Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4023.1 and Xcc-8004.4024.1 overlap by 1 nucleotides Xcc-8004.4024.1 and Xcc-8004.4025.1 are separated by 20 nucleotides Xcc-8004.4025.1 and Xcc-8004.4026.1 are separated by 52 nucleotides
Xcc-8004.4023.1: Xcc-8004.4023.1 - FIG01209934: hypothetical protein, at 3,893,108 to 3,893,860
Xcc-8004.4023.1
Xcc-8004.4024.1: Xcc-8004.4024.1 - 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-), at 3,893,860 to 3,894,609
Xcc-8004.4024.1
Xcc-8004.4025.1: Xcc-8004.4025.1 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 3,894,630 to 3,895,676
Xcc-8004.4025.1
Xcc-8004.4026.1: Xcc-8004.4026.1 - FIG01209666: hypothetical protein, at 3,895,729 to 3,896,133
Xcc-8004.4026.1
Position (kb) 3894
3895
3896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3893.864 kb on + strand at 3893.865 kb on - strand at 3893.889 kb on - strand at 3893.909 kb on + strand at 3893.909 kb on + strand at 3893.910 kb on - strand at 3894.010 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.543 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.638 kb on + strand at 3894.638 kb on + strand at 3894.639 kb on - strand at 3894.652 kb on + strand at 3894.653 kb on - strand at 3894.653 kb on - strand at 3894.810 kb on + strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1 at 3894.958 kb on - strand, within Xcc-8004.4025.1 at 3894.958 kb on - strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.336 kb on + strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.530 kb on + strand, within Xcc-8004.4025.1 at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.680 kb on - strand at 3895.680 kb on - strand at 3895.757 kb on + strand at 3895.757 kb on + strand at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.837 kb on - strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.954 kb on + strand, within Xcc-8004.4026.1 at 3895.955 kb on - strand, within Xcc-8004.4026.1 at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.170 kb on + strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.224 kb on + strand at 3896.224 kb on + strand at 3896.224 kb on + strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,893,864 + +0.3 3,893,865 - -1.8 3,893,889 - +0.3 3,893,909 + -0.2 3,893,909 + -1.5 3,893,910 - -2.1 3,894,010 - Xcc-8004.4024.1 0.20 -0.8 3,894,249 - Xcc-8004.4024.1 0.52 -0.2 3,894,249 - Xcc-8004.4024.1 0.52 -1.5 3,894,249 - Xcc-8004.4024.1 0.52 -0.7 3,894,249 - Xcc-8004.4024.1 0.52 +2.3 3,894,249 - Xcc-8004.4024.1 0.52 -2.4 3,894,249 - Xcc-8004.4024.1 0.52 -0.5 3,894,249 - Xcc-8004.4024.1 0.52 -0.7 3,894,353 + Xcc-8004.4024.1 0.66 -0.7 3,894,353 + Xcc-8004.4024.1 0.66 -1.1 3,894,353 + Xcc-8004.4024.1 0.66 +0.3 3,894,353 + Xcc-8004.4024.1 0.66 -0.2 3,894,353 + Xcc-8004.4024.1 0.66 -1.1 3,894,353 + Xcc-8004.4024.1 0.66 -1.1 3,894,353 + Xcc-8004.4024.1 0.66 -0.7 3,894,353 + Xcc-8004.4024.1 0.66 +0.1 3,894,354 - Xcc-8004.4024.1 0.66 -2.1 3,894,354 - Xcc-8004.4024.1 0.66 -1.8 3,894,354 - Xcc-8004.4024.1 0.66 -2.8 3,894,354 - Xcc-8004.4024.1 0.66 -2.4 3,894,354 - Xcc-8004.4024.1 0.66 -2.0 3,894,354 - Xcc-8004.4024.1 0.66 -0.2 3,894,543 + -1.1 3,894,620 + -1.0 3,894,620 + +2.6 3,894,620 + +0.5 3,894,620 + -0.4 3,894,621 - -3.3 3,894,621 - -2.1 3,894,621 - -3.3 3,894,621 - -0.8 3,894,638 + -1.5 3,894,638 + -1.6 3,894,639 - +0.8 3,894,652 + +0.0 3,894,653 - +0.2 3,894,653 - -0.5 3,894,810 + Xcc-8004.4025.1 0.17 -2.3 3,894,811 - Xcc-8004.4025.1 0.17 -2.3 3,894,811 - Xcc-8004.4025.1 0.17 -2.9 3,894,958 - Xcc-8004.4025.1 0.31 +0.3 3,894,958 - Xcc-8004.4025.1 0.31 -2.0 3,895,027 + Xcc-8004.4025.1 0.38 -2.3 3,895,027 + Xcc-8004.4025.1 0.38 -1.2 3,895,027 + Xcc-8004.4025.1 0.38 -2.7 3,895,027 + Xcc-8004.4025.1 0.38 -3.0 3,895,027 + Xcc-8004.4025.1 0.38 -1.4 3,895,027 + Xcc-8004.4025.1 0.38 -1.8 3,895,027 + Xcc-8004.4025.1 0.38 -2.6 3,895,027 + Xcc-8004.4025.1 0.38 -2.7 3,895,027 + Xcc-8004.4025.1 0.38 -2.0 3,895,027 + Xcc-8004.4025.1 0.38 -0.8 3,895,027 + Xcc-8004.4025.1 0.38 +0.0 3,895,027 + Xcc-8004.4025.1 0.38 -2.3 3,895,027 + Xcc-8004.4025.1 0.38 -0.3 3,895,027 + Xcc-8004.4025.1 0.38 -0.8 3,895,027 + Xcc-8004.4025.1 0.38 +0.0 3,895,027 + Xcc-8004.4025.1 0.38 -1.1 3,895,027 + Xcc-8004.4025.1 0.38 -1.0 3,895,027 + Xcc-8004.4025.1 0.38 -1.6 3,895,027 + Xcc-8004.4025.1 0.38 -0.5 3,895,027 + Xcc-8004.4025.1 0.38 +0.0 3,895,027 + Xcc-8004.4025.1 0.38 -1.6 3,895,027 + Xcc-8004.4025.1 0.38 +0.8 3,895,027 + Xcc-8004.4025.1 0.38 -2.0 3,895,027 + Xcc-8004.4025.1 0.38 +2.3 3,895,028 - Xcc-8004.4025.1 0.38 -1.0 3,895,028 - Xcc-8004.4025.1 0.38 -2.3 3,895,028 - Xcc-8004.4025.1 0.38 -1.8 3,895,028 - Xcc-8004.4025.1 0.38 +2.3 3,895,028 - Xcc-8004.4025.1 0.38 -2.7 3,895,028 - Xcc-8004.4025.1 0.38 -1.6 3,895,028 - Xcc-8004.4025.1 0.38 +1.3 3,895,028 - Xcc-8004.4025.1 0.38 -2.1 3,895,028 - Xcc-8004.4025.1 0.38 -3.3 3,895,028 - Xcc-8004.4025.1 0.38 -0.5 3,895,028 - Xcc-8004.4025.1 0.38 +0.8 3,895,028 - Xcc-8004.4025.1 0.38 -3.5 3,895,028 - Xcc-8004.4025.1 0.38 +0.7 3,895,028 - Xcc-8004.4025.1 0.38 -2.0 3,895,028 - Xcc-8004.4025.1 0.38 -1.0 3,895,028 - Xcc-8004.4025.1 0.38 -3.2 3,895,028 - Xcc-8004.4025.1 0.38 +0.0 3,895,028 - Xcc-8004.4025.1 0.38 -1.2 3,895,028 - Xcc-8004.4025.1 0.38 -2.2 3,895,028 - Xcc-8004.4025.1 0.38 -2.2 3,895,028 - Xcc-8004.4025.1 0.38 -2.0 3,895,028 - Xcc-8004.4025.1 0.38 -1.2 3,895,028 - Xcc-8004.4025.1 0.38 -3.4 3,895,028 - Xcc-8004.4025.1 0.38 -2.1 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 -0.5 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 -1.1 3,895,028 - Xcc-8004.4025.1 0.38 +1.6 3,895,028 - Xcc-8004.4025.1 0.38 +1.0 3,895,028 - Xcc-8004.4025.1 0.38 -2.4 3,895,028 - Xcc-8004.4025.1 0.38 -1.0 3,895,028 - Xcc-8004.4025.1 0.38 -0.8 3,895,028 - Xcc-8004.4025.1 0.38 -2.2 3,895,028 - Xcc-8004.4025.1 0.38 -2.0 3,895,028 - Xcc-8004.4025.1 0.38 -2.9 3,895,028 - Xcc-8004.4025.1 0.38 -1.0 3,895,336 + Xcc-8004.4025.1 0.67 +0.0 3,895,516 - Xcc-8004.4025.1 0.85 -2.4 3,895,516 - Xcc-8004.4025.1 0.85 -1.4 3,895,516 - Xcc-8004.4025.1 0.85 -2.6 3,895,516 - Xcc-8004.4025.1 0.85 +0.8 3,895,530 + Xcc-8004.4025.1 0.86 -0.7 3,895,679 + +0.3 3,895,679 + +0.8 3,895,679 + +1.1 3,895,679 + -1.1 3,895,680 - +0.3 3,895,680 - +1.3 3,895,757 + -2.0 3,895,757 + -0.8 3,895,776 - Xcc-8004.4026.1 0.12 -0.7 3,895,776 - Xcc-8004.4026.1 0.12 -2.7 3,895,776 - Xcc-8004.4026.1 0.12 -0.5 3,895,776 - Xcc-8004.4026.1 0.12 -3.1 3,895,776 - Xcc-8004.4026.1 0.12 -2.4 3,895,837 - Xcc-8004.4026.1 0.27 -3.1 3,895,838 + Xcc-8004.4026.1 0.27 -1.8 3,895,838 + Xcc-8004.4026.1 0.27 -0.4 3,895,838 + Xcc-8004.4026.1 0.27 -2.7 3,895,838 + Xcc-8004.4026.1 0.27 -2.0 3,895,838 + Xcc-8004.4026.1 0.27 -2.7 3,895,838 + Xcc-8004.4026.1 0.27 -0.2 3,895,838 + Xcc-8004.4026.1 0.27 -1.5 3,895,839 - Xcc-8004.4026.1 0.27 -2.1 3,895,839 - Xcc-8004.4026.1 0.27 -1.6 3,895,839 - Xcc-8004.4026.1 0.27 -1.2 3,895,839 - Xcc-8004.4026.1 0.27 -0.5 3,895,839 - Xcc-8004.4026.1 0.27 -0.8 3,895,839 - Xcc-8004.4026.1 0.27 -2.5 3,895,954 + Xcc-8004.4026.1 0.56 -1.5 3,895,955 - Xcc-8004.4026.1 0.56 -1.9 3,896,164 + +0.1 3,896,164 + -0.8 3,896,164 + -0.8 3,896,164 + +1.7 3,896,164 + +1.2 3,896,164 + -0.9 3,896,164 + -0.5 3,896,164 + +0.6 3,896,164 + -0.1 3,896,165 - -0.2 3,896,165 - +1.5 3,896,165 - -0.1 3,896,165 - +0.8 3,896,165 - +2.3 3,896,165 - +2.3 3,896,165 - +1.5 3,896,170 + -0.7 3,896,171 - -1.7 3,896,171 - -0.2 3,896,171 - -3.1 3,896,171 - -3.0 3,896,171 - +0.8 3,896,224 + -2.8 3,896,224 + +0.9 3,896,224 + +0.6 3,896,225 - -1.5 3,896,225 - -0.7 3,896,225 - +0.0 3,896,225 - +2.3 3,896,225 - +1.6 3,896,313 + +1.0 3,896,313 + +1.4 3,896,313 + +3.0 3,896,313 + +2.7 3,896,313 + -1.0 3,896,313 + +2.0 3,896,313 + -0.3 3,896,313 + -2.6 3,896,313 + -0.7 3,896,313 + -1.5 3,896,313 + +0.2 3,896,313 + -1.6 3,896,314 - +0.6 3,896,314 - +0.5 3,896,314 - -2.5 3,896,314 - -1.8 3,896,314 - -2.8 3,896,314 - +0.8 3,896,314 - +0.8 3,896,314 - +1.3 3,896,314 - +1.7 3,896,314 - -0.7
Or see this region's nucleotide sequence