Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3645.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3643.1 and Xcc-8004.3644.1 are separated by 140 nucleotidesXcc-8004.3644.1 and Xcc-8004.3645.1 are separated by 157 nucleotidesXcc-8004.3645.1 and Xcc-8004.3646.1 are separated by 101 nucleotides Xcc-8004.3643.1: Xcc-8004.3643.1 - COG1451: Predicted metal-dependent hydrolase, at 3,522,344 to 3,522,844 Xcc-8004.3643.1 Xcc-8004.3644.1: Xcc-8004.3644.1 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 3,522,985 to 3,523,119 Xcc-8004.3644.1 Xcc-8004.3645.1: Xcc-8004.3645.1 - Leucine dehydrogenase (EC 1.4.1.9), at 3,523,277 to 3,524,377 Xcc-8004.3645.1 Xcc-8004.3646.1: Xcc-8004.3646.1 - Outer membrane stress sensor protease DegS, at 3,524,479 to 3,527,340 Xcc-8004.3646.1 Position (kb) 3523 3524 3525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3522.359 kb on + strandat 3522.360 kb on - strandat 3522.360 kb on - strandat 3522.360 kb on - strandat 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.485 kb on + strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.486 kb on - strand, within Xcc-8004.3643.1at 3522.491 kb on + strand, within Xcc-8004.3643.1at 3522.491 kb on + strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.492 kb on - strand, within Xcc-8004.3643.1at 3522.501 kb on - strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.515 kb on + strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.516 kb on - strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.551 kb on + strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.552 kb on - strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.749 kb on + strand, within Xcc-8004.3643.1at 3522.750 kb on - strand, within Xcc-8004.3643.1at 3522.750 kb on - strand, within Xcc-8004.3643.1at 3522.779 kb on + strand, within Xcc-8004.3643.1at 3522.780 kb on - strand, within Xcc-8004.3643.1at 3522.809 kb on + strandat 3522.809 kb on + strandat 3522.810 kb on - strandat 3522.810 kb on - strandat 3522.810 kb on - strandat 3522.930 kb on + strandat 3522.930 kb on + strandat 3522.931 kb on - strandat 3522.931 kb on - strandat 3522.931 kb on - strandat 3522.938 kb on + strandat 3522.938 kb on + strandat 3522.939 kb on - strandat 3522.939 kb on - strandat 3522.939 kb on - strandat 3522.939 kb on - strandat 3522.968 kb on + strandat 3523.129 kb on + strandat 3523.130 kb on - strandat 3523.130 kb on - strandat 3523.130 kb on - strandat 3523.130 kb on - strandat 3523.130 kb on - strandat 3523.130 kb on - strandat 3523.298 kb on - strandat 3523.416 kb on - strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.472 kb on + strand, within Xcc-8004.3645.1at 3523.473 kb on - strand, within Xcc-8004.3645.1at 3523.473 kb on - strand, within Xcc-8004.3645.1at 3523.601 kb on + strand, within Xcc-8004.3645.1at 3523.601 kb on + strand, within Xcc-8004.3645.1at 3523.601 kb on + strand, within Xcc-8004.3645.1at 3523.601 kb on + strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.602 kb on - strand, within Xcc-8004.3645.1at 3523.652 kb on + strand, within Xcc-8004.3645.1at 3523.653 kb on - strand, within Xcc-8004.3645.1at 3523.653 kb on - strand, within Xcc-8004.3645.1at 3523.653 kb on - strand, within Xcc-8004.3645.1at 3523.667 kb on + strand, within Xcc-8004.3645.1at 3523.667 kb on + strand, within Xcc-8004.3645.1at 3523.667 kb on + strand, within Xcc-8004.3645.1at 3523.667 kb on + strand, within Xcc-8004.3645.1at 3523.668 kb on - strand, within Xcc-8004.3645.1at 3523.871 kb on + strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3523.872 kb on - strand, within Xcc-8004.3645.1at 3524.111 kb on + strand, within Xcc-8004.3645.1at 3524.112 kb on - strand, within Xcc-8004.3645.1at 3524.112 kb on - strand, within Xcc-8004.3645.1at 3524.123 kb on + strand, within Xcc-8004.3645.1at 3524.123 kb on + strand, within Xcc-8004.3645.1at 3524.123 kb on + strand, within Xcc-8004.3645.1at 3524.123 kb on + strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.124 kb on - strand, within Xcc-8004.3645.1at 3524.174 kb on + strand, within Xcc-8004.3645.1at 3524.174 kb on + strand, within Xcc-8004.3645.1at 3524.174 kb on + strand, within Xcc-8004.3645.1at 3524.175 kb on - strand, within Xcc-8004.3645.1at 3524.175 kb on - strand, within Xcc-8004.3645.1at 3524.213 kb on + strand, within Xcc-8004.3645.1at 3524.213 kb on + strand, within Xcc-8004.3645.1at 3524.213 kb on + strand, within Xcc-8004.3645.1at 3524.213 kb on + strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.214 kb on - strand, within Xcc-8004.3645.1at 3524.375 kb on + strandat 3524.495 kb on + strandat 3524.495 kb on + strandat 3524.495 kb on + strandat 3524.495 kb on + strandat 3524.495 kb on + strandat 3524.496 kb on - strandat 3524.747 kb on + strandat 3524.748 kb on - strandat 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.861 kb on + strand, within Xcc-8004.3646.1at 3524.862 kb on - strand, within Xcc-8004.3646.1at 3524.862 kb on - strand, within Xcc-8004.3646.1at 3524.862 kb on - strand, within Xcc-8004.3646.1at 3524.862 kb on - strand, within Xcc-8004.3646.1at 3524.876 kb on + strand, within Xcc-8004.3646.1at 3524.877 kb on - strand, within Xcc-8004.3646.1at 3524.877 kb on - strand, within Xcc-8004.3646.1at 3524.877 kb on - strand, within Xcc-8004.3646.1at 3524.877 kb on - strand, within Xcc-8004.3646.1at 3524.877 kb on - strand, within Xcc-8004.3646.1at 3524.939 kb on + strand, within Xcc-8004.3646.1at 3524.939 kb on + strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.940 kb on - strand, within Xcc-8004.3646.1at 3524.951 kb on + strand, within Xcc-8004.3646.1at 3525.071 kb on + strand, within Xcc-8004.3646.1at 3525.071 kb on + strand, within Xcc-8004.3646.1at 3525.072 kb on - strand, within Xcc-8004.3646.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,522,359 + +1.6
3,522,360 - +0.2
3,522,360 - +1.5
3,522,360 - -0.1
3,522,485 + Xcc-8004.3643.1 0.28 +0.2
3,522,485 + Xcc-8004.3643.1 0.28 -0.1
3,522,485 + Xcc-8004.3643.1 0.28 +0.0
3,522,485 + Xcc-8004.3643.1 0.28 +0.4
3,522,485 + Xcc-8004.3643.1 0.28 +1.0
3,522,485 + Xcc-8004.3643.1 0.28 -0.3
3,522,486 - Xcc-8004.3643.1 0.28 -1.1
3,522,486 - Xcc-8004.3643.1 0.28 +2.0
3,522,486 - Xcc-8004.3643.1 0.28 +2.3
3,522,486 - Xcc-8004.3643.1 0.28 -2.9
3,522,491 + Xcc-8004.3643.1 0.29 +0.4
3,522,491 + Xcc-8004.3643.1 0.29 -2.5
3,522,492 - Xcc-8004.3643.1 0.30 -0.1
3,522,492 - Xcc-8004.3643.1 0.30 +0.9
3,522,492 - Xcc-8004.3643.1 0.30 -1.6
3,522,501 - Xcc-8004.3643.1 0.31 -2.3
3,522,515 + Xcc-8004.3643.1 0.34 +1.6
3,522,515 + Xcc-8004.3643.1 0.34 +2.2
3,522,515 + Xcc-8004.3643.1 0.34 -3.9
3,522,515 + Xcc-8004.3643.1 0.34 -0.1
3,522,515 + Xcc-8004.3643.1 0.34 -2.0
3,522,516 - Xcc-8004.3643.1 0.34 -0.2
3,522,516 - Xcc-8004.3643.1 0.34 +2.9
3,522,516 - Xcc-8004.3643.1 0.34 -2.3
3,522,516 - Xcc-8004.3643.1 0.34 +0.3
3,522,516 - Xcc-8004.3643.1 0.34 -0.6
3,522,551 + Xcc-8004.3643.1 0.41 -2.7
3,522,551 + Xcc-8004.3643.1 0.41 +1.2
3,522,551 + Xcc-8004.3643.1 0.41 +2.2
3,522,552 - Xcc-8004.3643.1 0.42 -0.5
3,522,552 - Xcc-8004.3643.1 0.42 +1.6
3,522,552 - Xcc-8004.3643.1 0.42 +1.5
3,522,552 - Xcc-8004.3643.1 0.42 -1.9
3,522,749 + Xcc-8004.3643.1 0.81 -3.8
3,522,749 + Xcc-8004.3643.1 0.81 -0.9
3,522,749 + Xcc-8004.3643.1 0.81 +0.1
3,522,749 + Xcc-8004.3643.1 0.81 -0.1
3,522,749 + Xcc-8004.3643.1 0.81 -0.2
3,522,749 + Xcc-8004.3643.1 0.81 +0.0
3,522,750 - Xcc-8004.3643.1 0.81 +2.2
3,522,750 - Xcc-8004.3643.1 0.81 +0.0
3,522,779 + Xcc-8004.3643.1 0.87 -0.4
3,522,780 - Xcc-8004.3643.1 0.87 -0.8
3,522,809 + +2.9
3,522,809 + -0.7
3,522,810 - +2.2
3,522,810 - +1.1
3,522,810 - -0.5
3,522,930 + -1.7
3,522,930 + -0.5
3,522,931 - +0.6
3,522,931 - -0.1
3,522,931 - +1.0
3,522,938 + -0.0
3,522,938 + -1.3
3,522,939 - +1.4
3,522,939 - +1.6
3,522,939 - -0.8
3,522,939 - +0.3
3,522,968 + +2.2
3,523,129 + -0.6
3,523,130 - -2.8
3,523,130 - -0.4
3,523,130 - -0.5
3,523,130 - +0.2
3,523,130 - -2.5
3,523,130 - -2.0
3,523,298 - +1.6
3,523,416 - Xcc-8004.3645.1 0.13 -1.0
3,523,472 + Xcc-8004.3645.1 0.18 +0.4
3,523,472 + Xcc-8004.3645.1 0.18 +1.2
3,523,472 + Xcc-8004.3645.1 0.18 -0.8
3,523,472 + Xcc-8004.3645.1 0.18 -2.6
3,523,472 + Xcc-8004.3645.1 0.18 -0.8
3,523,472 + Xcc-8004.3645.1 0.18 -1.9
3,523,473 - Xcc-8004.3645.1 0.18 -0.5
3,523,473 - Xcc-8004.3645.1 0.18 -1.9
3,523,601 + Xcc-8004.3645.1 0.29 -0.0
3,523,601 + Xcc-8004.3645.1 0.29 -1.7
3,523,601 + Xcc-8004.3645.1 0.29 -0.8
3,523,601 + Xcc-8004.3645.1 0.29 -0.1
3,523,602 - Xcc-8004.3645.1 0.30 +3.1
3,523,602 - Xcc-8004.3645.1 0.30 +2.2
3,523,602 - Xcc-8004.3645.1 0.30 -1.5
3,523,602 - Xcc-8004.3645.1 0.30 +1.3
3,523,602 - Xcc-8004.3645.1 0.30 -1.1
3,523,602 - Xcc-8004.3645.1 0.30 +0.6
3,523,652 + Xcc-8004.3645.1 0.34 -1.8
3,523,653 - Xcc-8004.3645.1 0.34 +0.2
3,523,653 - Xcc-8004.3645.1 0.34 -2.7
3,523,653 - Xcc-8004.3645.1 0.34 -0.3
3,523,667 + Xcc-8004.3645.1 0.35 +0.2
3,523,667 + Xcc-8004.3645.1 0.35 -2.0
3,523,667 + Xcc-8004.3645.1 0.35 -1.3
3,523,667 + Xcc-8004.3645.1 0.35 +2.2
3,523,668 - Xcc-8004.3645.1 0.36 +0.6
3,523,871 + Xcc-8004.3645.1 0.54 +0.6
3,523,872 - Xcc-8004.3645.1 0.54 +0.6
3,523,872 - Xcc-8004.3645.1 0.54 -0.8
3,523,872 - Xcc-8004.3645.1 0.54 -1.5
3,523,872 - Xcc-8004.3645.1 0.54 -1.9
3,523,872 - Xcc-8004.3645.1 0.54 -1.0
3,523,872 - Xcc-8004.3645.1 0.54 -0.4
3,523,872 - Xcc-8004.3645.1 0.54 +0.2
3,523,872 - Xcc-8004.3645.1 0.54 -0.4
3,523,872 - Xcc-8004.3645.1 0.54 -0.2
3,524,111 + Xcc-8004.3645.1 0.76 +1.2
3,524,112 - Xcc-8004.3645.1 0.76 -0.7
3,524,112 - Xcc-8004.3645.1 0.76 -0.4
3,524,123 + Xcc-8004.3645.1 0.77 +0.3
3,524,123 + Xcc-8004.3645.1 0.77 +1.2
3,524,123 + Xcc-8004.3645.1 0.77 +2.2
3,524,123 + Xcc-8004.3645.1 0.77 -2.7
3,524,124 - Xcc-8004.3645.1 0.77 -2.5
3,524,124 - Xcc-8004.3645.1 0.77 -2.2
3,524,124 - Xcc-8004.3645.1 0.77 -0.3
3,524,124 - Xcc-8004.3645.1 0.77 -1.2
3,524,124 - Xcc-8004.3645.1 0.77 -2.9
3,524,124 - Xcc-8004.3645.1 0.77 -0.1
3,524,124 - Xcc-8004.3645.1 0.77 -2.4
3,524,124 - Xcc-8004.3645.1 0.77 +4.2
3,524,124 - Xcc-8004.3645.1 0.77 +1.4
3,524,124 - Xcc-8004.3645.1 0.77 -2.0
3,524,124 - Xcc-8004.3645.1 0.77 -1.4
3,524,174 + Xcc-8004.3645.1 0.81 -0.3
3,524,174 + Xcc-8004.3645.1 0.81 -1.1
3,524,174 + Xcc-8004.3645.1 0.81 -0.3
3,524,175 - Xcc-8004.3645.1 0.82 -1.3
3,524,175 - Xcc-8004.3645.1 0.82 +2.2
3,524,213 + Xcc-8004.3645.1 0.85 -0.8
3,524,213 + Xcc-8004.3645.1 0.85 -2.0
3,524,213 + Xcc-8004.3645.1 0.85 +0.1
3,524,213 + Xcc-8004.3645.1 0.85 -2.3
3,524,214 - Xcc-8004.3645.1 0.85 -0.1
3,524,214 - Xcc-8004.3645.1 0.85 +1.8
3,524,214 - Xcc-8004.3645.1 0.85 -0.3
3,524,214 - Xcc-8004.3645.1 0.85 -0.5
3,524,214 - Xcc-8004.3645.1 0.85 -1.1
3,524,214 - Xcc-8004.3645.1 0.85 -2.3
3,524,375 + -2.3
3,524,495 + -1.7
3,524,495 + +0.6
3,524,495 + +0.2
3,524,495 + -0.9
3,524,495 + +0.2
3,524,496 - -1.0
3,524,747 + +1.8
3,524,748 - +1.3
3,524,861 + Xcc-8004.3646.1 0.13 -2.6
3,524,861 + Xcc-8004.3646.1 0.13 +0.9
3,524,861 + Xcc-8004.3646.1 0.13 +1.2
3,524,861 + Xcc-8004.3646.1 0.13 -2.5
3,524,861 + Xcc-8004.3646.1 0.13 +2.0
3,524,861 + Xcc-8004.3646.1 0.13 +0.9
3,524,862 - Xcc-8004.3646.1 0.13 -0.6
3,524,862 - Xcc-8004.3646.1 0.13 +0.4
3,524,862 - Xcc-8004.3646.1 0.13 +0.8
3,524,862 - Xcc-8004.3646.1 0.13 +1.9
3,524,876 + Xcc-8004.3646.1 0.14 +0.7
3,524,877 - Xcc-8004.3646.1 0.14 +0.2
3,524,877 - Xcc-8004.3646.1 0.14 +1.5
3,524,877 - Xcc-8004.3646.1 0.14 +1.4
3,524,877 - Xcc-8004.3646.1 0.14 +0.3
3,524,877 - Xcc-8004.3646.1 0.14 +0.2
3,524,939 + Xcc-8004.3646.1 0.16 +1.1
3,524,939 + Xcc-8004.3646.1 0.16 +0.2
3,524,940 - Xcc-8004.3646.1 0.16 +0.6
3,524,940 - Xcc-8004.3646.1 0.16 +0.3
3,524,940 - Xcc-8004.3646.1 0.16 -1.7
3,524,940 - Xcc-8004.3646.1 0.16 -1.3
3,524,940 - Xcc-8004.3646.1 0.16 +0.4
3,524,940 - Xcc-8004.3646.1 0.16 -1.3
3,524,940 - Xcc-8004.3646.1 0.16 -0.6
3,524,951 + Xcc-8004.3646.1 0.16 -1.9
3,525,071 + Xcc-8004.3646.1 0.21 -1.1
3,525,071 + Xcc-8004.3646.1 0.21 -0.6
3,525,072 - Xcc-8004.3646.1 0.21 +0.9

Or see this region's nucleotide sequence