Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2868.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2867.1 and Xcc-8004.2868.1 overlap by 4 nucleotidesXcc-8004.2868.1 and Xcc-8004.2869.1 are separated by 231 nucleotides Xcc-8004.2867.1: Xcc-8004.2867.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,780,710 to 2,782,347 Xcc-8004.2867.1 Xcc-8004.2868.1: Xcc-8004.2868.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,782,344 to 2,785,196 Xcc-8004.2868.1 Xcc-8004.2869.1: Xcc-8004.2869.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,785,428 to 2,787,686 Xcc-8004.2869.1 Position (kb) 2782 2783 2784 2785 2786Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2782.342 kb on + strandat 2782.415 kb on + strandat 2782.416 kb on - strandat 2782.519 kb on - strandat 2782.519 kb on - strandat 2782.519 kb on - strandat 2782.581 kb on + strandat 2782.836 kb on + strand, within Xcc-8004.2868.1at 2782.837 kb on - strand, within Xcc-8004.2868.1at 2782.956 kb on + strand, within Xcc-8004.2868.1at 2782.956 kb on + strand, within Xcc-8004.2868.1at 2782.957 kb on - strand, within Xcc-8004.2868.1at 2782.957 kb on - strand, within Xcc-8004.2868.1at 2782.957 kb on - strand, within Xcc-8004.2868.1at 2782.962 kb on + strand, within Xcc-8004.2868.1at 2782.962 kb on + strand, within Xcc-8004.2868.1at 2782.962 kb on + strand, within Xcc-8004.2868.1at 2783.109 kb on + strand, within Xcc-8004.2868.1at 2783.119 kb on + strand, within Xcc-8004.2868.1at 2783.119 kb on + strand, within Xcc-8004.2868.1at 2783.119 kb on + strand, within Xcc-8004.2868.1at 2783.120 kb on - strand, within Xcc-8004.2868.1at 2783.120 kb on - strand, within Xcc-8004.2868.1at 2783.120 kb on - strand, within Xcc-8004.2868.1at 2783.274 kb on + strand, within Xcc-8004.2868.1at 2783.275 kb on - strand, within Xcc-8004.2868.1at 2783.275 kb on - strand, within Xcc-8004.2868.1at 2783.279 kb on - strand, within Xcc-8004.2868.1at 2783.335 kb on - strand, within Xcc-8004.2868.1at 2783.805 kb on + strand, within Xcc-8004.2868.1at 2783.805 kb on + strand, within Xcc-8004.2868.1at 2783.884 kb on - strand, within Xcc-8004.2868.1at 2783.990 kb on - strand, within Xcc-8004.2868.1at 2784.081 kb on + strand, within Xcc-8004.2868.1at 2784.599 kb on + strand, within Xcc-8004.2868.1at 2785.675 kb on - strand, within Xcc-8004.2869.1at 2785.680 kb on + strand, within Xcc-8004.2869.1at 2785.680 kb on + strand, within Xcc-8004.2869.1at 2785.716 kb on + strand, within Xcc-8004.2869.1at 2785.780 kb on - strand, within Xcc-8004.2869.1at 2785.842 kb on + strand, within Xcc-8004.2869.1at 2785.935 kb on + strand, within Xcc-8004.2869.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,782,342 + +1.0
2,782,415 + -2.2
2,782,416 - +2.4
2,782,519 - +0.5
2,782,519 - -1.3
2,782,519 - -0.1
2,782,581 + -3.2
2,782,836 + Xcc-8004.2868.1 0.17 +1.3
2,782,837 - Xcc-8004.2868.1 0.17 -1.3
2,782,956 + Xcc-8004.2868.1 0.21 -0.5
2,782,956 + Xcc-8004.2868.1 0.21 -2.7
2,782,957 - Xcc-8004.2868.1 0.21 +3.0
2,782,957 - Xcc-8004.2868.1 0.21 +2.1
2,782,957 - Xcc-8004.2868.1 0.21 +3.0
2,782,962 + Xcc-8004.2868.1 0.22 -0.0
2,782,962 + Xcc-8004.2868.1 0.22 -1.3
2,782,962 + Xcc-8004.2868.1 0.22 -1.5
2,783,109 + Xcc-8004.2868.1 0.27 +0.7
2,783,119 + Xcc-8004.2868.1 0.27 +0.0
2,783,119 + Xcc-8004.2868.1 0.27 -2.5
2,783,119 + Xcc-8004.2868.1 0.27 +4.5
2,783,120 - Xcc-8004.2868.1 0.27 -1.0
2,783,120 - Xcc-8004.2868.1 0.27 +2.0
2,783,120 - Xcc-8004.2868.1 0.27 -0.8
2,783,274 + Xcc-8004.2868.1 0.33 -1.3
2,783,275 - Xcc-8004.2868.1 0.33 +2.5
2,783,275 - Xcc-8004.2868.1 0.33 +1.0
2,783,279 - Xcc-8004.2868.1 0.33 -0.5
2,783,335 - Xcc-8004.2868.1 0.35 -1.2
2,783,805 + Xcc-8004.2868.1 0.51 -1.1
2,783,805 + Xcc-8004.2868.1 0.51 +0.7
2,783,884 - Xcc-8004.2868.1 0.54 +1.9
2,783,990 - Xcc-8004.2868.1 0.58 +0.5
2,784,081 + Xcc-8004.2868.1 0.61 -1.1
2,784,599 + Xcc-8004.2868.1 0.79 +0.0
2,785,675 - Xcc-8004.2869.1 0.11 -0.8
2,785,680 + Xcc-8004.2869.1 0.11 -1.9
2,785,680 + Xcc-8004.2869.1 0.11 -2.1
2,785,716 + Xcc-8004.2869.1 0.13 -0.4
2,785,780 - Xcc-8004.2869.1 0.16 +1.5
2,785,842 + Xcc-8004.2869.1 0.18 +1.3
2,785,935 + Xcc-8004.2869.1 0.22 +0.9

Or see this region's nucleotide sequence