Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2941.1 and Xcc-8004.2942.1 are separated by 643 nucleotides Xcc-8004.2942.1 and Xcc-8004.2943.1 overlap by 11 nucleotides Xcc-8004.2943.1 and Xcc-8004.2944.1 overlap by 7 nucleotides
Xcc-8004.2941.1: Xcc-8004.2941.1 - FIG01211701: hypothetical protein, at 2,864,379 to 2,865,965
Xcc-8004.2941.1
Xcc-8004.2942.1: Xcc-8004.2942.1 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 2,866,609 to 2,867,229
Xcc-8004.2942.1
Xcc-8004.2943.1: Xcc-8004.2943.1 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 2,867,219 to 2,867,995
Xcc-8004.2943.1
Xcc-8004.2944.1: Xcc-8004.2944.1 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 2,867,989 to 2,868,723
Xcc-8004.2944.1
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2865.640 kb on + strand, within Xcc-8004.2941.1 at 2865.640 kb on + strand, within Xcc-8004.2941.1 at 2865.640 kb on + strand, within Xcc-8004.2941.1 at 2865.641 kb on - strand, within Xcc-8004.2941.1 at 2865.670 kb on + strand, within Xcc-8004.2941.1 at 2865.671 kb on - strand, within Xcc-8004.2941.1 at 2865.773 kb on - strand, within Xcc-8004.2941.1 at 2865.990 kb on + strand at 2865.991 kb on - strand at 2865.991 kb on - strand at 2865.996 kb on + strand at 2865.997 kb on - strand at 2865.997 kb on - strand at 2866.033 kb on + strand at 2866.033 kb on + strand at 2866.090 kb on + strand at 2866.091 kb on - strand at 2866.091 kb on - strand at 2866.154 kb on - strand at 2866.154 kb on - strand at 2866.165 kb on + strand at 2866.165 kb on + strand at 2866.166 kb on - strand at 2866.169 kb on + strand at 2866.169 kb on + strand at 2866.305 kb on - strand at 2866.309 kb on - strand at 2866.382 kb on + strand at 2866.382 kb on + strand at 2866.383 kb on - strand at 2866.383 kb on - strand at 2866.498 kb on - strand at 2866.610 kb on + strand at 2866.611 kb on - strand at 2866.611 kb on - strand at 2866.611 kb on - strand at 2866.611 kb on - strand at 2866.688 kb on + strand, within Xcc-8004.2942.1 at 2866.688 kb on + strand, within Xcc-8004.2942.1 at 2866.689 kb on - strand, within Xcc-8004.2942.1 at 2866.736 kb on - strand, within Xcc-8004.2942.1 at 2866.736 kb on - strand, within Xcc-8004.2942.1 at 2866.736 kb on - strand, within Xcc-8004.2942.1 at 2866.820 kb on + strand, within Xcc-8004.2942.1 at 2866.821 kb on - strand, within Xcc-8004.2942.1 at 2866.821 kb on - strand, within Xcc-8004.2942.1 at 2866.821 kb on - strand, within Xcc-8004.2942.1 at 2867.109 kb on - strand, within Xcc-8004.2942.1 at 2867.234 kb on + strand at 2867.235 kb on - strand at 2867.235 kb on - strand at 2867.431 kb on + strand, within Xcc-8004.2943.1 at 2867.436 kb on + strand, within Xcc-8004.2943.1 at 2867.437 kb on - strand, within Xcc-8004.2943.1 at 2867.738 kb on + strand, within Xcc-8004.2943.1 at 2867.739 kb on - strand, within Xcc-8004.2943.1 at 2867.739 kb on - strand, within Xcc-8004.2943.1 at 2867.808 kb on + strand, within Xcc-8004.2943.1 at 2867.808 kb on + strand, within Xcc-8004.2943.1 at 2867.808 kb on + strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.809 kb on - strand, within Xcc-8004.2943.1 at 2867.848 kb on - strand, within Xcc-8004.2943.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.155 kb on + strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1 at 2868.156 kb on - strand, within Xcc-8004.2944.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 2,865,640 + Xcc-8004.2941.1 0.79 -0.7 2,865,640 + Xcc-8004.2941.1 0.79 +0.5 2,865,640 + Xcc-8004.2941.1 0.79 +2.5 2,865,641 - Xcc-8004.2941.1 0.80 +0.8 2,865,670 + Xcc-8004.2941.1 0.81 +2.7 2,865,671 - Xcc-8004.2941.1 0.81 +0.5 2,865,773 - Xcc-8004.2941.1 0.88 -1.8 2,865,990 + +0.5 2,865,991 - -1.1 2,865,991 - -2.1 2,865,996 + +3.0 2,865,997 - +1.0 2,865,997 - +2.0 2,866,033 + +1.3 2,866,033 + +0.3 2,866,090 + +2.3 2,866,091 - -3.0 2,866,091 - -0.5 2,866,154 - +0.2 2,866,154 - +0.7 2,866,165 + +1.6 2,866,165 + -0.3 2,866,166 - -1.6 2,866,169 + +2.2 2,866,169 + +0.0 2,866,305 - +0.0 2,866,309 - +0.3 2,866,382 + +1.0 2,866,382 + -0.6 2,866,383 - -1.5 2,866,383 - +2.4 2,866,498 - -2.8 2,866,610 + +1.0 2,866,611 - +3.4 2,866,611 - -1.3 2,866,611 - -0.4 2,866,611 - +1.3 2,866,688 + Xcc-8004.2942.1 0.13 -2.1 2,866,688 + Xcc-8004.2942.1 0.13 -2.3 2,866,689 - Xcc-8004.2942.1 0.13 -1.3 2,866,736 - Xcc-8004.2942.1 0.20 -1.1 2,866,736 - Xcc-8004.2942.1 0.20 -1.0 2,866,736 - Xcc-8004.2942.1 0.20 -2.4 2,866,820 + Xcc-8004.2942.1 0.34 -2.7 2,866,821 - Xcc-8004.2942.1 0.34 -1.8 2,866,821 - Xcc-8004.2942.1 0.34 -0.5 2,866,821 - Xcc-8004.2942.1 0.34 -1.7 2,867,109 - Xcc-8004.2942.1 0.81 -3.1 2,867,234 + +0.2 2,867,235 - +0.2 2,867,235 - -1.7 2,867,431 + Xcc-8004.2943.1 0.27 -1.1 2,867,436 + Xcc-8004.2943.1 0.28 -1.5 2,867,437 - Xcc-8004.2943.1 0.28 -0.8 2,867,738 + Xcc-8004.2943.1 0.67 -1.0 2,867,739 - Xcc-8004.2943.1 0.67 -3.0 2,867,739 - Xcc-8004.2943.1 0.67 -1.7 2,867,808 + Xcc-8004.2943.1 0.76 -0.5 2,867,808 + Xcc-8004.2943.1 0.76 -0.5 2,867,808 + Xcc-8004.2943.1 0.76 -2.9 2,867,809 - Xcc-8004.2943.1 0.76 +1.0 2,867,809 - Xcc-8004.2943.1 0.76 -0.5 2,867,809 - Xcc-8004.2943.1 0.76 -1.3 2,867,809 - Xcc-8004.2943.1 0.76 -2.6 2,867,809 - Xcc-8004.2943.1 0.76 -2.0 2,867,809 - Xcc-8004.2943.1 0.76 -2.3 2,867,809 - Xcc-8004.2943.1 0.76 +2.0 2,867,848 - Xcc-8004.2943.1 0.81 +1.0 2,868,155 + Xcc-8004.2944.1 0.23 -2.3 2,868,155 + Xcc-8004.2944.1 0.23 -2.0 2,868,155 + Xcc-8004.2944.1 0.23 -2.0 2,868,155 + Xcc-8004.2944.1 0.23 -2.1 2,868,155 + Xcc-8004.2944.1 0.23 -2.7 2,868,155 + Xcc-8004.2944.1 0.23 -2.7 2,868,155 + Xcc-8004.2944.1 0.23 -0.3 2,868,155 + Xcc-8004.2944.1 0.23 -1.4 2,868,155 + Xcc-8004.2944.1 0.23 -0.6 2,868,155 + Xcc-8004.2944.1 0.23 -1.5 2,868,155 + Xcc-8004.2944.1 0.23 -0.3 2,868,155 + Xcc-8004.2944.1 0.23 -1.3 2,868,156 - Xcc-8004.2944.1 0.23 -4.0 2,868,156 - Xcc-8004.2944.1 0.23 -1.3 2,868,156 - Xcc-8004.2944.1 0.23 -1.5 2,868,156 - Xcc-8004.2944.1 0.23 -3.6 2,868,156 - Xcc-8004.2944.1 0.23 +2.0 2,868,156 - Xcc-8004.2944.1 0.23 +1.0 2,868,156 - Xcc-8004.2944.1 0.23 -0.6 2,868,156 - Xcc-8004.2944.1 0.23 -2.0 2,868,156 - Xcc-8004.2944.1 0.23 -2.2 2,868,156 - Xcc-8004.2944.1 0.23 -1.8
Or see this region's nucleotide sequence