Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2929.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2927.1 and Xcc-8004.2928.1 overlap by 4 nucleotidesXcc-8004.2928.1 and Xcc-8004.2929.1 are separated by 34 nucleotidesXcc-8004.2929.1 and Xcc-8004.2930.1 overlap by 4 nucleotidesXcc-8004.2930.1 and Xcc-8004.2931.1 overlap by 29 nucleotides Xcc-8004.2927.1: Xcc-8004.2927.1 - FIG01210489: hypothetical protein, at 2,850,817 to 2,852,682 Xcc-8004.2927.1 Xcc-8004.2928.1: Xcc-8004.2928.1 - FIG01210777: hypothetical protein, at 2,852,679 to 2,852,972 Xcc-8004.2928.1 Xcc-8004.2929.1: Xcc-8004.2929.1 - D-2-hydroxyglutarate dehydrogenase, at 2,853,007 to 2,854,425 Xcc-8004.2929.1 Xcc-8004.2930.1: Xcc-8004.2930.1 - hypothetical protein, at 2,854,422 to 2,854,661 Xcc-8004.2930.1 Xcc-8004.2931.1: Xcc-8004.2931.1 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 2,854,633 to 2,855,874 Xcc-8004.2931.1 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2852.051 kb on - strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.151 kb on + strand, within Xcc-8004.2927.1at 2852.151 kb on + strand, within Xcc-8004.2927.1at 2852.152 kb on - strand, within Xcc-8004.2927.1at 2852.163 kb on - strand, within Xcc-8004.2927.1at 2852.163 kb on - strand, within Xcc-8004.2927.1at 2852.858 kb on + strand, within Xcc-8004.2928.1at 2852.858 kb on + strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.420 kb on - strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2854.044 kb on - strand, within Xcc-8004.2929.1at 2854.343 kb on + strandat 2854.599 kb on + strand, within Xcc-8004.2930.1at 2854.599 kb on + strand, within Xcc-8004.2930.1at 2854.844 kb on + strand, within Xcc-8004.2931.1at 2854.844 kb on + strand, within Xcc-8004.2931.1at 2854.844 kb on + strand, within Xcc-8004.2931.1at 2854.845 kb on - strand, within Xcc-8004.2931.1at 2854.954 kb on + strand, within Xcc-8004.2931.1at 2854.954 kb on + strand, within Xcc-8004.2931.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,852,051 - Xcc-8004.2927.1 0.66 -2.5
2,852,096 + Xcc-8004.2927.1 0.69 -0.5
2,852,096 + Xcc-8004.2927.1 0.69 -0.8
2,852,096 + Xcc-8004.2927.1 0.69 +2.8
2,852,096 + Xcc-8004.2927.1 0.69 -0.8
2,852,096 + Xcc-8004.2927.1 0.69 -1.0
2,852,114 + Xcc-8004.2927.1 0.70 -1.4
2,852,114 + Xcc-8004.2927.1 0.70 -1.4
2,852,114 + Xcc-8004.2927.1 0.70 -2.2
2,852,115 - Xcc-8004.2927.1 0.70 +0.8
2,852,115 - Xcc-8004.2927.1 0.70 +1.3
2,852,115 - Xcc-8004.2927.1 0.70 -0.8
2,852,115 - Xcc-8004.2927.1 0.70 +0.5
2,852,115 - Xcc-8004.2927.1 0.70 -0.7
2,852,151 + Xcc-8004.2927.1 0.71 +0.5
2,852,151 + Xcc-8004.2927.1 0.71 -1.3
2,852,152 - Xcc-8004.2927.1 0.72 -0.3
2,852,163 - Xcc-8004.2927.1 0.72 -0.5
2,852,163 - Xcc-8004.2927.1 0.72 +0.1
2,852,858 + Xcc-8004.2928.1 0.61 -0.2
2,852,858 + Xcc-8004.2928.1 0.61 -2.5
2,852,859 - Xcc-8004.2928.1 0.61 +0.5
2,852,859 - Xcc-8004.2928.1 0.61 -1.1
2,852,859 - Xcc-8004.2928.1 0.61 +0.9
2,852,859 - Xcc-8004.2928.1 0.61 +0.3
2,852,859 - Xcc-8004.2928.1 0.61 -2.2
2,852,859 - Xcc-8004.2928.1 0.61 -0.5
2,853,288 + Xcc-8004.2929.1 0.20 -1.3
2,853,288 + Xcc-8004.2929.1 0.20 -0.3
2,853,288 + Xcc-8004.2929.1 0.20 -0.2
2,853,288 + Xcc-8004.2929.1 0.20 +2.0
2,853,289 - Xcc-8004.2929.1 0.20 -0.5
2,853,289 - Xcc-8004.2929.1 0.20 -0.7
2,853,289 - Xcc-8004.2929.1 0.20 -1.3
2,853,289 - Xcc-8004.2929.1 0.20 -2.7
2,853,420 - Xcc-8004.2929.1 0.29 -2.0
2,853,602 + Xcc-8004.2929.1 0.42 -1.4
2,853,602 + Xcc-8004.2929.1 0.42 +0.5
2,853,602 + Xcc-8004.2929.1 0.42 -2.6
2,853,603 - Xcc-8004.2929.1 0.42 -0.3
2,853,603 - Xcc-8004.2929.1 0.42 -0.5
2,853,603 - Xcc-8004.2929.1 0.42 -0.4
2,853,603 - Xcc-8004.2929.1 0.42 -1.6
2,854,044 - Xcc-8004.2929.1 0.73 -1.8
2,854,343 + +0.0
2,854,599 + Xcc-8004.2930.1 0.74 -1.5
2,854,599 + Xcc-8004.2930.1 0.74 +0.4
2,854,844 + Xcc-8004.2931.1 0.17 -2.5
2,854,844 + Xcc-8004.2931.1 0.17 -0.8
2,854,844 + Xcc-8004.2931.1 0.17 -2.5
2,854,845 - Xcc-8004.2931.1 0.17 -1.0
2,854,954 + Xcc-8004.2931.1 0.26 +1.0
2,854,954 + Xcc-8004.2931.1 0.26 -1.3

Or see this region's nucleotide sequence