Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3090.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3089.1 and Xcc-8004.3090.1 overlap by 1 nucleotidesXcc-8004.3090.1 and Xcc-8004.3091.1 are separated by 51 nucleotidesXcc-8004.3091.1 and Xcc-8004.3092.1 overlap by 10 nucleotides Xcc-8004.3089.1: Xcc-8004.3089.1 - Predicted ATPase related to phosphate starvation-inducible protein PhoH, at 3,024,616 to 3,026,013 Xcc-8004.3089.1 Xcc-8004.3090.1: Xcc-8004.3090.1 - FIG01210237: hypothetical protein, at 3,026,013 to 3,026,492 Xcc-8004.3090.1 Xcc-8004.3091.1: Xcc-8004.3091.1 - hypothetical protein, at 3,026,544 to 3,027,374 Xcc-8004.3091.1 Xcc-8004.3092.1: Xcc-8004.3092.1 - FIG01213027: hypothetical protein, at 3,027,365 to 3,028,216 Xcc-8004.3092.1 Position (kb) 3026 3027Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.057 kb on + strand, within Xcc-8004.3089.1at 3025.058 kb on - strand, within Xcc-8004.3089.1at 3025.058 kb on - strand, within Xcc-8004.3089.1at 3025.058 kb on - strand, within Xcc-8004.3089.1at 3025.058 kb on - strand, within Xcc-8004.3089.1at 3025.084 kb on + strand, within Xcc-8004.3089.1at 3025.085 kb on - strand, within Xcc-8004.3089.1at 3025.211 kb on - strand, within Xcc-8004.3089.1at 3025.244 kb on - strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.255 kb on + strand, within Xcc-8004.3089.1at 3025.256 kb on - strand, within Xcc-8004.3089.1at 3025.256 kb on - strand, within Xcc-8004.3089.1at 3025.261 kb on + strand, within Xcc-8004.3089.1at 3025.261 kb on + strand, within Xcc-8004.3089.1at 3025.261 kb on + strand, within Xcc-8004.3089.1at 3025.262 kb on - strand, within Xcc-8004.3089.1at 3025.262 kb on - strand, within Xcc-8004.3089.1at 3025.262 kb on - strand, within Xcc-8004.3089.1at 3025.262 kb on - strand, within Xcc-8004.3089.1at 3025.262 kb on - strand, within Xcc-8004.3089.1at 3025.762 kb on + strand, within Xcc-8004.3089.1at 3025.882 kb on + strandat 3025.882 kb on + strandat 3025.883 kb on - strandat 3025.912 kb on + strandat 3025.912 kb on + strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3026.209 kb on - strand, within Xcc-8004.3090.1at 3026.209 kb on - strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.440 kb on - strand, within Xcc-8004.3090.1at 3026.681 kb on + strand, within Xcc-8004.3091.1at 3026.682 kb on - strand, within Xcc-8004.3091.1at 3027.001 kb on + strand, within Xcc-8004.3091.1at 3027.001 kb on + strand, within Xcc-8004.3091.1at 3027.002 kb on - strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.431 kb on + strandat 3027.432 kb on - strandat 3027.469 kb on - strand, within Xcc-8004.3092.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,025,057 + Xcc-8004.3089.1 0.32 +0.4
3,025,057 + Xcc-8004.3089.1 0.32 +2.3
3,025,057 + Xcc-8004.3089.1 0.32 -0.4
3,025,057 + Xcc-8004.3089.1 0.32 -0.5
3,025,057 + Xcc-8004.3089.1 0.32 +1.6
3,025,057 + Xcc-8004.3089.1 0.32 -0.1
3,025,057 + Xcc-8004.3089.1 0.32 -0.4
3,025,057 + Xcc-8004.3089.1 0.32 -1.2
3,025,057 + Xcc-8004.3089.1 0.32 +2.5
3,025,058 - Xcc-8004.3089.1 0.32 -0.6
3,025,058 - Xcc-8004.3089.1 0.32 -1.9
3,025,058 - Xcc-8004.3089.1 0.32 -3.4
3,025,058 - Xcc-8004.3089.1 0.32 +0.1
3,025,084 + Xcc-8004.3089.1 0.33 +2.1
3,025,085 - Xcc-8004.3089.1 0.34 -2.0
3,025,211 - Xcc-8004.3089.1 0.43 +0.5
3,025,244 - Xcc-8004.3089.1 0.45 -2.3
3,025,255 + Xcc-8004.3089.1 0.46 -1.8
3,025,255 + Xcc-8004.3089.1 0.46 +0.8
3,025,255 + Xcc-8004.3089.1 0.46 -0.7
3,025,255 + Xcc-8004.3089.1 0.46 +3.3
3,025,255 + Xcc-8004.3089.1 0.46 -1.2
3,025,255 + Xcc-8004.3089.1 0.46 -1.5
3,025,255 + Xcc-8004.3089.1 0.46 -0.1
3,025,256 - Xcc-8004.3089.1 0.46 -0.5
3,025,256 - Xcc-8004.3089.1 0.46 +2.1
3,025,261 + Xcc-8004.3089.1 0.46 -1.2
3,025,261 + Xcc-8004.3089.1 0.46 -2.2
3,025,261 + Xcc-8004.3089.1 0.46 -0.6
3,025,262 - Xcc-8004.3089.1 0.46 -0.6
3,025,262 - Xcc-8004.3089.1 0.46 -2.7
3,025,262 - Xcc-8004.3089.1 0.46 -1.1
3,025,262 - Xcc-8004.3089.1 0.46 -0.2
3,025,262 - Xcc-8004.3089.1 0.46 -0.0
3,025,762 + Xcc-8004.3089.1 0.82 -0.7
3,025,882 + -1.1
3,025,882 + +0.8
3,025,883 - +0.8
3,025,912 + +1.5
3,025,912 + -1.2
3,025,913 - +2.6
3,025,913 - +0.3
3,025,913 - +0.1
3,025,913 - -1.2
3,025,913 - +1.2
3,025,913 - -0.5
3,026,209 - Xcc-8004.3090.1 0.41 -3.1
3,026,209 - Xcc-8004.3090.1 0.41 +1.1
3,026,304 + Xcc-8004.3090.1 0.61 +0.5
3,026,304 + Xcc-8004.3090.1 0.61 -0.0
3,026,304 + Xcc-8004.3090.1 0.61 +0.1
3,026,304 + Xcc-8004.3090.1 0.61 +1.0
3,026,304 + Xcc-8004.3090.1 0.61 +0.1
3,026,304 + Xcc-8004.3090.1 0.61 -0.3
3,026,304 + Xcc-8004.3090.1 0.61 +1.6
3,026,304 + Xcc-8004.3090.1 0.61 +2.1
3,026,305 - Xcc-8004.3090.1 0.61 -1.6
3,026,305 - Xcc-8004.3090.1 0.61 +1.6
3,026,305 - Xcc-8004.3090.1 0.61 -0.9
3,026,305 - Xcc-8004.3090.1 0.61 -2.2
3,026,340 + Xcc-8004.3090.1 0.68 +2.0
3,026,340 + Xcc-8004.3090.1 0.68 +0.2
3,026,340 + Xcc-8004.3090.1 0.68 -1.2
3,026,340 + Xcc-8004.3090.1 0.68 -1.4
3,026,340 + Xcc-8004.3090.1 0.68 -0.1
3,026,340 + Xcc-8004.3090.1 0.68 -0.2
3,026,341 - Xcc-8004.3090.1 0.68 -0.7
3,026,341 - Xcc-8004.3090.1 0.68 +0.3
3,026,341 - Xcc-8004.3090.1 0.68 +1.8
3,026,341 - Xcc-8004.3090.1 0.68 -3.0
3,026,439 + Xcc-8004.3090.1 0.89 -1.8
3,026,439 + Xcc-8004.3090.1 0.89 -0.2
3,026,439 + Xcc-8004.3090.1 0.89 -1.3
3,026,439 + Xcc-8004.3090.1 0.89 +0.9
3,026,440 - Xcc-8004.3090.1 0.89 +1.4
3,026,681 + Xcc-8004.3091.1 0.16 -0.9
3,026,682 - Xcc-8004.3091.1 0.17 -1.6
3,027,001 + Xcc-8004.3091.1 0.55 +1.2
3,027,001 + Xcc-8004.3091.1 0.55 -2.3
3,027,002 - Xcc-8004.3091.1 0.55 -0.4
3,027,279 + Xcc-8004.3091.1 0.88 -2.4
3,027,279 + Xcc-8004.3091.1 0.88 -1.0
3,027,279 + Xcc-8004.3091.1 0.88 -2.2
3,027,279 + Xcc-8004.3091.1 0.88 +0.5
3,027,280 - Xcc-8004.3091.1 0.89 -1.6
3,027,280 - Xcc-8004.3091.1 0.89 -1.6
3,027,280 - Xcc-8004.3091.1 0.89 -2.4
3,027,280 - Xcc-8004.3091.1 0.89 -0.6
3,027,280 - Xcc-8004.3091.1 0.89 -1.5
3,027,280 - Xcc-8004.3091.1 0.89 +1.9
3,027,431 + -1.4
3,027,432 - -0.6
3,027,469 - Xcc-8004.3092.1 0.12 -2.5

Or see this region's nucleotide sequence