Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2942.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2941.1 and Xcc-8004.2942.1 are separated by 643 nucleotidesXcc-8004.2942.1 and Xcc-8004.2943.1 overlap by 11 nucleotidesXcc-8004.2943.1 and Xcc-8004.2944.1 overlap by 7 nucleotides Xcc-8004.2941.1: Xcc-8004.2941.1 - FIG01211701: hypothetical protein, at 2,864,379 to 2,865,965 Xcc-8004.2941.1 Xcc-8004.2942.1: Xcc-8004.2942.1 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 2,866,609 to 2,867,229 Xcc-8004.2942.1 Xcc-8004.2943.1: Xcc-8004.2943.1 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 2,867,219 to 2,867,995 Xcc-8004.2943.1 Xcc-8004.2944.1: Xcc-8004.2944.1 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 2,867,989 to 2,868,723 Xcc-8004.2944.1 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2865.640 kb on + strand, within Xcc-8004.2941.1at 2865.640 kb on + strand, within Xcc-8004.2941.1at 2865.640 kb on + strand, within Xcc-8004.2941.1at 2865.641 kb on - strand, within Xcc-8004.2941.1at 2865.670 kb on + strand, within Xcc-8004.2941.1at 2865.671 kb on - strand, within Xcc-8004.2941.1at 2865.773 kb on - strand, within Xcc-8004.2941.1at 2865.990 kb on + strandat 2865.991 kb on - strandat 2865.991 kb on - strandat 2865.996 kb on + strandat 2865.997 kb on - strandat 2865.997 kb on - strandat 2866.033 kb on + strandat 2866.033 kb on + strandat 2866.090 kb on + strandat 2866.091 kb on - strandat 2866.091 kb on - strandat 2866.154 kb on - strandat 2866.154 kb on - strandat 2866.165 kb on + strandat 2866.165 kb on + strandat 2866.166 kb on - strandat 2866.169 kb on + strandat 2866.169 kb on + strandat 2866.305 kb on - strandat 2866.309 kb on - strandat 2866.382 kb on + strandat 2866.382 kb on + strandat 2866.383 kb on - strandat 2866.383 kb on - strandat 2866.498 kb on - strandat 2866.610 kb on + strandat 2866.611 kb on - strandat 2866.611 kb on - strandat 2866.611 kb on - strandat 2866.611 kb on - strandat 2866.688 kb on + strand, within Xcc-8004.2942.1at 2866.688 kb on + strand, within Xcc-8004.2942.1at 2866.689 kb on - strand, within Xcc-8004.2942.1at 2866.736 kb on - strand, within Xcc-8004.2942.1at 2866.736 kb on - strand, within Xcc-8004.2942.1at 2866.736 kb on - strand, within Xcc-8004.2942.1at 2866.820 kb on + strand, within Xcc-8004.2942.1at 2866.821 kb on - strand, within Xcc-8004.2942.1at 2866.821 kb on - strand, within Xcc-8004.2942.1at 2866.821 kb on - strand, within Xcc-8004.2942.1at 2867.109 kb on - strand, within Xcc-8004.2942.1at 2867.234 kb on + strandat 2867.235 kb on - strandat 2867.235 kb on - strandat 2867.431 kb on + strand, within Xcc-8004.2943.1at 2867.436 kb on + strand, within Xcc-8004.2943.1at 2867.437 kb on - strand, within Xcc-8004.2943.1at 2867.738 kb on + strand, within Xcc-8004.2943.1at 2867.739 kb on - strand, within Xcc-8004.2943.1at 2867.739 kb on - strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.848 kb on - strand, within Xcc-8004.2943.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,865,640 + Xcc-8004.2941.1 0.79 -0.7
2,865,640 + Xcc-8004.2941.1 0.79 +0.5
2,865,640 + Xcc-8004.2941.1 0.79 +2.5
2,865,641 - Xcc-8004.2941.1 0.80 +0.8
2,865,670 + Xcc-8004.2941.1 0.81 +2.7
2,865,671 - Xcc-8004.2941.1 0.81 +0.5
2,865,773 - Xcc-8004.2941.1 0.88 -1.8
2,865,990 + +0.5
2,865,991 - -1.1
2,865,991 - -2.1
2,865,996 + +3.0
2,865,997 - +1.0
2,865,997 - +2.0
2,866,033 + +1.3
2,866,033 + +0.3
2,866,090 + +2.3
2,866,091 - -3.0
2,866,091 - -0.5
2,866,154 - +0.2
2,866,154 - +0.7
2,866,165 + +1.6
2,866,165 + -0.3
2,866,166 - -1.6
2,866,169 + +2.2
2,866,169 + +0.0
2,866,305 - +0.0
2,866,309 - +0.3
2,866,382 + +1.0
2,866,382 + -0.6
2,866,383 - -1.5
2,866,383 - +2.4
2,866,498 - -2.8
2,866,610 + +1.0
2,866,611 - +3.4
2,866,611 - -1.3
2,866,611 - -0.4
2,866,611 - +1.3
2,866,688 + Xcc-8004.2942.1 0.13 -2.1
2,866,688 + Xcc-8004.2942.1 0.13 -2.3
2,866,689 - Xcc-8004.2942.1 0.13 -1.3
2,866,736 - Xcc-8004.2942.1 0.20 -1.1
2,866,736 - Xcc-8004.2942.1 0.20 -1.0
2,866,736 - Xcc-8004.2942.1 0.20 -2.4
2,866,820 + Xcc-8004.2942.1 0.34 -2.7
2,866,821 - Xcc-8004.2942.1 0.34 -1.8
2,866,821 - Xcc-8004.2942.1 0.34 -0.5
2,866,821 - Xcc-8004.2942.1 0.34 -1.7
2,867,109 - Xcc-8004.2942.1 0.81 -3.1
2,867,234 + +0.2
2,867,235 - +0.2
2,867,235 - -1.7
2,867,431 + Xcc-8004.2943.1 0.27 -1.1
2,867,436 + Xcc-8004.2943.1 0.28 -1.5
2,867,437 - Xcc-8004.2943.1 0.28 -0.8
2,867,738 + Xcc-8004.2943.1 0.67 -1.0
2,867,739 - Xcc-8004.2943.1 0.67 -3.0
2,867,739 - Xcc-8004.2943.1 0.67 -1.7
2,867,808 + Xcc-8004.2943.1 0.76 -0.5
2,867,808 + Xcc-8004.2943.1 0.76 -0.5
2,867,808 + Xcc-8004.2943.1 0.76 -2.9
2,867,809 - Xcc-8004.2943.1 0.76 +1.0
2,867,809 - Xcc-8004.2943.1 0.76 -0.5
2,867,809 - Xcc-8004.2943.1 0.76 -1.3
2,867,809 - Xcc-8004.2943.1 0.76 -2.6
2,867,809 - Xcc-8004.2943.1 0.76 -2.0
2,867,809 - Xcc-8004.2943.1 0.76 -2.3
2,867,809 - Xcc-8004.2943.1 0.76 +2.0
2,867,848 - Xcc-8004.2943.1 0.81 +1.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.3
2,868,155 + Xcc-8004.2944.1 0.23 -2.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.1
2,868,155 + Xcc-8004.2944.1 0.23 -2.7
2,868,155 + Xcc-8004.2944.1 0.23 -2.7
2,868,155 + Xcc-8004.2944.1 0.23 -0.3
2,868,155 + Xcc-8004.2944.1 0.23 -1.4
2,868,155 + Xcc-8004.2944.1 0.23 -0.6
2,868,155 + Xcc-8004.2944.1 0.23 -1.5
2,868,155 + Xcc-8004.2944.1 0.23 -0.3
2,868,155 + Xcc-8004.2944.1 0.23 -1.3
2,868,156 - Xcc-8004.2944.1 0.23 -4.0
2,868,156 - Xcc-8004.2944.1 0.23 -1.3
2,868,156 - Xcc-8004.2944.1 0.23 -1.5
2,868,156 - Xcc-8004.2944.1 0.23 -3.6
2,868,156 - Xcc-8004.2944.1 0.23 +2.0
2,868,156 - Xcc-8004.2944.1 0.23 +1.0
2,868,156 - Xcc-8004.2944.1 0.23 -0.6
2,868,156 - Xcc-8004.2944.1 0.23 -2.0
2,868,156 - Xcc-8004.2944.1 0.23 -2.2
2,868,156 - Xcc-8004.2944.1 0.23 -1.8

Or see this region's nucleotide sequence