Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2896.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,817,002	-				+0.6
2,817,002	-				-3.8
2,817,083	+				-1.5
2,817,083	+				+1.9
2,817,084	-				-0.9
2,817,084	-				+0.6
2,817,084	-				+0.0
2,817,084	-				-0.3
2,817,084	-				-0.9
2,817,110	+				+0.8
2,817,110	+				+0.5
2,817,110	+				-1.5
2,817,111	-				+0.1
2,817,111	-				+2.0
2,817,111	-				+0.6
2,817,111	-				+0.2
2,817,111	-				+0.6
2,817,126	+				+0.3
2,817,127	-				+1.5
2,817,127	-				+0.0
2,817,369	+				-1.3
2,817,369	+				-1.3
2,817,369	+				+1.0
2,817,369	+				+4.5
2,817,369	+				+1.7
2,817,369	+				-0.4
2,817,370	-				-2.9
2,817,417	+		Xcc-8004.2895.1	0.18	-2.0
2,817,417	+		Xcc-8004.2895.1	0.18	-0.3
2,817,417	+		Xcc-8004.2895.1	0.18	+1.2
2,817,417	+		Xcc-8004.2895.1	0.18	+0.7
2,817,418	-		Xcc-8004.2895.1	0.18	+1.2
2,817,418	-		Xcc-8004.2895.1	0.18	+0.0
2,817,491	-		Xcc-8004.2895.1	0.34	-1.8
2,817,641	+		Xcc-8004.2895.1	0.68	-0.6
2,817,641	+		Xcc-8004.2895.1	0.68	+0.6
2,817,641	+		Xcc-8004.2895.1	0.68	+0.2
2,817,641	+		Xcc-8004.2895.1	0.68	-0.5
2,817,642	-		Xcc-8004.2895.1	0.68	+2.6
2,817,642	-		Xcc-8004.2895.1	0.68	+2.0
2,817,642	-		Xcc-8004.2895.1	0.68	+1.6
2,817,749	+				-1.1
2,817,750	-				-1.1
2,817,750	-				-1.9
2,817,813	+				-1.9
2,817,813	+				-0.8
2,817,813	+				-0.9
2,817,813	+				-0.1
2,817,814	-				-1.8
2,817,814	-				-1.1
2,817,814	-				-0.2
2,817,814	-				+1.6
2,817,814	-				-0.9
2,817,814	-				-1.7
2,817,863	+				-1.7
2,818,034	+				-0.5
2,818,034	+				+0.6
2,818,034	+				+2.0
2,818,034	+				+3.0
2,818,034	+				+1.2
2,818,034	+				+1.7
2,818,034	+				-2.2
2,818,035	-				+0.7
2,818,035	-				-1.1
2,818,035	-				-0.5
2,818,039	-				-0.3
2,818,077	+		Xcc-8004.2896.1	0.12	+0.3
2,818,077	+		Xcc-8004.2896.1	0.12	-0.5
2,818,077	+		Xcc-8004.2896.1	0.12	+0.4
2,818,078	-		Xcc-8004.2896.1	0.12	+1.0
2,818,146	+		Xcc-8004.2896.1	0.16	-0.5
2,818,147	-		Xcc-8004.2896.1	0.16	-1.5
2,818,209	+		Xcc-8004.2896.1	0.19	-0.3
2,818,209	+		Xcc-8004.2896.1	0.19	-0.8
2,818,210	-		Xcc-8004.2896.1	0.19	-0.6
2,818,210	-		Xcc-8004.2896.1	0.19	-0.3
2,818,395	+		Xcc-8004.2896.1	0.30	+1.0
2,818,395	+		Xcc-8004.2896.1	0.30	-0.3
2,818,395	+		Xcc-8004.2896.1	0.30	-2.4
2,818,395	+		Xcc-8004.2896.1	0.30	-0.3
2,818,395	+		Xcc-8004.2896.1	0.30	-1.0
2,818,396	-		Xcc-8004.2896.1	0.31	-1.4
2,818,419	+		Xcc-8004.2896.1	0.32	-1.4
2,818,524	+		Xcc-8004.2896.1	0.38	-0.7
2,818,525	-		Xcc-8004.2896.1	0.38	-0.8
2,818,525	-		Xcc-8004.2896.1	0.38	+2.2
2,818,671	+		Xcc-8004.2896.1	0.47	-2.5
2,818,672	-		Xcc-8004.2896.1	0.47	-0.4
2,818,803	-		Xcc-8004.2896.1	0.55	-0.5
2,818,814	+		Xcc-8004.2896.1	0.55	-0.5
2,818,814	+		Xcc-8004.2896.1	0.55	-2.2
2,818,815	-		Xcc-8004.2896.1	0.55	+4.0
2,818,815	-		Xcc-8004.2896.1	0.55	-0.5
2,818,815	-		Xcc-8004.2896.1	0.55	-1.1
2,818,815	-		Xcc-8004.2896.1	0.55	-0.9
2,818,815	-		Xcc-8004.2896.1	0.55	-1.9
2,818,815	-		Xcc-8004.2896.1	0.55	+0.7
2,818,815	-		Xcc-8004.2896.1	0.55	+0.8
2,818,838	+		Xcc-8004.2896.1	0.57	+1.0
2,818,838	+		Xcc-8004.2896.1	0.57	-0.4
2,818,839	-		Xcc-8004.2896.1	0.57	-1.4
2,818,963	-		Xcc-8004.2896.1	0.64	+0.2
2,819,019	+		Xcc-8004.2896.1	0.68	+0.5
2,819,019	+		Xcc-8004.2896.1	0.68	-2.3
2,819,020	-		Xcc-8004.2896.1	0.68	+0.3
2,819,145	+		Xcc-8004.2896.1	0.75	+1.0
2,819,241	+		Xcc-8004.2896.1	0.81	-1.9
2,819,241	+		Xcc-8004.2896.1	0.81	-1.0
2,819,241	+		Xcc-8004.2896.1	0.81	-1.4
2,819,241	+		Xcc-8004.2896.1	0.81	+0.7
2,819,242	-		Xcc-8004.2896.1	0.81	+2.5
2,819,242	-		Xcc-8004.2896.1	0.81	-0.5
2,819,242	-		Xcc-8004.2896.1	0.81	+1.2
2,819,242	-		Xcc-8004.2896.1	0.81	-0.4
2,819,242	-		Xcc-8004.2896.1	0.81	-1.9
2,819,242	-		Xcc-8004.2896.1	0.81	-0.4
2,819,242	-		Xcc-8004.2896.1	0.81	-1.8
2,819,243	+		Xcc-8004.2896.1	0.81	-0.2
2,819,244	-		Xcc-8004.2896.1	0.81	+0.6
2,819,244	-		Xcc-8004.2896.1	0.81	-1.3
2,819,434	+				-1.2
2,819,434	+				+0.0
2,819,435	-				-0.5
2,819,435	-				-2.1
2,819,435	-				+2.0
2,819,467	-				+0.6
2,819,562	+				+0.8
2,819,563	-				-2.5
2,819,563	-				-3.4
2,819,654	+				+2.0
2,819,654	+				+2.0
2,819,654	+				+0.5
2,819,654	+				-0.4
2,819,655	-				+1.7
2,819,692	+				-1.8
2,819,692	+				-1.5
2,819,693	-				+1.0
2,819,693	-				+1.0
2,819,767	+				-2.3
2,819,768	-				+1.0
2,819,768	-				+1.1
2,819,773	+				+0.0
2,819,787	+				+1.0
2,819,788	-				+0.7
2,819,819	+				-0.5
2,819,820	-				+2.0
2,819,820	-				-1.5
2,819,830	+		Xcc-8004.2897.1	0.10	+0.7
2,819,830	+		Xcc-8004.2897.1	0.10	-2.2
2,819,830	+		Xcc-8004.2897.1	0.10	-0.2
2,819,831	-		Xcc-8004.2897.1	0.10	-2.0
2,819,831	-		Xcc-8004.2897.1	0.10	+0.3
2,819,831	-		Xcc-8004.2897.1	0.10	+0.7
2,819,831	-		Xcc-8004.2897.1	0.10	-0.5
2,819,932	+		Xcc-8004.2897.1	0.22	+0.6
2,819,932	+		Xcc-8004.2897.1	0.22	-0.4
2,819,933	-		Xcc-8004.2897.1	0.22	+2.0
2,820,056	+		Xcc-8004.2897.1	0.36	+0.9
2,820,171	+		Xcc-8004.2897.1	0.49	-0.7
2,820,172	-		Xcc-8004.2897.1	0.50	+2.0
2,820,172	-		Xcc-8004.2897.1	0.50	+1.1
2,820,172	-		Xcc-8004.2897.1	0.50	+0.7
2,820,237	+		Xcc-8004.2897.1	0.57	-1.3
2,820,237	+		Xcc-8004.2897.1	0.57	+1.8
2,820,238	-		Xcc-8004.2897.1	0.57	+0.5
2,820,238	-		Xcc-8004.2897.1	0.57	-2.3
2,820,238	-		Xcc-8004.2897.1	0.57	+0.7
2,820,257	+		Xcc-8004.2897.1	0.59	-0.8
2,820,257	+		Xcc-8004.2897.1	0.59	-3.3
2,820,258	-		Xcc-8004.2897.1	0.59	-0.3
2,820,323	+		Xcc-8004.2897.1	0.67	+0.3
2,820,516	+		Xcc-8004.2897.1	0.89	+1.9
2,820,520	+		Xcc-8004.2897.1	0.90	+2.4
2,820,520	+		Xcc-8004.2897.1	0.90	+1.8
2,820,520	+		Xcc-8004.2897.1	0.90	+1.3
2,820,520	+		Xcc-8004.2897.1	0.90	+1.6
2,820,521	-		Xcc-8004.2897.1	0.90	-0.7
2,820,521	-		Xcc-8004.2897.1	0.90	+2.0
2,820,553	+				-0.4
2,820,553	+				+1.3
2,820,554	-				+1.1
2,820,554	-				+0.5
2,820,554	-				-1.1