Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.404.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.403.1 and Xcc-8004.404.1 are separated by 440 nucleotidesXcc-8004.404.1 and Xcc-8004.405.1 are separated by 198 nucleotides Xcc-8004.403.1: Xcc-8004.403.1 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14), at 389,765 to 390,796 Xcc-8004.403.1 Xcc-8004.404.1: Xcc-8004.404.1 - Abortive infection bacteriophage resistance protein, at 391,237 to 392,199 Xcc-8004.404.1 Xcc-8004.405.1: Xcc-8004.405.1 - FIG01211796: hypothetical protein, at 392,398 to 393,837 Xcc-8004.405.1 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.404 kb on + strand, within Xcc-8004.403.1at 390.404 kb on + strand, within Xcc-8004.403.1at 390.405 kb on - strand, within Xcc-8004.403.1at 390.794 kb on + strandat 390.794 kb on + strandat 390.898 kb on + strandat 390.902 kb on + strandat 390.903 kb on - strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.918 kb on - strandat 390.918 kb on - strandat 390.918 kb on - strandat 390.921 kb on + strandat 391.000 kb on - strandat 391.074 kb on + strandat 391.074 kb on + strandat 391.075 kb on - strandat 391.140 kb on - strandat 391.149 kb on + strandat 391.213 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.286 kb on - strandat 391.307 kb on - strandat 391.393 kb on + strand, within Xcc-8004.404.1at 391.411 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.448 kb on - strand, within Xcc-8004.404.1at 391.486 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.567 kb on + strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.664 kb on + strand, within Xcc-8004.404.1at 391.665 kb on - strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.726 kb on + strand, within Xcc-8004.404.1at 391.738 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1at 392.086 kb on - strand, within Xcc-8004.404.1at 392.328 kb on - strandat 392.328 kb on - strandat 392.360 kb on + strandat 392.363 kb on + strandat 392.381 kb on + strandat 392.382 kb on - strandat 392.382 kb on - strandat 392.402 kb on + strandat 392.598 kb on - strand, within Xcc-8004.405.1at 392.615 kb on + strand, within Xcc-8004.405.1at 392.666 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.804 kb on + strand, within Xcc-8004.405.1at 392.912 kb on + strand, within Xcc-8004.405.1at 392.912 kb on + strand, within Xcc-8004.405.1at 392.913 kb on - strand, within Xcc-8004.405.1at 392.913 kb on - strand, within Xcc-8004.405.1at 392.939 kb on + strand, within Xcc-8004.405.1at 392.939 kb on + strand, within Xcc-8004.405.1at 392.940 kb on - strand, within Xcc-8004.405.1at 393.005 kb on + strand, within Xcc-8004.405.1at 393.099 kb on - strand, within Xcc-8004.405.1at 393.099 kb on - strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.102 kb on - strand, within Xcc-8004.405.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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390,404 + Xcc-8004.403.1 0.62 -2.9
390,404 + Xcc-8004.403.1 0.62 -1.3
390,405 - Xcc-8004.403.1 0.62 -2.8
390,794 + +1.2
390,794 + +0.0
390,898 + -1.6
390,902 + +0.1
390,903 - -0.4
390,917 + -0.4
390,917 + +2.8
390,917 + -0.9
390,917 + +0.5
390,918 - +0.2
390,918 - -0.2
390,918 - +0.4
390,921 + -1.4
391,000 - -0.9
391,074 + -0.6
391,074 + -0.4
391,075 - -0.1
391,140 - +1.0
391,149 + -1.5
391,213 + +1.2
391,285 + -1.5
391,285 + -2.1
391,285 + -2.1
391,285 + -0.6
391,286 - +0.2
391,307 - -1.1
391,393 + Xcc-8004.404.1 0.16 +0.9
391,411 + Xcc-8004.404.1 0.18 -2.1
391,447 + Xcc-8004.404.1 0.22 +1.4
391,447 + Xcc-8004.404.1 0.22 +1.4
391,448 - Xcc-8004.404.1 0.22 +3.4
391,486 + Xcc-8004.404.1 0.26 -0.9
391,536 + Xcc-8004.404.1 0.31 +0.2
391,536 + Xcc-8004.404.1 0.31 -1.9
391,537 - Xcc-8004.404.1 0.31 -0.0
391,537 - Xcc-8004.404.1 0.31 +1.3
391,567 + Xcc-8004.404.1 0.34 -0.2
391,568 - Xcc-8004.404.1 0.34 +1.6
391,568 - Xcc-8004.404.1 0.34 -1.1
391,570 - Xcc-8004.404.1 0.35 +0.1
391,570 - Xcc-8004.404.1 0.35 +0.9
391,664 + Xcc-8004.404.1 0.44 -0.4
391,665 - Xcc-8004.404.1 0.44 +2.7
391,718 + Xcc-8004.404.1 0.50 -1.5
391,718 + Xcc-8004.404.1 0.50 -1.3
391,718 + Xcc-8004.404.1 0.50 +1.4
391,719 - Xcc-8004.404.1 0.50 +2.2
391,719 - Xcc-8004.404.1 0.50 -2.6
391,719 - Xcc-8004.404.1 0.50 +0.4
391,719 - Xcc-8004.404.1 0.50 -0.6
391,719 - Xcc-8004.404.1 0.50 -2.4
391,726 + Xcc-8004.404.1 0.51 +2.1
391,738 + Xcc-8004.404.1 0.52 +0.6
391,771 + Xcc-8004.404.1 0.55 +0.3
391,771 + Xcc-8004.404.1 0.55 +0.5
391,771 + Xcc-8004.404.1 0.55 -0.8
391,772 - Xcc-8004.404.1 0.56 -0.8
391,772 - Xcc-8004.404.1 0.56 +0.8
391,772 - Xcc-8004.404.1 0.56 -2.6
391,772 - Xcc-8004.404.1 0.56 -1.3
391,774 - Xcc-8004.404.1 0.56 -1.1
391,774 - Xcc-8004.404.1 0.56 +0.8
392,086 - Xcc-8004.404.1 0.88 +0.6
392,328 - -2.1
392,328 - -0.6
392,360 + -2.1
392,363 + -0.7
392,381 + -0.6
392,382 - -0.6
392,382 - -1.7
392,402 + +0.4
392,598 - Xcc-8004.405.1 0.14 +1.1
392,615 + Xcc-8004.405.1 0.15 +3.6
392,666 + Xcc-8004.405.1 0.19 -0.4
392,771 + Xcc-8004.405.1 0.26 +0.8
392,771 + Xcc-8004.405.1 0.26 -0.4
392,771 + Xcc-8004.405.1 0.26 -1.0
392,772 - Xcc-8004.405.1 0.26 +2.2
392,772 - Xcc-8004.405.1 0.26 -1.6
392,772 - Xcc-8004.405.1 0.26 -0.6
392,772 - Xcc-8004.405.1 0.26 +2.1
392,804 + Xcc-8004.405.1 0.28 -0.4
392,912 + Xcc-8004.405.1 0.36 +0.9
392,912 + Xcc-8004.405.1 0.36 -0.4
392,913 - Xcc-8004.405.1 0.36 -1.2
392,913 - Xcc-8004.405.1 0.36 -2.6
392,939 + Xcc-8004.405.1 0.38 +2.4
392,939 + Xcc-8004.405.1 0.38 +0.2
392,940 - Xcc-8004.405.1 0.38 +3.1
393,005 + Xcc-8004.405.1 0.42 +1.4
393,099 - Xcc-8004.405.1 0.49 +1.4
393,099 - Xcc-8004.405.1 0.49 -2.3
393,101 + Xcc-8004.405.1 0.49 +1.9
393,101 + Xcc-8004.405.1 0.49 -1.4
393,101 + Xcc-8004.405.1 0.49 -1.5
393,101 + Xcc-8004.405.1 0.49 -2.8
393,101 + Xcc-8004.405.1 0.49 -1.4
393,102 - Xcc-8004.405.1 0.49 -0.7

Or see this region's nucleotide sequence