Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2946.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2944.1 and Xcc-8004.2945.1 overlap by 4 nucleotidesXcc-8004.2945.1 and Xcc-8004.2946.1 overlap by 4 nucleotidesXcc-8004.2946.1 and Xcc-8004.2947.1 overlap by 4 nucleotides Xcc-8004.2944.1: Xcc-8004.2944.1 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 2,867,989 to 2,868,723 Xcc-8004.2944.1 Xcc-8004.2945.1: Xcc-8004.2945.1 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 2,868,720 to 2,869,322 Xcc-8004.2945.1 Xcc-8004.2946.1: Xcc-8004.2946.1 - Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 2,869,319 to 2,870,446 Xcc-8004.2946.1 Xcc-8004.2947.1: Xcc-8004.2947.1 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 2,870,443 to 2,871,531 Xcc-8004.2947.1 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2868.418 kb on + strand, within Xcc-8004.2944.1at 2868.419 kb on - strand, within Xcc-8004.2944.1at 2868.510 kb on + strand, within Xcc-8004.2944.1at 2868.539 kb on + strand, within Xcc-8004.2944.1at 2868.653 kb on + strandat 2868.707 kb on + strandat 2868.887 kb on - strand, within Xcc-8004.2945.1at 2868.901 kb on + strand, within Xcc-8004.2945.1at 2868.902 kb on - strand, within Xcc-8004.2945.1at 2869.322 kb on + strandat 2869.322 kb on + strandat 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.613 kb on - strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1at 2869.918 kb on + strand, within Xcc-8004.2946.1at 2870.642 kb on + strand, within Xcc-8004.2947.1at 2870.642 kb on + strand, within Xcc-8004.2947.1at 2870.642 kb on + strand, within Xcc-8004.2947.1at 2870.912 kb on + strand, within Xcc-8004.2947.1at 2870.960 kb on + strand, within Xcc-8004.2947.1at 2870.960 kb on + strand, within Xcc-8004.2947.1at 2870.960 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.197 kb on + strand, within Xcc-8004.2947.1at 2871.198 kb on - strand, within Xcc-8004.2947.1at 2871.198 kb on - strand, within Xcc-8004.2947.1at 2871.198 kb on - strand, within Xcc-8004.2947.1at 2871.198 kb on - strand, within Xcc-8004.2947.1at 2871.198 kb on - strand, within Xcc-8004.2947.1at 2871.323 kb on + strand, within Xcc-8004.2947.1at 2871.323 kb on + strand, within Xcc-8004.2947.1at 2871.371 kb on + strand, within Xcc-8004.2947.1at 2871.371 kb on + strand, within Xcc-8004.2947.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
remove
2,868,418 + Xcc-8004.2944.1 0.58 -3.3
2,868,419 - Xcc-8004.2944.1 0.59 -1.0
2,868,510 + Xcc-8004.2944.1 0.71 -3.2
2,868,539 + Xcc-8004.2944.1 0.75 +0.0
2,868,653 + -2.2
2,868,707 + -2.6
2,868,887 - Xcc-8004.2945.1 0.28 -0.8
2,868,901 + Xcc-8004.2945.1 0.30 -0.3
2,868,902 - Xcc-8004.2945.1 0.30 -2.5
2,869,322 + -2.9
2,869,322 + -1.5
2,869,554 + Xcc-8004.2946.1 0.21 -2.3
2,869,554 + Xcc-8004.2946.1 0.21 -2.3
2,869,554 + Xcc-8004.2946.1 0.21 -2.1
2,869,554 + Xcc-8004.2946.1 0.21 -1.4
2,869,613 - Xcc-8004.2946.1 0.26 -1.4
2,869,674 + Xcc-8004.2946.1 0.31 -1.0
2,869,674 + Xcc-8004.2946.1 0.31 -1.2
2,869,674 + Xcc-8004.2946.1 0.31 -2.3
2,869,918 + Xcc-8004.2946.1 0.53 -3.8
2,870,642 + Xcc-8004.2947.1 0.18 -1.0
2,870,642 + Xcc-8004.2947.1 0.18 +2.0
2,870,642 + Xcc-8004.2947.1 0.18 -2.3
2,870,912 + Xcc-8004.2947.1 0.43 -1.0
2,870,960 + Xcc-8004.2947.1 0.47 -0.1
2,870,960 + Xcc-8004.2947.1 0.47 -2.2
2,870,960 + Xcc-8004.2947.1 0.47 -3.2
2,871,197 + Xcc-8004.2947.1 0.69 -1.3
2,871,197 + Xcc-8004.2947.1 0.69 -3.5
2,871,197 + Xcc-8004.2947.1 0.69 +0.0
2,871,197 + Xcc-8004.2947.1 0.69 -4.1
2,871,197 + Xcc-8004.2947.1 0.69 -1.0
2,871,197 + Xcc-8004.2947.1 0.69 -1.1
2,871,198 - Xcc-8004.2947.1 0.69 -1.1
2,871,198 - Xcc-8004.2947.1 0.69 -3.2
2,871,198 - Xcc-8004.2947.1 0.69 +0.0
2,871,198 - Xcc-8004.2947.1 0.69 -1.1
2,871,198 - Xcc-8004.2947.1 0.69 -3.5
2,871,323 + Xcc-8004.2947.1 0.81 -1.3
2,871,323 + Xcc-8004.2947.1 0.81 -3.3
2,871,371 + Xcc-8004.2947.1 0.85 -0.5
2,871,371 + Xcc-8004.2947.1 0.85 -3.4

Or see this region's nucleotide sequence