Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3631.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3629.1 and Xcc-8004.3630.1 are separated by 157 nucleotidesXcc-8004.3630.1 and Xcc-8004.3631.1 are separated by 130 nucleotidesXcc-8004.3631.1 and Xcc-8004.3632.1 are separated by 189 nucleotidesXcc-8004.3632.1 and Xcc-8004.3633.1 are separated by 101 nucleotides Xcc-8004.3629.1: Xcc-8004.3629.1 - Cation transport protein, at 3,513,858 to 3,514,820 Xcc-8004.3629.1 Xcc-8004.3630.1: Xcc-8004.3630.1 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 3,514,978 to 3,515,451 Xcc-8004.3630.1 Xcc-8004.3631.1: Xcc-8004.3631.1 - Putative heat shock protein YegD, at 3,515,582 to 3,516,964 Xcc-8004.3631.1 Xcc-8004.3632.1: Xcc-8004.3632.1 - FIG01209689: hypothetical protein, at 3,517,154 to 3,517,339 Xcc-8004.3632.1 Xcc-8004.3633.1: Xcc-8004.3633.1 - FIG01210834: hypothetical protein, at 3,517,441 to 3,518,325 Xcc-8004.3633.1 Position (kb) 3515 3516 3517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3514.899 kb on + strandat 3514.955 kb on + strandat 3514.955 kb on + strandat 3514.955 kb on + strandat 3514.956 kb on - strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.515 kb on - strandat 3515.546 kb on + strandat 3515.546 kb on + strandat 3515.546 kb on + strandat 3515.547 kb on - strandat 3515.549 kb on + strandat 3515.549 kb on + strandat 3515.549 kb on + strandat 3515.550 kb on - strandat 3515.550 kb on - strandat 3515.693 kb on + strandat 3515.693 kb on + strandat 3515.693 kb on + strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.878 kb on - strand, within Xcc-8004.3631.1at 3515.878 kb on - strand, within Xcc-8004.3631.1at 3515.922 kb on - strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.299 kb on - strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.592 kb on + strand, within Xcc-8004.3631.1at 3516.731 kb on - strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.735 kb on - strand, within Xcc-8004.3631.1at 3516.833 kb on + strandat 3516.833 kb on + strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.835 kb on + strandat 3516.963 kb on - strandat 3516.973 kb on + strandat 3516.973 kb on + strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.987 kb on + strandat 3516.988 kb on - strandat 3516.988 kb on - strandat 3517.104 kb on + strandat 3517.109 kb on + strandat 3517.142 kb on - strandat 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.238 kb on - strand, within Xcc-8004.3632.1at 3517.452 kb on - strandat 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.718 kb on - strand, within Xcc-8004.3633.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,514,899 + +2.5
3,514,955 + +0.9
3,514,955 + -1.4
3,514,955 + -1.3
3,514,956 - +1.2
3,515,014 + +0.8
3,515,014 + -1.0
3,515,014 + -1.4
3,515,014 + -2.4
3,515,014 + -1.0
3,515,014 + +1.7
3,515,014 + -0.6
3,515,015 - +0.7
3,515,015 - -3.1
3,515,015 - +0.2
3,515,015 - -2.6
3,515,015 - +0.2
3,515,015 - -0.2
3,515,015 - -0.6
3,515,015 - -0.3
3,515,077 + Xcc-8004.3630.1 0.21 +0.8
3,515,077 + Xcc-8004.3630.1 0.21 +1.8
3,515,077 + Xcc-8004.3630.1 0.21 +3.5
3,515,078 - Xcc-8004.3630.1 0.21 +0.7
3,515,078 - Xcc-8004.3630.1 0.21 +2.2
3,515,078 - Xcc-8004.3630.1 0.21 -2.0
3,515,515 - -0.8
3,515,546 + +0.2
3,515,546 + +4.2
3,515,546 + -0.2
3,515,547 - -1.8
3,515,549 + -0.5
3,515,549 + -0.7
3,515,549 + -0.4
3,515,550 - -0.7
3,515,550 - -3.0
3,515,693 + -1.6
3,515,693 + +1.6
3,515,693 + -2.0
3,515,694 - -1.5
3,515,694 - -3.2
3,515,694 - -0.1
3,515,694 - -0.5
3,515,751 - Xcc-8004.3631.1 0.12 -0.4
3,515,751 - Xcc-8004.3631.1 0.12 +2.9
3,515,751 - Xcc-8004.3631.1 0.12 +0.5
3,515,877 + Xcc-8004.3631.1 0.21 -1.5
3,515,877 + Xcc-8004.3631.1 0.21 +0.8
3,515,877 + Xcc-8004.3631.1 0.21 +0.6
3,515,877 + Xcc-8004.3631.1 0.21 -1.3
3,515,878 - Xcc-8004.3631.1 0.21 +1.1
3,515,878 - Xcc-8004.3631.1 0.21 -0.6
3,515,922 - Xcc-8004.3631.1 0.25 -1.7
3,515,945 + Xcc-8004.3631.1 0.26 -1.4
3,515,945 + Xcc-8004.3631.1 0.26 -0.1
3,515,945 + Xcc-8004.3631.1 0.26 -0.6
3,515,945 + Xcc-8004.3631.1 0.26 +0.2
3,515,945 + Xcc-8004.3631.1 0.26 +0.3
3,515,945 + Xcc-8004.3631.1 0.26 +1.9
3,515,946 - Xcc-8004.3631.1 0.26 -0.4
3,515,946 - Xcc-8004.3631.1 0.26 -1.0
3,515,946 - Xcc-8004.3631.1 0.26 -0.9
3,515,946 - Xcc-8004.3631.1 0.26 +1.7
3,516,254 + Xcc-8004.3631.1 0.49 +1.4
3,516,254 + Xcc-8004.3631.1 0.49 +1.1
3,516,254 + Xcc-8004.3631.1 0.49 -0.6
3,516,255 - Xcc-8004.3631.1 0.49 +1.1
3,516,255 - Xcc-8004.3631.1 0.49 -0.6
3,516,299 - Xcc-8004.3631.1 0.52 +1.2
3,516,425 + Xcc-8004.3631.1 0.61 -1.2
3,516,425 + Xcc-8004.3631.1 0.61 +0.9
3,516,425 + Xcc-8004.3631.1 0.61 +1.6
3,516,425 + Xcc-8004.3631.1 0.61 -1.0
3,516,425 + Xcc-8004.3631.1 0.61 +0.6
3,516,425 + Xcc-8004.3631.1 0.61 -1.0
3,516,426 - Xcc-8004.3631.1 0.61 -1.6
3,516,426 - Xcc-8004.3631.1 0.61 -2.5
3,516,426 - Xcc-8004.3631.1 0.61 -0.6
3,516,426 - Xcc-8004.3631.1 0.61 -1.1
3,516,426 - Xcc-8004.3631.1 0.61 -0.6
3,516,426 - Xcc-8004.3631.1 0.61 +0.1
3,516,426 - Xcc-8004.3631.1 0.61 +2.2
3,516,426 - Xcc-8004.3631.1 0.61 +0.9
3,516,473 + Xcc-8004.3631.1 0.64 +0.2
3,516,473 + Xcc-8004.3631.1 0.64 +1.7
3,516,473 + Xcc-8004.3631.1 0.64 -1.0
3,516,473 + Xcc-8004.3631.1 0.64 -0.2
3,516,473 + Xcc-8004.3631.1 0.64 +0.2
3,516,474 - Xcc-8004.3631.1 0.64 -0.4
3,516,474 - Xcc-8004.3631.1 0.64 -0.0
3,516,474 - Xcc-8004.3631.1 0.64 -0.6
3,516,474 - Xcc-8004.3631.1 0.64 -2.2
3,516,533 + Xcc-8004.3631.1 0.69 +0.6
3,516,533 + Xcc-8004.3631.1 0.69 +0.9
3,516,533 + Xcc-8004.3631.1 0.69 -0.8
3,516,533 + Xcc-8004.3631.1 0.69 +0.6
3,516,533 + Xcc-8004.3631.1 0.69 -0.2
3,516,533 + Xcc-8004.3631.1 0.69 -0.7
3,516,534 - Xcc-8004.3631.1 0.69 +0.2
3,516,534 - Xcc-8004.3631.1 0.69 -1.4
3,516,534 - Xcc-8004.3631.1 0.69 +1.3
3,516,534 - Xcc-8004.3631.1 0.69 -1.3
3,516,534 - Xcc-8004.3631.1 0.69 +1.3
3,516,534 - Xcc-8004.3631.1 0.69 +0.8
3,516,592 + Xcc-8004.3631.1 0.73 -0.2
3,516,731 - Xcc-8004.3631.1 0.83 +0.4
3,516,734 + Xcc-8004.3631.1 0.83 -0.4
3,516,734 + Xcc-8004.3631.1 0.83 -1.6
3,516,734 + Xcc-8004.3631.1 0.83 -2.3
3,516,734 + Xcc-8004.3631.1 0.83 -0.6
3,516,734 + Xcc-8004.3631.1 0.83 -0.8
3,516,735 - Xcc-8004.3631.1 0.83 +2.4
3,516,833 + -1.3
3,516,833 + +1.9
3,516,834 - +0.8
3,516,834 - -0.7
3,516,834 - -2.1
3,516,835 + -0.5
3,516,963 - -2.2
3,516,973 + -0.5
3,516,973 + -0.0
3,516,974 - -1.2
3,516,974 - +0.8
3,516,974 - -0.8
3,516,987 + -1.3
3,516,988 - -1.0
3,516,988 - -0.4
3,517,104 + -1.3
3,517,109 + -0.6
3,517,142 - -0.2
3,517,210 + Xcc-8004.3632.1 0.30 -1.6
3,517,210 + Xcc-8004.3632.1 0.30 +1.8
3,517,210 + Xcc-8004.3632.1 0.30 +0.9
3,517,211 - Xcc-8004.3632.1 0.31 +0.4
3,517,211 - Xcc-8004.3632.1 0.31 -3.0
3,517,211 - Xcc-8004.3632.1 0.31 +0.7
3,517,238 - Xcc-8004.3632.1 0.45 +0.3
3,517,452 - +0.4
3,517,541 + Xcc-8004.3633.1 0.11 +0.3
3,517,541 + Xcc-8004.3633.1 0.11 +0.8
3,517,542 - Xcc-8004.3633.1 0.11 -1.8
3,517,542 - Xcc-8004.3633.1 0.11 -1.5
3,517,597 + Xcc-8004.3633.1 0.18 -0.8
3,517,597 + Xcc-8004.3633.1 0.18 -1.6
3,517,597 + Xcc-8004.3633.1 0.18 -1.0
3,517,597 + Xcc-8004.3633.1 0.18 +2.2
3,517,597 + Xcc-8004.3633.1 0.18 +0.7
3,517,598 - Xcc-8004.3633.1 0.18 +2.4
3,517,598 - Xcc-8004.3633.1 0.18 -1.4
3,517,598 - Xcc-8004.3633.1 0.18 -0.8
3,517,598 - Xcc-8004.3633.1 0.18 -1.2
3,517,598 - Xcc-8004.3633.1 0.18 -1.0
3,517,598 - Xcc-8004.3633.1 0.18 +1.9
3,517,598 - Xcc-8004.3633.1 0.18 -2.4
3,517,598 - Xcc-8004.3633.1 0.18 -2.7
3,517,598 - Xcc-8004.3633.1 0.18 -1.0
3,517,598 - Xcc-8004.3633.1 0.18 -1.3
3,517,717 + Xcc-8004.3633.1 0.31 -0.8
3,517,717 + Xcc-8004.3633.1 0.31 -2.1
3,517,717 + Xcc-8004.3633.1 0.31 -1.7
3,517,717 + Xcc-8004.3633.1 0.31 +1.4
3,517,718 - Xcc-8004.3633.1 0.31 -1.4

Or see this region's nucleotide sequence