Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3582.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3581.1 and Xcc-8004.3582.1 are separated by 200 nucleotidesXcc-8004.3582.1 and Xcc-8004.3583.1 overlap by 10 nucleotides Xcc-8004.3581.1: Xcc-8004.3581.1 - FIG01211259: hypothetical protein, at 3,471,207 to 3,472,724 Xcc-8004.3581.1 Xcc-8004.3582.1: Xcc-8004.3582.1 - putative; ORF located using Glimmer/Genemark, at 3,472,925 to 3,473,158 Xcc-8004.3582.1 Xcc-8004.3583.1: Xcc-8004.3583.1 - FIG01210681: hypothetical protein, at 3,473,149 to 3,474,288 Xcc-8004.3583.1 Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3472.050 kb on + strand, within Xcc-8004.3581.1at 3472.051 kb on - strand, within Xcc-8004.3581.1at 3472.051 kb on - strand, within Xcc-8004.3581.1at 3472.051 kb on - strand, within Xcc-8004.3581.1at 3472.051 kb on - strand, within Xcc-8004.3581.1at 3472.068 kb on + strand, within Xcc-8004.3581.1at 3472.128 kb on + strand, within Xcc-8004.3581.1at 3472.128 kb on + strand, within Xcc-8004.3581.1at 3472.128 kb on + strand, within Xcc-8004.3581.1at 3472.128 kb on + strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.129 kb on - strand, within Xcc-8004.3581.1at 3472.131 kb on + strand, within Xcc-8004.3581.1at 3472.131 kb on + strand, within Xcc-8004.3581.1at 3472.132 kb on - strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.227 kb on + strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.228 kb on - strand, within Xcc-8004.3581.1at 3472.296 kb on - strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.377 kb on + strand, within Xcc-8004.3581.1at 3472.378 kb on - strand, within Xcc-8004.3581.1at 3472.378 kb on - strand, within Xcc-8004.3581.1at 3472.378 kb on - strand, within Xcc-8004.3581.1at 3472.378 kb on - strand, within Xcc-8004.3581.1at 3472.515 kb on + strand, within Xcc-8004.3581.1at 3472.515 kb on + strand, within Xcc-8004.3581.1at 3472.515 kb on + strand, within Xcc-8004.3581.1at 3472.516 kb on - strand, within Xcc-8004.3581.1at 3472.516 kb on - strand, within Xcc-8004.3581.1at 3472.516 kb on - strand, within Xcc-8004.3581.1at 3472.537 kb on - strand, within Xcc-8004.3581.1at 3472.677 kb on + strandat 3472.722 kb on + strandat 3472.723 kb on - strandat 3472.891 kb on + strandat 3472.996 kb on + strand, within Xcc-8004.3582.1at 3472.997 kb on - strand, within Xcc-8004.3582.1at 3473.130 kb on - strand, within Xcc-8004.3582.1at 3473.191 kb on - strandat 3473.208 kb on - strandat 3473.348 kb on + strand, within Xcc-8004.3583.1at 3473.348 kb on + strand, within Xcc-8004.3583.1at 3473.349 kb on - strand, within Xcc-8004.3583.1at 3473.349 kb on - strand, within Xcc-8004.3583.1at 3473.409 kb on - strand, within Xcc-8004.3583.1at 3473.409 kb on - strand, within Xcc-8004.3583.1at 3473.453 kb on + strand, within Xcc-8004.3583.1at 3473.453 kb on + strand, within Xcc-8004.3583.1at 3473.453 kb on + strand, within Xcc-8004.3583.1at 3473.454 kb on - strand, within Xcc-8004.3583.1at 3473.454 kb on - strand, within Xcc-8004.3583.1at 3473.454 kb on - strand, within Xcc-8004.3583.1at 3473.455 kb on + strand, within Xcc-8004.3583.1at 3473.455 kb on + strand, within Xcc-8004.3583.1at 3473.455 kb on + strand, within Xcc-8004.3583.1at 3473.456 kb on - strand, within Xcc-8004.3583.1at 3473.456 kb on - strand, within Xcc-8004.3583.1at 3473.456 kb on - strand, within Xcc-8004.3583.1at 3473.456 kb on - strand, within Xcc-8004.3583.1at 3473.612 kb on - strand, within Xcc-8004.3583.1at 3473.819 kb on + strand, within Xcc-8004.3583.1at 3473.819 kb on + strand, within Xcc-8004.3583.1at 3473.819 kb on + strand, within Xcc-8004.3583.1at 3473.819 kb on + strand, within Xcc-8004.3583.1at 3473.820 kb on - strand, within Xcc-8004.3583.1at 3473.820 kb on - strand, within Xcc-8004.3583.1at 3473.885 kb on + strand, within Xcc-8004.3583.1at 3473.885 kb on + strand, within Xcc-8004.3583.1at 3473.885 kb on + strand, within Xcc-8004.3583.1at 3473.885 kb on + strand, within Xcc-8004.3583.1at 3474.083 kb on + strand, within Xcc-8004.3583.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,472,050 + Xcc-8004.3581.1 0.56 -0.8
3,472,051 - Xcc-8004.3581.1 0.56 +1.5
3,472,051 - Xcc-8004.3581.1 0.56 +3.1
3,472,051 - Xcc-8004.3581.1 0.56 -0.7
3,472,051 - Xcc-8004.3581.1 0.56 +0.5
3,472,068 + Xcc-8004.3581.1 0.57 +0.9
3,472,128 + Xcc-8004.3581.1 0.61 +0.1
3,472,128 + Xcc-8004.3581.1 0.61 -2.0
3,472,128 + Xcc-8004.3581.1 0.61 +0.5
3,472,128 + Xcc-8004.3581.1 0.61 +1.8
3,472,129 - Xcc-8004.3581.1 0.61 -1.1
3,472,129 - Xcc-8004.3581.1 0.61 -1.5
3,472,129 - Xcc-8004.3581.1 0.61 +1.7
3,472,129 - Xcc-8004.3581.1 0.61 +0.7
3,472,129 - Xcc-8004.3581.1 0.61 -1.2
3,472,129 - Xcc-8004.3581.1 0.61 -0.6
3,472,129 - Xcc-8004.3581.1 0.61 -1.0
3,472,131 + Xcc-8004.3581.1 0.61 -2.5
3,472,131 + Xcc-8004.3581.1 0.61 +0.8
3,472,132 - Xcc-8004.3581.1 0.61 +0.7
3,472,227 + Xcc-8004.3581.1 0.67 +0.2
3,472,227 + Xcc-8004.3581.1 0.67 +0.4
3,472,227 + Xcc-8004.3581.1 0.67 -0.7
3,472,227 + Xcc-8004.3581.1 0.67 -1.3
3,472,227 + Xcc-8004.3581.1 0.67 -0.1
3,472,227 + Xcc-8004.3581.1 0.67 +1.1
3,472,228 - Xcc-8004.3581.1 0.67 +0.4
3,472,228 - Xcc-8004.3581.1 0.67 -0.8
3,472,228 - Xcc-8004.3581.1 0.67 -0.7
3,472,228 - Xcc-8004.3581.1 0.67 -1.0
3,472,228 - Xcc-8004.3581.1 0.67 -1.5
3,472,228 - Xcc-8004.3581.1 0.67 +1.5
3,472,228 - Xcc-8004.3581.1 0.67 -2.1
3,472,296 - Xcc-8004.3581.1 0.72 -0.6
3,472,377 + Xcc-8004.3581.1 0.77 +0.5
3,472,377 + Xcc-8004.3581.1 0.77 +2.1
3,472,377 + Xcc-8004.3581.1 0.77 +2.0
3,472,377 + Xcc-8004.3581.1 0.77 -0.2
3,472,377 + Xcc-8004.3581.1 0.77 -0.5
3,472,377 + Xcc-8004.3581.1 0.77 -0.5
3,472,377 + Xcc-8004.3581.1 0.77 +0.7
3,472,377 + Xcc-8004.3581.1 0.77 -2.0
3,472,378 - Xcc-8004.3581.1 0.77 +0.2
3,472,378 - Xcc-8004.3581.1 0.77 -0.5
3,472,378 - Xcc-8004.3581.1 0.77 +0.6
3,472,378 - Xcc-8004.3581.1 0.77 +0.3
3,472,515 + Xcc-8004.3581.1 0.86 -1.4
3,472,515 + Xcc-8004.3581.1 0.86 -1.6
3,472,515 + Xcc-8004.3581.1 0.86 +0.9
3,472,516 - Xcc-8004.3581.1 0.86 +0.1
3,472,516 - Xcc-8004.3581.1 0.86 -1.1
3,472,516 - Xcc-8004.3581.1 0.86 +0.1
3,472,537 - Xcc-8004.3581.1 0.88 +1.7
3,472,677 + -1.0
3,472,722 + -0.7
3,472,723 - -0.7
3,472,891 + +0.1
3,472,996 + Xcc-8004.3582.1 0.30 -1.8
3,472,997 - Xcc-8004.3582.1 0.31 -1.2
3,473,130 - Xcc-8004.3582.1 0.88 -1.2
3,473,191 - -1.7
3,473,208 - +0.2
3,473,348 + Xcc-8004.3583.1 0.17 +2.1
3,473,348 + Xcc-8004.3583.1 0.17 -2.3
3,473,349 - Xcc-8004.3583.1 0.18 +1.1
3,473,349 - Xcc-8004.3583.1 0.18 +1.9
3,473,409 - Xcc-8004.3583.1 0.23 +1.6
3,473,409 - Xcc-8004.3583.1 0.23 +0.6
3,473,453 + Xcc-8004.3583.1 0.27 +1.6
3,473,453 + Xcc-8004.3583.1 0.27 -1.4
3,473,453 + Xcc-8004.3583.1 0.27 -0.6
3,473,454 - Xcc-8004.3583.1 0.27 +0.3
3,473,454 - Xcc-8004.3583.1 0.27 -2.9
3,473,454 - Xcc-8004.3583.1 0.27 +0.1
3,473,455 + Xcc-8004.3583.1 0.27 +1.1
3,473,455 + Xcc-8004.3583.1 0.27 +0.4
3,473,455 + Xcc-8004.3583.1 0.27 -0.4
3,473,456 - Xcc-8004.3583.1 0.27 +1.3
3,473,456 - Xcc-8004.3583.1 0.27 +0.0
3,473,456 - Xcc-8004.3583.1 0.27 -1.8
3,473,456 - Xcc-8004.3583.1 0.27 +0.2
3,473,612 - Xcc-8004.3583.1 0.41 +1.0
3,473,819 + Xcc-8004.3583.1 0.59 -1.7
3,473,819 + Xcc-8004.3583.1 0.59 +1.8
3,473,819 + Xcc-8004.3583.1 0.59 +1.6
3,473,819 + Xcc-8004.3583.1 0.59 -2.3
3,473,820 - Xcc-8004.3583.1 0.59 -1.1
3,473,820 - Xcc-8004.3583.1 0.59 -0.2
3,473,885 + Xcc-8004.3583.1 0.65 +1.2
3,473,885 + Xcc-8004.3583.1 0.65 +0.8
3,473,885 + Xcc-8004.3583.1 0.65 -1.0
3,473,885 + Xcc-8004.3583.1 0.65 -0.1
3,474,083 + Xcc-8004.3583.1 0.82 -1.8

Or see this region's nucleotide sequence