Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.378.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.377.1 and Xcc-8004.378.1 are separated by 123 nucleotidesXcc-8004.378.1 and Xcc-8004.379.1 are separated by 159 nucleotidesXcc-8004.379.1 and Xcc-8004.380.1 are separated by 160 nucleotides Xcc-8004.377.1: Xcc-8004.377.1 - Adenosine deaminase (EC 3.5.4.4), at 360,801 to 362,369 Xcc-8004.377.1 Xcc-8004.378.1: Xcc-8004.378.1 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 362,493 to 363,806 Xcc-8004.378.1 Xcc-8004.379.1: Xcc-8004.379.1 - hypothetical protein, at 363,966 to 364,097 Xcc-8004.379.1 Xcc-8004.380.1: Xcc-8004.380.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 364,258 to 365,238 Xcc-8004.380.1 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 361.606 kb on + strand, within Xcc-8004.377.1at 361.606 kb on + strand, within Xcc-8004.377.1at 361.607 kb on - strand, within Xcc-8004.377.1at 361.607 kb on - strand, within Xcc-8004.377.1at 361.607 kb on - strand, within Xcc-8004.377.1at 361.607 kb on - strand, within Xcc-8004.377.1at 361.847 kb on - strand, within Xcc-8004.377.1at 362.020 kb on + strand, within Xcc-8004.377.1at 362.020 kb on + strand, within Xcc-8004.377.1at 362.143 kb on + strand, within Xcc-8004.377.1at 362.143 kb on + strand, within Xcc-8004.377.1at 362.178 kb on - strand, within Xcc-8004.377.1at 362.369 kb on + strandat 362.507 kb on - strandat 362.507 kb on - strandat 362.591 kb on - strandat 362.630 kb on - strand, within Xcc-8004.378.1at 362.630 kb on - strand, within Xcc-8004.378.1at 362.731 kb on + strand, within Xcc-8004.378.1at 362.732 kb on - strand, within Xcc-8004.378.1at 362.755 kb on + strand, within Xcc-8004.378.1at 362.875 kb on + strand, within Xcc-8004.378.1at 362.875 kb on + strand, within Xcc-8004.378.1at 362.875 kb on + strand, within Xcc-8004.378.1at 362.875 kb on + strand, within Xcc-8004.378.1at 362.875 kb on + strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 362.876 kb on - strand, within Xcc-8004.378.1at 363.414 kb on + strand, within Xcc-8004.378.1at 363.523 kb on + strand, within Xcc-8004.378.1at 363.524 kb on - strand, within Xcc-8004.378.1at 363.715 kb on + strandat 363.715 kb on + strandat 363.715 kb on + strandat 363.716 kb on - strandat 363.716 kb on - strandat 363.716 kb on - strandat 363.891 kb on + strandat 363.906 kb on + strandat 363.906 kb on + strandat 363.906 kb on + strandat 363.906 kb on + strandat 363.907 kb on - strandat 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.806 kb on - strand, within Xcc-8004.380.1at 364.806 kb on - strand, within Xcc-8004.380.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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361,606 + Xcc-8004.377.1 0.51 +2.5
361,606 + Xcc-8004.377.1 0.51 -1.9
361,607 - Xcc-8004.377.1 0.51 -0.6
361,607 - Xcc-8004.377.1 0.51 -0.9
361,607 - Xcc-8004.377.1 0.51 -1.5
361,607 - Xcc-8004.377.1 0.51 -1.7
361,847 - Xcc-8004.377.1 0.67 -0.6
362,020 + Xcc-8004.377.1 0.78 -1.4
362,020 + Xcc-8004.377.1 0.78 -1.3
362,143 + Xcc-8004.377.1 0.86 -1.1
362,143 + Xcc-8004.377.1 0.86 +0.8
362,178 - Xcc-8004.377.1 0.88 +0.2
362,369 + -2.2
362,507 - -2.1
362,507 - +0.5
362,591 - +0.6
362,630 - Xcc-8004.378.1 0.10 -0.6
362,630 - Xcc-8004.378.1 0.10 -0.4
362,731 + Xcc-8004.378.1 0.18 +2.1
362,732 - Xcc-8004.378.1 0.18 +0.4
362,755 + Xcc-8004.378.1 0.20 +0.7
362,875 + Xcc-8004.378.1 0.29 -0.4
362,875 + Xcc-8004.378.1 0.29 +0.4
362,875 + Xcc-8004.378.1 0.29 -2.3
362,875 + Xcc-8004.378.1 0.29 +0.4
362,875 + Xcc-8004.378.1 0.29 -0.1
362,876 - Xcc-8004.378.1 0.29 -0.7
362,876 - Xcc-8004.378.1 0.29 -0.9
362,876 - Xcc-8004.378.1 0.29 -2.5
362,876 - Xcc-8004.378.1 0.29 +0.4
362,876 - Xcc-8004.378.1 0.29 +0.5
362,876 - Xcc-8004.378.1 0.29 +0.4
362,876 - Xcc-8004.378.1 0.29 +2.0
362,876 - Xcc-8004.378.1 0.29 +1.4
362,876 - Xcc-8004.378.1 0.29 -0.0
363,414 + Xcc-8004.378.1 0.70 +1.4
363,523 + Xcc-8004.378.1 0.78 +0.4
363,524 - Xcc-8004.378.1 0.78 +0.3
363,715 + +0.1
363,715 + -0.3
363,715 + +0.7
363,716 - +0.1
363,716 - +0.0
363,716 - -1.6
363,891 + -0.0
363,906 + -0.9
363,906 + +1.6
363,906 + -1.4
363,906 + -0.3
363,907 - +0.3
364,652 + Xcc-8004.380.1 0.40 -1.6
364,652 + Xcc-8004.380.1 0.40 -1.5
364,652 + Xcc-8004.380.1 0.40 +2.4
364,652 + Xcc-8004.380.1 0.40 +0.1
364,653 - Xcc-8004.380.1 0.40 -0.2
364,653 - Xcc-8004.380.1 0.40 -0.0
364,653 - Xcc-8004.380.1 0.40 +3.4
364,653 - Xcc-8004.380.1 0.40 -0.5
364,805 + Xcc-8004.380.1 0.56 -0.9
364,805 + Xcc-8004.380.1 0.56 +2.4
364,805 + Xcc-8004.380.1 0.56 -0.6
364,805 + Xcc-8004.380.1 0.56 +0.1
364,805 + Xcc-8004.380.1 0.56 +2.6
364,806 - Xcc-8004.380.1 0.56 +0.3
364,806 - Xcc-8004.380.1 0.56 -0.9

Or see this region's nucleotide sequence