Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3794.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3791.1 and Xcc-8004.3792.1 are separated by 8 nucleotidesXcc-8004.3792.1 and Xcc-8004.3793.1 are separated by 14 nucleotidesXcc-8004.3793.1 and Xcc-8004.3794.1 overlap by 53 nucleotidesXcc-8004.3794.1 and Xcc-8004.3795.1 are separated by 128 nucleotides Xcc-8004.3791.1: Xcc-8004.3791.1 - Beta-xylosidase (EC 3.2.1.37), at 3,667,903 to 3,669,570 Xcc-8004.3791.1 Xcc-8004.3792.1: Xcc-8004.3792.1 - Mobile element protein, at 3,669,579 to 3,669,764 Xcc-8004.3792.1 Xcc-8004.3793.1: Xcc-8004.3793.1 - Mobile element protein, at 3,669,779 to 3,670,048 Xcc-8004.3793.1 Xcc-8004.3794.1: Xcc-8004.3794.1 - Mobile element protein, at 3,669,996 to 3,670,376 Xcc-8004.3794.1 Xcc-8004.3795.1: Xcc-8004.3795.1 - Histidine kinase/response regulator hybrid protein, at 3,670,505 to 3,672,445 Xcc-8004.3795.1 Position (kb) 3669 3670 3671Strain fitness (log2 ratio) -1 0 1 2at 3669.161 kb on - strand, within Xcc-8004.3791.1at 3669.161 kb on - strand, within Xcc-8004.3791.1at 3669.559 kb on + strandat 3669.569 kb on - strandat 3669.598 kb on - strand, within Xcc-8004.3792.1at 3669.598 kb on - strand, within Xcc-8004.3792.1at 3670.244 kb on - strand, within Xcc-8004.3794.1at 3670.244 kb on - strand, within Xcc-8004.3794.1at 3670.268 kb on - strand, within Xcc-8004.3794.1at 3670.419 kb on + strandat 3670.419 kb on + strandat 3670.528 kb on + strandat 3670.617 kb on + strandat 3670.788 kb on + strand, within Xcc-8004.3795.1at 3671.007 kb on + strand, within Xcc-8004.3795.1at 3671.007 kb on + strand, within Xcc-8004.3795.1at 3671.133 kb on + strand, within Xcc-8004.3795.1at 3671.133 kb on + strand, within Xcc-8004.3795.1at 3671.163 kb on + strand, within Xcc-8004.3795.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,669,161 - Xcc-8004.3791.1 0.75 -0.1
3,669,161 - Xcc-8004.3791.1 0.75 +2.3
3,669,559 + -1.4
3,669,569 - +1.7
3,669,598 - Xcc-8004.3792.1 0.10 -0.9
3,669,598 - Xcc-8004.3792.1 0.10 -0.3
3,670,244 - Xcc-8004.3794.1 0.65 +2.3
3,670,244 - Xcc-8004.3794.1 0.65 -1.0
3,670,268 - Xcc-8004.3794.1 0.71 -1.6
3,670,419 + -0.1
3,670,419 + +0.3
3,670,528 + -0.0
3,670,617 + -1.2
3,670,788 + Xcc-8004.3795.1 0.15 +1.4
3,671,007 + Xcc-8004.3795.1 0.26 +1.4
3,671,007 + Xcc-8004.3795.1 0.26 +1.4
3,671,133 + Xcc-8004.3795.1 0.32 -1.4
3,671,133 + Xcc-8004.3795.1 0.32 +0.5
3,671,163 + Xcc-8004.3795.1 0.34 -1.4

Or see this region's nucleotide sequence