Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3626.1 and Xcc-8004.3628.1 are separated by 138 nucleotides Xcc-8004.3628.1 and Xcc-8004.3629.1 are separated by 118 nucleotides
Xcc-8004.3626.1: Xcc-8004.3626.1 - putative; ORF located using Glimmer/Genemark, at 3,512,312 to 3,513,265
Xcc-8004.3626.1
Xcc-8004.3628.1: Xcc-8004.3628.1 - Alkylphosphonate utilization operon protein PhnA, at 3,513,404 to 3,513,739
Xcc-8004.3628.1
Xcc-8004.3629.1: Xcc-8004.3629.1 - Cation transport protein, at 3,513,858 to 3,514,820
Xcc-8004.3629.1
Position (kb) 3513
3514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3512.516 kb on + strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.605 kb on - strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.922 kb on - strand, within Xcc-8004.3626.1 at 3513.014 kb on + strand, within Xcc-8004.3626.1 at 3513.015 kb on - strand, within Xcc-8004.3626.1 at 3513.015 kb on - strand, within Xcc-8004.3626.1 at 3513.017 kb on + strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.252 kb on - strand at 3513.252 kb on - strand at 3513.252 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.393 kb on + strand at 3513.393 kb on + strand at 3513.393 kb on + strand at 3513.499 kb on + strand, within Xcc-8004.3628.1 at 3513.500 kb on - strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.750 kb on - strand at 3513.750 kb on - strand at 3513.866 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.895 kb on - strand at 3513.895 kb on - strand at 3513.895 kb on - strand at 3514.026 kb on + strand, within Xcc-8004.3629.1 at 3514.027 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.209 kb on + strand, within Xcc-8004.3629.1 at 3514.210 kb on - strand, within Xcc-8004.3629.1 at 3514.210 kb on - strand, within Xcc-8004.3629.1 at 3514.211 kb on + strand, within Xcc-8004.3629.1 at 3514.211 kb on + strand, within Xcc-8004.3629.1 at 3514.300 kb on - strand, within Xcc-8004.3629.1 at 3514.421 kb on + strand, within Xcc-8004.3629.1 at 3514.421 kb on + strand, within Xcc-8004.3629.1 at 3514.422 kb on - strand, within Xcc-8004.3629.1 at 3514.422 kb on - strand, within Xcc-8004.3629.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,512,516 + Xcc-8004.3626.1 0.21 -0.6 3,512,517 - Xcc-8004.3626.1 0.21 +0.8 3,512,517 - Xcc-8004.3626.1 0.21 -0.9 3,512,517 - Xcc-8004.3626.1 0.21 +0.8 3,512,604 + Xcc-8004.3626.1 0.31 +0.6 3,512,604 + Xcc-8004.3626.1 0.31 +0.6 3,512,604 + Xcc-8004.3626.1 0.31 -1.9 3,512,604 + Xcc-8004.3626.1 0.31 +1.5 3,512,605 - Xcc-8004.3626.1 0.31 +1.2 3,512,819 + Xcc-8004.3626.1 0.53 -1.6 3,512,819 + Xcc-8004.3626.1 0.53 -0.5 3,512,819 + Xcc-8004.3626.1 0.53 +0.3 3,512,820 - Xcc-8004.3626.1 0.53 -1.7 3,512,820 - Xcc-8004.3626.1 0.53 -0.2 3,512,820 - Xcc-8004.3626.1 0.53 -0.5 3,512,921 + Xcc-8004.3626.1 0.64 +0.9 3,512,921 + Xcc-8004.3626.1 0.64 -1.2 3,512,921 + Xcc-8004.3626.1 0.64 -0.4 3,512,921 + Xcc-8004.3626.1 0.64 -0.8 3,512,922 - Xcc-8004.3626.1 0.64 -1.8 3,513,014 + Xcc-8004.3626.1 0.74 +0.3 3,513,015 - Xcc-8004.3626.1 0.74 -2.4 3,513,015 - Xcc-8004.3626.1 0.74 +0.4 3,513,017 + Xcc-8004.3626.1 0.74 +0.6 3,513,018 - Xcc-8004.3626.1 0.74 -0.6 3,513,018 - Xcc-8004.3626.1 0.74 -0.8 3,513,018 - Xcc-8004.3626.1 0.74 -1.0 3,513,018 - Xcc-8004.3626.1 0.74 +1.0 3,513,018 - Xcc-8004.3626.1 0.74 -0.3 3,513,018 - Xcc-8004.3626.1 0.74 -1.9 3,513,252 - -0.1 3,513,252 - -1.1 3,513,252 - +2.0 3,513,290 - -1.3 3,513,290 - -2.2 3,513,290 - -0.8 3,513,290 - +1.0 3,513,290 - -0.7 3,513,363 + -0.1 3,513,363 + -1.8 3,513,363 + -0.7 3,513,363 + -2.2 3,513,363 + +2.5 3,513,393 + -1.0 3,513,393 + -0.5 3,513,393 + +0.6 3,513,499 + Xcc-8004.3628.1 0.28 +0.2 3,513,500 - Xcc-8004.3628.1 0.29 +0.8 3,513,693 + Xcc-8004.3628.1 0.86 -0.1 3,513,693 + Xcc-8004.3628.1 0.86 -0.3 3,513,693 + Xcc-8004.3628.1 0.86 +0.6 3,513,693 + Xcc-8004.3628.1 0.86 -0.2 3,513,693 + Xcc-8004.3628.1 0.86 -0.4 3,513,694 - Xcc-8004.3628.1 0.86 +0.6 3,513,694 - Xcc-8004.3628.1 0.86 +0.4 3,513,694 - Xcc-8004.3628.1 0.86 -2.3 3,513,694 - Xcc-8004.3628.1 0.86 -0.3 3,513,694 - Xcc-8004.3628.1 0.86 +0.4 3,513,694 - Xcc-8004.3628.1 0.86 +1.5 3,513,750 - +2.5 3,513,750 - +0.9 3,513,866 + +1.7 3,513,894 + +0.3 3,513,894 + -2.2 3,513,894 + +0.6 3,513,894 + -1.2 3,513,894 + -0.7 3,513,894 + +0.3 3,513,894 + -1.8 3,513,895 - +1.1 3,513,895 - +1.1 3,513,895 - -0.4 3,514,026 + Xcc-8004.3629.1 0.17 -0.3 3,514,027 - Xcc-8004.3629.1 0.18 +0.7 3,514,093 - Xcc-8004.3629.1 0.24 +1.5 3,514,093 - Xcc-8004.3629.1 0.24 -1.1 3,514,093 - Xcc-8004.3629.1 0.24 -0.6 3,514,093 - Xcc-8004.3629.1 0.24 +0.2 3,514,209 + Xcc-8004.3629.1 0.36 -0.4 3,514,210 - Xcc-8004.3629.1 0.37 -1.4 3,514,210 - Xcc-8004.3629.1 0.37 -2.6 3,514,211 + Xcc-8004.3629.1 0.37 -3.4 3,514,211 + Xcc-8004.3629.1 0.37 -0.8 3,514,300 - Xcc-8004.3629.1 0.46 -0.9 3,514,421 + Xcc-8004.3629.1 0.58 -0.1 3,514,421 + Xcc-8004.3629.1 0.58 -2.2 3,514,422 - Xcc-8004.3629.1 0.59 +0.9 3,514,422 - Xcc-8004.3629.1 0.59 -0.4
Or see this region's nucleotide sequence