcc-8004.4080.1at 3938.095 kb on - strand, within Xcc-8004.4080.1at 3938.185 kb on - strand, within Xcc-8004.4080.1at 3938.185 kb on - strand, within Xcc-8004.4080.1at 3938.185 kb on - strand, within Xcc-8004.4080.1at 3938.185 kb on - strand, within Xcc-8004.4080.1at 3938.202 kb on + strand, within Xcc-8004.4080.1at 3938.203 kb on - strand, within Xcc-8004.4080.1at 3938.360 kb on + strand, within Xcc-8004.4080.1at 3938.415 kb on + strandat 3938.416 kb on - strandat 3938.667 kb on + strandat 3938.667 kb on + strandat 3938.667 kb on + strandat 3938.667 kb on + strandat 3938.667 kb on + strandat 3938.667 kb on + strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.668 kb on - strandat 3938.917 kb on - strandat 3939.107 kb on + strand, within Xcc-8004.4081.1at 3939.107 kb on + strand, within Xcc-8004.4081.1at 3939.108 kb on - strand, within Xcc-8004.4081.1at 3939.108 kb on - strand, within Xcc-8004.4081.1at 3939.108 kb on - strand, within Xcc-8004.4081.1at 3939.108 kb on - strand, within Xcc-8004.4081.1at 3939.108 kb on - strand, within Xcc-8004.4081.1at 3939.197 kb on + strand, within Xcc-8004.4081.1at 3939.198 kb on - strand, within Xcc-8004.4081.1at 3939.329 kb on + strand, within Xcc-8004.4081.1at 3939.530 kb on + strand, within Xcc-8004.4081.1at 3939.591 kb on - strand, within Xcc-8004.4081.1at 3939.591 kb on - strand, within Xcc-8004.4081.1at 3939.591 kb on - strand, within Xcc-8004.4081.1at 3939.596 kb on + strand, within Xcc-8004.4081.1at 3939.596 kb on + strand, within Xcc-8004.4081.1at 3939.596 kb on + strand, within Xcc-8004.4081.1at 3939.596 kb on + strand, within Xcc-8004.4081.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,935,619 - Xcc-8004.4078.1 0.89 +1.4
3,935,700 + +0.5
3,935,700 + +0.4
3,935,701 - +3.1
3,935,702 + -3.3
3,935,702 + -2.3
3,935,702 + -0.4
3,935,703 - -0.7
3,936,002 + Xcc-8004.4079.1 0.47 -0.4
3,936,002 + Xcc-8004.4079.1 0.47 +1.4
3,936,003 - Xcc-8004.4079.1 0.47 -0.2
3,936,621 + -1.8
3,936,833 + Xcc-8004.4080.1 0.15 -0.2
3,936,833 + Xcc-8004.4080.1 0.15 -0.5
3,936,888 + Xcc-8004.4080.1 0.18 -1.1
3,936,889 - Xcc-8004.4080.1 0.18 +0.3
3,936,889 - Xcc-8004.4080.1 0.18 -1.0
3,936,951 + Xcc-8004.4080.1 0.21 +0.1
3,936,951 + Xcc-8004.4080.1 0.21 +1.8
3,936,951 + Xcc-8004.4080.1 0.21 -0.1
3,936,951 + Xcc-8004.4080.1 0.21 -0.7
3,936,952 - Xcc-8004.4080.1 0.21 +0.8
3,936,954 + Xcc-8004.4080.1 0.21 +1.5
3,936,955 - Xcc-8004.4080.1 0.21 -0.7
3,936,985 - Xcc-8004.4080.1 0.23 -0.7
3,936,985 - Xcc-8004.4080.1 0.23 +2.1
3,936,985 - Xcc-8004.4080.1 0.23 +0.2
3,937,463 - Xcc-8004.4080.1 0.46 +0.8
3,937,463 - Xcc-8004.4080.1 0.46 +1.6
3,937,536 + Xcc-8004.4080.1 0.49 +0.1
3,937,536 + Xcc-8004.4080.1 0.49 +1.5
3,937,537 - Xcc-8004.4080.1 0.49 +0.6
3,937,620 + Xcc-8004.4080.1 0.53 +1.0
3,937,700 + Xcc-8004.4080.1 0.57 -3.3
3,937,866 + Xcc-8004.4080.1 0.65 +0.0
3,937,875 + Xcc-8004.4080.1 0.65 -1.8
3,937,876 - Xcc-8004.4080.1 0.65 +1.7
3,937,876 - Xcc-8004.4080.1 0.65 -2.2
3,937,917 + Xcc-8004.4080.1 0.67 -1.4
3,937,917 + Xcc-8004.4080.1 0.67 -0.7
3,938,052 + Xcc-8004.4080.1 0.74 +1.7
3,938,052 + Xcc-8004.4080.1 0.74 +1.1
3,938,052 + Xcc-8004.4080.1 0.74 +1.0
3,938,053 - Xcc-8004.4080.1 0.74 +0.0
3,938,053 - Xcc-8004.4080.1 0.74 +1.0
3,938,095 - Xcc-8004.4080.1 0.76 -0.3
3,938,185 - Xcc-8004.4080.1 0.80 -0.8
3,938,185 - Xcc-8004.4080.1 0.80 +3.3
3,938,185 - Xcc-8004.4080.1 0.80 -0.5
3,938,185 - Xcc-8004.4080.1 0.80 -0.8
3,938,202 + Xcc-8004.4080.1 0.81 +1.4
3,938,203 - Xcc-8004.4080.1 0.81 -2.8
3,938,360 + Xcc-8004.4080.1 0.89 -0.8
3,938,415 + -1.0
3,938,416 - -1.6
3,938,667 + +2.1
3,938,667 + +0.3
3,938,667 + -1.6
3,938,667 + +2.0
3,938,667 + +1.3
3,938,667 + -0.7
3,938,668 - +1.3
3,938,668 - +0.4
3,938,668 - +1.7
3,938,668 - -2.5
3,938,668 - +2.3
3,938,668 - +0.3
3,938,668 - -0.2
3,938,917 - -2.4
3,939,107 + Xcc-8004.4081.1 0.16 +0.7
3,939,107 + Xcc-8004.4081.1 0.16 +0.3
3,939,108 - Xcc-8004.4081.1 0.16 +1.3
3,939,108 - Xcc-8004.4081.1 0.16 +1.3
3,939,108 - Xcc-8004.4081.1 0.16 +0.6
3,939,108 - Xcc-8004.4081.1 0.16 +1.0
3,939,108 - Xcc-8004.4081.1 0.16 -0.8
3,939,197 + Xcc-8004.4081.1 0.20 -1.1
3,939,198 - Xcc-8004.4081.1 0.20 -2.4
3,939,329 + Xcc-8004.4081.1 0.26 -0.7
3,939,530 + Xcc-8004.4081.1 0.34 +1.1
3,939,591 - Xcc-8004.4081.1 0.36 -1.0
3,939,591 - Xcc-8004.4081.1 0.36 +0.3
3,939,591 - Xcc-8004.4081.1 0.36 -1.5
3,939,596 + Xcc-8004.4081.1 0.37 +1.6
3,939,596 + Xcc-8004.4081.1 0.37 +0.0
3,939,596 + Xcc-8004.4081.1 0.37 -0.7
3,939,596 + Xcc-8004.4081.1 0.37 -0.5

Or see this region's nucleotide sequence