Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3603.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3602.1 and Xcc-8004.3603.1 are separated by 308 nucleotidesXcc-8004.3603.1 and Xcc-8004.3604.1 overlap by 4 nucleotides Xcc-8004.3602.1: Xcc-8004.3602.1 - FIG111991: hypothetical protein, at 3,491,112 to 3,491,939 Xcc-8004.3602.1 Xcc-8004.3603.1: Xcc-8004.3603.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 3,492,248 to 3,493,297 Xcc-8004.3603.1 Xcc-8004.3604.1: Xcc-8004.3604.1 - COG2907: Amine oxidase, flavin-containing, at 3,493,294 to 3,494,544 Xcc-8004.3604.1 Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3491.354 kb on + strand, within Xcc-8004.3602.1at 3491.355 kb on - strand, within Xcc-8004.3602.1at 3491.355 kb on - strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3492.203 kb on + strandat 3492.203 kb on + strandat 3492.203 kb on + strandat 3492.204 kb on - strandat 3492.264 kb on + strandat 3492.264 kb on + strandat 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.911 kb on + strand, within Xcc-8004.3603.1at 3493.188 kb on - strand, within Xcc-8004.3603.1at 3493.203 kb on - strandat 3493.399 kb on + strandat 3493.451 kb on - strand, within Xcc-8004.3604.1at 3493.492 kb on + strand, within Xcc-8004.3604.1at 3493.492 kb on + strand, within Xcc-8004.3604.1at 3493.493 kb on - strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.700 kb on + strand, within Xcc-8004.3604.1at 3493.738 kb on + strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.756 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.270 kb on - strand, within Xcc-8004.3604.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,491,354 + Xcc-8004.3602.1 0.29 +1.4
3,491,355 - Xcc-8004.3602.1 0.29 +0.4
3,491,355 - Xcc-8004.3602.1 0.29 +2.0
3,491,637 + Xcc-8004.3602.1 0.63 +3.1
3,491,637 + Xcc-8004.3602.1 0.63 +2.1
3,491,637 + Xcc-8004.3602.1 0.63 +1.0
3,491,638 - Xcc-8004.3602.1 0.64 -2.0
3,491,638 - Xcc-8004.3602.1 0.64 +2.8
3,491,638 - Xcc-8004.3602.1 0.64 +0.8
3,491,638 - Xcc-8004.3602.1 0.64 -1.9
3,491,638 - Xcc-8004.3602.1 0.64 -0.7
3,491,638 - Xcc-8004.3602.1 0.64 +0.5
3,491,638 - Xcc-8004.3602.1 0.64 -2.9
3,492,203 + +0.6
3,492,203 + +0.1
3,492,203 + +1.3
3,492,204 - +0.3
3,492,264 + -1.5
3,492,264 + -2.3
3,492,555 - Xcc-8004.3603.1 0.29 +1.7
3,492,555 - Xcc-8004.3603.1 0.29 -1.9
3,492,555 - Xcc-8004.3603.1 0.29 -0.2
3,492,587 + Xcc-8004.3603.1 0.32 -1.6
3,492,587 + Xcc-8004.3603.1 0.32 -0.1
3,492,588 - Xcc-8004.3603.1 0.32 +0.9
3,492,588 - Xcc-8004.3603.1 0.32 -0.4
3,492,588 - Xcc-8004.3603.1 0.32 +1.1
3,492,588 - Xcc-8004.3603.1 0.32 -1.8
3,492,588 - Xcc-8004.3603.1 0.32 +1.6
3,492,588 - Xcc-8004.3603.1 0.32 +2.7
3,492,588 - Xcc-8004.3603.1 0.32 -1.7
3,492,588 - Xcc-8004.3603.1 0.32 +0.7
3,492,596 + Xcc-8004.3603.1 0.33 -1.0
3,492,596 + Xcc-8004.3603.1 0.33 -0.9
3,492,596 + Xcc-8004.3603.1 0.33 +0.7
3,492,597 - Xcc-8004.3603.1 0.33 +1.3
3,492,597 - Xcc-8004.3603.1 0.33 +0.5
3,492,911 + Xcc-8004.3603.1 0.63 -3.1
3,493,188 - Xcc-8004.3603.1 0.90 +0.1
3,493,203 - -1.4
3,493,399 + +1.1
3,493,451 - Xcc-8004.3604.1 0.13 +2.5
3,493,492 + Xcc-8004.3604.1 0.16 +0.8
3,493,492 + Xcc-8004.3604.1 0.16 -2.1
3,493,493 - Xcc-8004.3604.1 0.16 +1.7
3,493,588 + Xcc-8004.3604.1 0.24 +0.2
3,493,588 + Xcc-8004.3604.1 0.24 +1.8
3,493,588 + Xcc-8004.3604.1 0.24 +1.2
3,493,588 + Xcc-8004.3604.1 0.24 -1.9
3,493,588 + Xcc-8004.3604.1 0.24 -0.9
3,493,588 + Xcc-8004.3604.1 0.24 +2.4
3,493,588 + Xcc-8004.3604.1 0.24 -2.8
3,493,700 + Xcc-8004.3604.1 0.32 +0.7
3,493,738 + Xcc-8004.3604.1 0.35 +0.1
3,493,739 - Xcc-8004.3604.1 0.36 +2.1
3,493,739 - Xcc-8004.3604.1 0.36 +0.8
3,493,756 + Xcc-8004.3604.1 0.37 +0.1
3,493,936 + Xcc-8004.3604.1 0.51 -0.2
3,493,936 + Xcc-8004.3604.1 0.51 -1.4
3,493,936 + Xcc-8004.3604.1 0.51 -2.2
3,493,936 + Xcc-8004.3604.1 0.51 -0.5
3,493,936 + Xcc-8004.3604.1 0.51 +0.6
3,493,937 - Xcc-8004.3604.1 0.51 -1.6
3,493,937 - Xcc-8004.3604.1 0.51 +1.7
3,493,937 - Xcc-8004.3604.1 0.51 -1.4
3,493,937 - Xcc-8004.3604.1 0.51 +0.7
3,493,937 - Xcc-8004.3604.1 0.51 -2.1
3,493,937 - Xcc-8004.3604.1 0.51 -1.0
3,493,937 - Xcc-8004.3604.1 0.51 +1.6
3,494,066 + Xcc-8004.3604.1 0.62 +0.0
3,494,066 + Xcc-8004.3604.1 0.62 -0.9
3,494,149 + Xcc-8004.3604.1 0.68 +0.1
3,494,149 + Xcc-8004.3604.1 0.68 +2.1
3,494,149 + Xcc-8004.3604.1 0.68 -0.2
3,494,150 - Xcc-8004.3604.1 0.68 -1.9
3,494,150 - Xcc-8004.3604.1 0.68 +1.9
3,494,269 + Xcc-8004.3604.1 0.78 +1.7
3,494,269 + Xcc-8004.3604.1 0.78 +0.5
3,494,270 - Xcc-8004.3604.1 0.78 +0.6

Or see this region's nucleotide sequence