Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.290.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.289.1 and Xcc-8004.290.1 are separated by 96 nucleotidesXcc-8004.290.1 and Xcc-8004.291.1 are separated by 64 nucleotidesXcc-8004.291.1 and Xcc-8004.292.1 are separated by 102 nucleotidesXcc-8004.292.1 and Xcc-8004.293.1 overlap by 4 nucleotides Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717 Xcc-8004.289.1 Xcc-8004.290.1: Xcc-8004.290.1 - NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster, at 277,814 to 278,824 Xcc-8004.290.1 Xcc-8004.291.1: Xcc-8004.291.1 - hypothetical protein, at 278,889 to 279,047 Xcc-8004.291.1 Xcc-8004.292.1: Xcc-8004.292.1 - acetyltransferase, GNAT family, at 279,150 to 279,632 Xcc-8004.292.1 Xcc-8004.293.1: Xcc-8004.293.1 - hypothetical protein, at 279,629 to 280,735 Xcc-8004.293.1 Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 277.237 kb on + strand, within Xcc-8004.289.1at 277.431 kb on + strand, within Xcc-8004.289.1at 277.715 kb on + strandat 277.715 kb on + strandat 277.715 kb on + strandat 277.715 kb on + strandat 277.716 kb on - strandat 277.716 kb on - strandat 277.716 kb on - strandat 277.716 kb on - strandat 278.058 kb on - strand, within Xcc-8004.290.1at 278.058 kb on - strand, within Xcc-8004.290.1at 278.132 kb on + strand, within Xcc-8004.290.1at 278.132 kb on + strand, within Xcc-8004.290.1at 278.133 kb on - strand, within Xcc-8004.290.1at 278.133 kb on - strand, within Xcc-8004.290.1at 278.420 kb on + strand, within Xcc-8004.290.1at 278.420 kb on + strand, within Xcc-8004.290.1at 278.420 kb on + strand, within Xcc-8004.290.1at 278.421 kb on - strand, within Xcc-8004.290.1at 278.421 kb on - strand, within Xcc-8004.290.1at 278.499 kb on - strand, within Xcc-8004.290.1at 278.538 kb on + strand, within Xcc-8004.290.1at 278.694 kb on + strand, within Xcc-8004.290.1at 278.694 kb on + strand, within Xcc-8004.290.1at 278.695 kb on - strand, within Xcc-8004.290.1at 278.695 kb on - strand, within Xcc-8004.290.1at 278.711 kb on + strand, within Xcc-8004.290.1at 278.712 kb on - strand, within Xcc-8004.290.1at 278.712 kb on - strand, within Xcc-8004.290.1at 278.744 kb on + strandat 278.744 kb on + strandat 278.745 kb on - strandat 278.745 kb on - strandat 278.845 kb on + strandat 278.845 kb on + strandat 278.845 kb on + strandat 278.845 kb on + strandat 278.846 kb on - strandat 278.846 kb on - strandat 278.846 kb on - strandat 278.846 kb on - strandat 278.846 kb on - strandat 278.899 kb on - strandat 278.899 kb on - strandat 278.954 kb on + strand, within Xcc-8004.291.1at 279.045 kb on + strandat 279.045 kb on + strandat 279.045 kb on + strandat 279.045 kb on + strandat 279.046 kb on - strandat 279.046 kb on - strandat 279.151 kb on + strandat 279.152 kb on - strandat 279.152 kb on - strandat 279.169 kb on + strandat 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.264 kb on + strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.265 kb on - strand, within Xcc-8004.292.1at 279.388 kb on + strand, within Xcc-8004.292.1at 279.388 kb on + strand, within Xcc-8004.292.1at 279.388 kb on + strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.389 kb on - strand, within Xcc-8004.292.1at 279.439 kb on + strand, within Xcc-8004.292.1at 279.439 kb on + strand, within Xcc-8004.292.1at 279.439 kb on + strand, within Xcc-8004.292.1at 279.439 kb on + strand, within Xcc-8004.292.1at 279.440 kb on - strand, within Xcc-8004.292.1at 279.440 kb on - strand, within Xcc-8004.292.1at 279.440 kb on - strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.468 kb on + strand, within Xcc-8004.292.1at 279.598 kb on + strandat 279.654 kb on + strandat 279.654 kb on + strandat 279.654 kb on + strandat 279.654 kb on + strandat 279.655 kb on - strandat 279.655 kb on - strandat 279.707 kb on - strandat 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.753 kb on + strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1at 279.754 kb on - strand, within Xcc-8004.293.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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277,237 + Xcc-8004.289.1 0.71 +1.6
277,431 + Xcc-8004.289.1 0.83 +0.4
277,715 + +0.1
277,715 + +2.4
277,715 + -1.5
277,715 + +1.3
277,716 - -0.6
277,716 - -1.4
277,716 - -2.2
277,716 - -0.9
278,058 - Xcc-8004.290.1 0.24 -2.9
278,058 - Xcc-8004.290.1 0.24 +0.1
278,132 + Xcc-8004.290.1 0.31 -1.7
278,132 + Xcc-8004.290.1 0.31 +0.2
278,133 - Xcc-8004.290.1 0.32 +0.8
278,133 - Xcc-8004.290.1 0.32 -1.2
278,420 + Xcc-8004.290.1 0.60 -1.3
278,420 + Xcc-8004.290.1 0.60 -0.2
278,420 + Xcc-8004.290.1 0.60 +0.2
278,421 - Xcc-8004.290.1 0.60 +0.1
278,421 - Xcc-8004.290.1 0.60 -2.0
278,499 - Xcc-8004.290.1 0.68 -2.7
278,538 + Xcc-8004.290.1 0.72 -0.6
278,694 + Xcc-8004.290.1 0.87 -0.9
278,694 + Xcc-8004.290.1 0.87 -1.2
278,695 - Xcc-8004.290.1 0.87 -0.4
278,695 - Xcc-8004.290.1 0.87 -2.1
278,711 + Xcc-8004.290.1 0.89 +0.4
278,712 - Xcc-8004.290.1 0.89 +0.8
278,712 - Xcc-8004.290.1 0.89 +0.8
278,744 + -1.3
278,744 + -0.2
278,745 - +0.1
278,745 - +0.8
278,845 + +0.1
278,845 + +0.6
278,845 + -1.2
278,845 + -0.4
278,846 - +0.2
278,846 - -3.3
278,846 - -0.3
278,846 - -1.9
278,846 - -0.4
278,899 - -2.0
278,899 - -0.9
278,954 + Xcc-8004.291.1 0.41 -0.8
279,045 + -2.3
279,045 + +1.1
279,045 + +1.2
279,045 + +0.9
279,046 - -1.0
279,046 - +1.8
279,151 + -1.1
279,152 - +1.3
279,152 - -2.1
279,169 + -2.3
279,264 + Xcc-8004.292.1 0.24 -2.3
279,264 + Xcc-8004.292.1 0.24 +0.4
279,264 + Xcc-8004.292.1 0.24 -1.9
279,264 + Xcc-8004.292.1 0.24 +1.1
279,264 + Xcc-8004.292.1 0.24 +1.4
279,264 + Xcc-8004.292.1 0.24 +1.4
279,264 + Xcc-8004.292.1 0.24 -0.6
279,264 + Xcc-8004.292.1 0.24 -2.7
279,264 + Xcc-8004.292.1 0.24 -0.2
279,265 - Xcc-8004.292.1 0.24 -0.8
279,265 - Xcc-8004.292.1 0.24 -2.4
279,265 - Xcc-8004.292.1 0.24 -1.9
279,265 - Xcc-8004.292.1 0.24 +0.2
279,265 - Xcc-8004.292.1 0.24 +4.0
279,265 - Xcc-8004.292.1 0.24 +2.6
279,265 - Xcc-8004.292.1 0.24 +0.4
279,265 - Xcc-8004.292.1 0.24 -0.4
279,265 - Xcc-8004.292.1 0.24 +1.9
279,388 + Xcc-8004.292.1 0.49 +0.6
279,388 + Xcc-8004.292.1 0.49 -1.7
279,388 + Xcc-8004.292.1 0.49 +0.9
279,389 - Xcc-8004.292.1 0.49 -0.8
279,389 - Xcc-8004.292.1 0.49 -1.1
279,389 - Xcc-8004.292.1 0.49 -0.8
279,389 - Xcc-8004.292.1 0.49 -1.2
279,389 - Xcc-8004.292.1 0.49 +0.2
279,389 - Xcc-8004.292.1 0.49 +1.2
279,389 - Xcc-8004.292.1 0.49 +1.4
279,389 - Xcc-8004.292.1 0.49 +0.7
279,389 - Xcc-8004.292.1 0.49 -1.6
279,439 + Xcc-8004.292.1 0.60 +0.3
279,439 + Xcc-8004.292.1 0.60 +0.8
279,439 + Xcc-8004.292.1 0.60 -0.9
279,439 + Xcc-8004.292.1 0.60 +0.4
279,440 - Xcc-8004.292.1 0.60 +1.4
279,440 - Xcc-8004.292.1 0.60 +1.6
279,440 - Xcc-8004.292.1 0.60 -0.1
279,468 + Xcc-8004.292.1 0.66 -0.4
279,468 + Xcc-8004.292.1 0.66 +0.4
279,468 + Xcc-8004.292.1 0.66 -0.6
279,468 + Xcc-8004.292.1 0.66 +0.0
279,468 + Xcc-8004.292.1 0.66 +1.4
279,468 + Xcc-8004.292.1 0.66 -0.4
279,598 + +1.8
279,654 + -2.0
279,654 + -0.4
279,654 + -0.1
279,654 + -3.1
279,655 - -2.9
279,655 - -0.2
279,707 - -3.0
279,753 + Xcc-8004.293.1 0.11 -2.0
279,753 + Xcc-8004.293.1 0.11 +0.8
279,753 + Xcc-8004.293.1 0.11 +0.1
279,753 + Xcc-8004.293.1 0.11 +0.0
279,753 + Xcc-8004.293.1 0.11 +0.6
279,753 + Xcc-8004.293.1 0.11 -1.7
279,753 + Xcc-8004.293.1 0.11 -0.9
279,753 + Xcc-8004.293.1 0.11 -2.8
279,754 - Xcc-8004.293.1 0.11 -3.0
279,754 - Xcc-8004.293.1 0.11 +0.3
279,754 - Xcc-8004.293.1 0.11 +2.4
279,754 - Xcc-8004.293.1 0.11 +0.4
279,754 - Xcc-8004.293.1 0.11 -1.9
279,754 - Xcc-8004.293.1 0.11 -0.4
279,754 - Xcc-8004.293.1 0.11 +1.3

Or see this region's nucleotide sequence