Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4024.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4022.1 and Xcc-8004.4023.1 overlap by 1 nucleotidesXcc-8004.4023.1 and Xcc-8004.4024.1 overlap by 1 nucleotidesXcc-8004.4024.1 and Xcc-8004.4025.1 are separated by 20 nucleotides Xcc-8004.4022.1: Xcc-8004.4022.1 - Molybdenum cofactor biosynthesis protein MoaA, at 3,892,077 to 3,893,108 Xcc-8004.4022.1 Xcc-8004.4023.1: Xcc-8004.4023.1 - FIG01209934: hypothetical protein, at 3,893,108 to 3,893,860 Xcc-8004.4023.1 Xcc-8004.4024.1: Xcc-8004.4024.1 - 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-), at 3,893,860 to 3,894,609 Xcc-8004.4024.1 Xcc-8004.4025.1: Xcc-8004.4025.1 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 3,894,630 to 3,895,676 Xcc-8004.4025.1 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3892.961 kb on - strand, within Xcc-8004.4022.1at 3892.993 kb on + strand, within Xcc-8004.4022.1at 3893.864 kb on + strandat 3893.865 kb on - strandat 3893.889 kb on - strandat 3893.909 kb on + strandat 3893.909 kb on + strandat 3893.910 kb on - strandat 3894.010 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.249 kb on - strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.353 kb on + strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.354 kb on - strand, within Xcc-8004.4024.1at 3894.543 kb on + strandat 3894.620 kb on + strandat 3894.620 kb on + strandat 3894.620 kb on + strandat 3894.620 kb on + strandat 3894.621 kb on - strandat 3894.621 kb on - strandat 3894.621 kb on - strandat 3894.621 kb on - strandat 3894.638 kb on + strandat 3894.638 kb on + strandat 3894.639 kb on - strandat 3894.652 kb on + strandat 3894.653 kb on - strandat 3894.653 kb on - strandat 3894.810 kb on + strand, within Xcc-8004.4025.1at 3894.811 kb on - strand, within Xcc-8004.4025.1at 3894.811 kb on - strand, within Xcc-8004.4025.1at 3894.958 kb on - strand, within Xcc-8004.4025.1at 3894.958 kb on - strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.027 kb on + strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.028 kb on - strand, within Xcc-8004.4025.1at 3895.336 kb on + strand, within Xcc-8004.4025.1at 3895.516 kb on - strand, within Xcc-8004.4025.1at 3895.516 kb on - strand, within Xcc-8004.4025.1at 3895.516 kb on - strand, within Xcc-8004.4025.1at 3895.516 kb on - strand, within Xcc-8004.4025.1at 3895.530 kb on + strand, within Xcc-8004.4025.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,892,961 - Xcc-8004.4022.1 0.86 -0.2
3,892,993 + Xcc-8004.4022.1 0.89 +0.5
3,893,864 + +0.3
3,893,865 - -1.8
3,893,889 - +0.3
3,893,909 + -0.2
3,893,909 + -1.5
3,893,910 - -2.1
3,894,010 - Xcc-8004.4024.1 0.20 -0.8
3,894,249 - Xcc-8004.4024.1 0.52 -0.2
3,894,249 - Xcc-8004.4024.1 0.52 -1.5
3,894,249 - Xcc-8004.4024.1 0.52 -0.7
3,894,249 - Xcc-8004.4024.1 0.52 +2.3
3,894,249 - Xcc-8004.4024.1 0.52 -2.4
3,894,249 - Xcc-8004.4024.1 0.52 -0.5
3,894,249 - Xcc-8004.4024.1 0.52 -0.7
3,894,353 + Xcc-8004.4024.1 0.66 -0.7
3,894,353 + Xcc-8004.4024.1 0.66 -1.1
3,894,353 + Xcc-8004.4024.1 0.66 +0.3
3,894,353 + Xcc-8004.4024.1 0.66 -0.2
3,894,353 + Xcc-8004.4024.1 0.66 -1.1
3,894,353 + Xcc-8004.4024.1 0.66 -1.1
3,894,353 + Xcc-8004.4024.1 0.66 -0.7
3,894,353 + Xcc-8004.4024.1 0.66 +0.1
3,894,354 - Xcc-8004.4024.1 0.66 -2.1
3,894,354 - Xcc-8004.4024.1 0.66 -1.8
3,894,354 - Xcc-8004.4024.1 0.66 -2.8
3,894,354 - Xcc-8004.4024.1 0.66 -2.4
3,894,354 - Xcc-8004.4024.1 0.66 -2.0
3,894,354 - Xcc-8004.4024.1 0.66 -0.2
3,894,543 + -1.1
3,894,620 + -1.0
3,894,620 + +2.6
3,894,620 + +0.5
3,894,620 + -0.4
3,894,621 - -3.3
3,894,621 - -2.1
3,894,621 - -3.3
3,894,621 - -0.8
3,894,638 + -1.5
3,894,638 + -1.6
3,894,639 - +0.8
3,894,652 + +0.0
3,894,653 - +0.2
3,894,653 - -0.5
3,894,810 + Xcc-8004.4025.1 0.17 -2.3
3,894,811 - Xcc-8004.4025.1 0.17 -2.3
3,894,811 - Xcc-8004.4025.1 0.17 -2.9
3,894,958 - Xcc-8004.4025.1 0.31 +0.3
3,894,958 - Xcc-8004.4025.1 0.31 -2.0
3,895,027 + Xcc-8004.4025.1 0.38 -2.3
3,895,027 + Xcc-8004.4025.1 0.38 -1.2
3,895,027 + Xcc-8004.4025.1 0.38 -2.7
3,895,027 + Xcc-8004.4025.1 0.38 -3.0
3,895,027 + Xcc-8004.4025.1 0.38 -1.4
3,895,027 + Xcc-8004.4025.1 0.38 -1.8
3,895,027 + Xcc-8004.4025.1 0.38 -2.6
3,895,027 + Xcc-8004.4025.1 0.38 -2.7
3,895,027 + Xcc-8004.4025.1 0.38 -2.0
3,895,027 + Xcc-8004.4025.1 0.38 -0.8
3,895,027 + Xcc-8004.4025.1 0.38 +0.0
3,895,027 + Xcc-8004.4025.1 0.38 -2.3
3,895,027 + Xcc-8004.4025.1 0.38 -0.3
3,895,027 + Xcc-8004.4025.1 0.38 -0.8
3,895,027 + Xcc-8004.4025.1 0.38 +0.0
3,895,027 + Xcc-8004.4025.1 0.38 -1.1
3,895,027 + Xcc-8004.4025.1 0.38 -1.0
3,895,027 + Xcc-8004.4025.1 0.38 -1.6
3,895,027 + Xcc-8004.4025.1 0.38 -0.5
3,895,027 + Xcc-8004.4025.1 0.38 +0.0
3,895,027 + Xcc-8004.4025.1 0.38 -1.6
3,895,027 + Xcc-8004.4025.1 0.38 +0.8
3,895,027 + Xcc-8004.4025.1 0.38 -2.0
3,895,027 + Xcc-8004.4025.1 0.38 +2.3
3,895,028 - Xcc-8004.4025.1 0.38 -1.0
3,895,028 - Xcc-8004.4025.1 0.38 -2.3
3,895,028 - Xcc-8004.4025.1 0.38 -1.8
3,895,028 - Xcc-8004.4025.1 0.38 +2.3
3,895,028 - Xcc-8004.4025.1 0.38 -2.7
3,895,028 - Xcc-8004.4025.1 0.38 -1.6
3,895,028 - Xcc-8004.4025.1 0.38 +1.3
3,895,028 - Xcc-8004.4025.1 0.38 -2.1
3,895,028 - Xcc-8004.4025.1 0.38 -3.3
3,895,028 - Xcc-8004.4025.1 0.38 -0.5
3,895,028 - Xcc-8004.4025.1 0.38 +0.8
3,895,028 - Xcc-8004.4025.1 0.38 -3.5
3,895,028 - Xcc-8004.4025.1 0.38 +0.7
3,895,028 - Xcc-8004.4025.1 0.38 -2.0
3,895,028 - Xcc-8004.4025.1 0.38 -1.0
3,895,028 - Xcc-8004.4025.1 0.38 -3.2
3,895,028 - Xcc-8004.4025.1 0.38 +0.0
3,895,028 - Xcc-8004.4025.1 0.38 -1.2
3,895,028 - Xcc-8004.4025.1 0.38 -2.2
3,895,028 - Xcc-8004.4025.1 0.38 -2.2
3,895,028 - Xcc-8004.4025.1 0.38 -2.0
3,895,028 - Xcc-8004.4025.1 0.38 -1.2
3,895,028 - Xcc-8004.4025.1 0.38 -3.4
3,895,028 - Xcc-8004.4025.1 0.38 -2.1
3,895,028 - Xcc-8004.4025.1 0.38 -0.2
3,895,028 - Xcc-8004.4025.1 0.38 -0.5
3,895,028 - Xcc-8004.4025.1 0.38 -0.2
3,895,028 - Xcc-8004.4025.1 0.38 -1.1
3,895,028 - Xcc-8004.4025.1 0.38 +1.6
3,895,028 - Xcc-8004.4025.1 0.38 +1.0
3,895,028 - Xcc-8004.4025.1 0.38 -2.4
3,895,028 - Xcc-8004.4025.1 0.38 -1.0
3,895,028 - Xcc-8004.4025.1 0.38 -0.8
3,895,028 - Xcc-8004.4025.1 0.38 -2.2
3,895,028 - Xcc-8004.4025.1 0.38 -2.0
3,895,028 - Xcc-8004.4025.1 0.38 -2.9
3,895,028 - Xcc-8004.4025.1 0.38 -1.0
3,895,336 + Xcc-8004.4025.1 0.67 +0.0
3,895,516 - Xcc-8004.4025.1 0.85 -2.4
3,895,516 - Xcc-8004.4025.1 0.85 -1.4
3,895,516 - Xcc-8004.4025.1 0.85 -2.6
3,895,516 - Xcc-8004.4025.1 0.85 +0.8
3,895,530 + Xcc-8004.4025.1 0.86 -0.7

Or see this region's nucleotide sequence