Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3736.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3733.1 and Xcc-8004.3734.1 overlap by 14 nucleotidesXcc-8004.3734.1 and Xcc-8004.3735.1 are separated by 4 nucleotidesXcc-8004.3735.1 and Xcc-8004.3736.1 overlap by 4 nucleotidesXcc-8004.3736.1 and Xcc-8004.3737.1 overlap by 4 nucleotidesXcc-8004.3737.1 and Xcc-8004.3738.1 are separated by 10 nucleotides Xcc-8004.3733.1: Xcc-8004.3733.1 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 3,609,245 to 3,610,252 Xcc-8004.3733.1 Xcc-8004.3734.1: Xcc-8004.3734.1 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 3,610,239 to 3,610,883 Xcc-8004.3734.1 Xcc-8004.3735.1: Xcc-8004.3735.1 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 3,610,888 to 3,611,148 Xcc-8004.3735.1 Xcc-8004.3736.1: Xcc-8004.3736.1 - HpaA protein, at 3,611,145 to 3,611,960 Xcc-8004.3736.1 Xcc-8004.3737.1: Xcc-8004.3737.1 - hypothetical protein, at 3,611,957 to 3,612,904 Xcc-8004.3737.1 Xcc-8004.3738.1: Xcc-8004.3738.1 - HrpD6 protein, at 3,612,915 to 3,613,157 Xcc-8004.3738.1 Position (kb) 3611 3612Strain fitness (log2 ratio) -2 -1 0 1 2at 3610.155 kb on - strandat 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.510 kb on + strand, within Xcc-8004.3734.1at 3610.511 kb on - strand, within Xcc-8004.3734.1at 3610.511 kb on - strand, within Xcc-8004.3734.1at 3610.716 kb on + strand, within Xcc-8004.3734.1at 3610.717 kb on - strand, within Xcc-8004.3734.1at 3612.026 kb on + strandat 3612.027 kb on - strandat 3612.029 kb on - strandat 3612.029 kb on - strandat 3612.029 kb on - strandat 3612.029 kb on - strandat 3612.034 kb on - strandat 3612.249 kb on + strand, within Xcc-8004.3737.1at 3612.249 kb on + strand, within Xcc-8004.3737.1at 3612.333 kb on + strand, within Xcc-8004.3737.1at 3612.422 kb on - strand, within Xcc-8004.3737.1at 3612.422 kb on - strand, within Xcc-8004.3737.1at 3612.600 kb on + strand, within Xcc-8004.3737.1at 3612.620 kb on - strand, within Xcc-8004.3737.1at 3612.726 kb on + strand, within Xcc-8004.3737.1at 3612.810 kb on - strandat 3612.842 kb on + strandat 3612.951 kb on - strand, within Xcc-8004.3738.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,610,155 - +0.6
3,610,312 + Xcc-8004.3734.1 0.11 -1.2
3,610,312 + Xcc-8004.3734.1 0.11 +1.3
3,610,312 + Xcc-8004.3734.1 0.11 +1.0
3,610,510 + Xcc-8004.3734.1 0.42 +0.1
3,610,511 - Xcc-8004.3734.1 0.42 +0.6
3,610,511 - Xcc-8004.3734.1 0.42 -0.9
3,610,716 + Xcc-8004.3734.1 0.74 +0.9
3,610,717 - Xcc-8004.3734.1 0.74 +0.6
3,612,026 + +0.2
3,612,027 - -0.8
3,612,029 - +1.0
3,612,029 - +0.6
3,612,029 - -2.1
3,612,029 - -0.5
3,612,034 - -1.0
3,612,249 + Xcc-8004.3737.1 0.31 -0.6
3,612,249 + Xcc-8004.3737.1 0.31 +0.6
3,612,333 + Xcc-8004.3737.1 0.40 -0.5
3,612,422 - Xcc-8004.3737.1 0.49 -1.6
3,612,422 - Xcc-8004.3737.1 0.49 -1.0
3,612,600 + Xcc-8004.3737.1 0.68 +1.0
3,612,620 - Xcc-8004.3737.1 0.70 -0.1
3,612,726 + Xcc-8004.3737.1 0.81 +1.5
3,612,810 - -0.8
3,612,842 + +0.2
3,612,951 - Xcc-8004.3738.1 0.15 +2.1

Or see this region's nucleotide sequence