Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2817.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2816.1 and Xcc-8004.2817.1 overlap by 4 nucleotidesXcc-8004.2817.1 and Xcc-8004.2818.1 overlap by 4 nucleotidesXcc-8004.2818.1 and Xcc-8004.2819.1 are separated by 1 nucleotides Xcc-8004.2816.1: Xcc-8004.2816.1 - Flagellar motor switch protein FliM, at 2,728,700 to 2,729,713 Xcc-8004.2816.1 Xcc-8004.2817.1: Xcc-8004.2817.1 - Flagellar motor switch protein FliN, at 2,729,710 to 2,730,048 Xcc-8004.2817.1 Xcc-8004.2818.1: Xcc-8004.2818.1 - Flagellar biosynthesis protein FliQ, at 2,730,045 to 2,730,452 Xcc-8004.2818.1 Xcc-8004.2819.1: Xcc-8004.2819.1 - Flagellar biosynthesis protein FliP, at 2,730,454 to 2,731,296 Xcc-8004.2819.1 Position (kb) 2729 2730 2731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2728.811 kb on + strand, within Xcc-8004.2816.1at 2728.811 kb on + strand, within Xcc-8004.2816.1at 2728.811 kb on + strand, within Xcc-8004.2816.1at 2728.811 kb on + strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.812 kb on - strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.973 kb on + strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.974 kb on - strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.988 kb on + strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2728.989 kb on - strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.234 kb on + strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.235 kb on - strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.288 kb on + strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.289 kb on - strand, within Xcc-8004.2816.1at 2729.359 kb on - strand, within Xcc-8004.2816.1at 2729.602 kb on + strand, within Xcc-8004.2816.1at 2729.655 kb on + strandat 2729.655 kb on + strandat 2729.656 kb on - strandat 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.935 kb on + strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2729.936 kb on - strand, within Xcc-8004.2817.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.901 kb on + strand, within Xcc-8004.2819.1at 2730.902 kb on - strand, within Xcc-8004.2819.1at 2730.902 kb on - strand, within Xcc-8004.2819.1at 2730.902 kb on - strand, within Xcc-8004.2819.1at 2730.902 kb on - strand, within Xcc-8004.2819.1at 2730.909 kb on + strand, within Xcc-8004.2819.1at 2730.909 kb on + strand, within Xcc-8004.2819.1at 2730.910 kb on - strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.030 kb on + strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1at 2731.031 kb on - strand, within Xcc-8004.2819.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,728,811 + Xcc-8004.2816.1 0.11 +0.3
2,728,811 + Xcc-8004.2816.1 0.11 +0.6
2,728,811 + Xcc-8004.2816.1 0.11 +0.8
2,728,811 + Xcc-8004.2816.1 0.11 -2.0
2,728,812 - Xcc-8004.2816.1 0.11 +1.5
2,728,812 - Xcc-8004.2816.1 0.11 -1.7
2,728,812 - Xcc-8004.2816.1 0.11 +0.2
2,728,812 - Xcc-8004.2816.1 0.11 -0.3
2,728,812 - Xcc-8004.2816.1 0.11 -0.5
2,728,812 - Xcc-8004.2816.1 0.11 -0.5
2,728,973 + Xcc-8004.2816.1 0.27 -0.5
2,728,973 + Xcc-8004.2816.1 0.27 +0.3
2,728,973 + Xcc-8004.2816.1 0.27 -0.4
2,728,973 + Xcc-8004.2816.1 0.27 -3.8
2,728,973 + Xcc-8004.2816.1 0.27 -1.7
2,728,973 + Xcc-8004.2816.1 0.27 -2.2
2,728,973 + Xcc-8004.2816.1 0.27 +1.6
2,728,973 + Xcc-8004.2816.1 0.27 +3.6
2,728,973 + Xcc-8004.2816.1 0.27 -0.3
2,728,973 + Xcc-8004.2816.1 0.27 -1.1
2,728,973 + Xcc-8004.2816.1 0.27 +1.0
2,728,974 - Xcc-8004.2816.1 0.27 -0.8
2,728,974 - Xcc-8004.2816.1 0.27 -1.5
2,728,974 - Xcc-8004.2816.1 0.27 +0.6
2,728,974 - Xcc-8004.2816.1 0.27 -1.3
2,728,974 - Xcc-8004.2816.1 0.27 -0.3
2,728,974 - Xcc-8004.2816.1 0.27 -0.5
2,728,974 - Xcc-8004.2816.1 0.27 -0.2
2,728,974 - Xcc-8004.2816.1 0.27 -2.6
2,728,974 - Xcc-8004.2816.1 0.27 +0.5
2,728,974 - Xcc-8004.2816.1 0.27 -0.4
2,728,974 - Xcc-8004.2816.1 0.27 -1.5
2,728,974 - Xcc-8004.2816.1 0.27 -1.0
2,728,974 - Xcc-8004.2816.1 0.27 -1.0
2,728,974 - Xcc-8004.2816.1 0.27 +2.9
2,728,974 - Xcc-8004.2816.1 0.27 +0.6
2,728,974 - Xcc-8004.2816.1 0.27 +1.8
2,728,988 + Xcc-8004.2816.1 0.28 +1.3
2,728,988 + Xcc-8004.2816.1 0.28 +2.0
2,728,988 + Xcc-8004.2816.1 0.28 +0.9
2,728,988 + Xcc-8004.2816.1 0.28 +0.5
2,728,988 + Xcc-8004.2816.1 0.28 +3.2
2,728,988 + Xcc-8004.2816.1 0.28 +0.2
2,728,988 + Xcc-8004.2816.1 0.28 -1.9
2,728,988 + Xcc-8004.2816.1 0.28 -0.3
2,728,988 + Xcc-8004.2816.1 0.28 -0.8
2,728,988 + Xcc-8004.2816.1 0.28 +2.7
2,728,988 + Xcc-8004.2816.1 0.28 -0.0
2,728,989 - Xcc-8004.2816.1 0.29 +1.5
2,728,989 - Xcc-8004.2816.1 0.29 +0.8
2,728,989 - Xcc-8004.2816.1 0.29 -0.5
2,728,989 - Xcc-8004.2816.1 0.29 +0.9
2,728,989 - Xcc-8004.2816.1 0.29 -2.6
2,728,989 - Xcc-8004.2816.1 0.29 -1.7
2,728,989 - Xcc-8004.2816.1 0.29 +0.5
2,728,989 - Xcc-8004.2816.1 0.29 -0.9
2,728,989 - Xcc-8004.2816.1 0.29 -1.4
2,728,989 - Xcc-8004.2816.1 0.29 +1.4
2,728,989 - Xcc-8004.2816.1 0.29 -0.3
2,728,989 - Xcc-8004.2816.1 0.29 -1.5
2,728,989 - Xcc-8004.2816.1 0.29 -1.0
2,728,989 - Xcc-8004.2816.1 0.29 -0.9
2,728,989 - Xcc-8004.2816.1 0.29 +2.0
2,729,234 + Xcc-8004.2816.1 0.53 +0.1
2,729,234 + Xcc-8004.2816.1 0.53 +1.0
2,729,234 + Xcc-8004.2816.1 0.53 +3.1
2,729,234 + Xcc-8004.2816.1 0.53 +1.0
2,729,234 + Xcc-8004.2816.1 0.53 +0.6
2,729,234 + Xcc-8004.2816.1 0.53 -0.8
2,729,234 + Xcc-8004.2816.1 0.53 +0.5
2,729,234 + Xcc-8004.2816.1 0.53 +0.1
2,729,235 - Xcc-8004.2816.1 0.53 -0.7
2,729,235 - Xcc-8004.2816.1 0.53 -2.3
2,729,235 - Xcc-8004.2816.1 0.53 +0.0
2,729,235 - Xcc-8004.2816.1 0.53 -0.2
2,729,235 - Xcc-8004.2816.1 0.53 +2.0
2,729,235 - Xcc-8004.2816.1 0.53 +0.7
2,729,235 - Xcc-8004.2816.1 0.53 +1.8
2,729,235 - Xcc-8004.2816.1 0.53 -1.7
2,729,288 + Xcc-8004.2816.1 0.58 +0.5
2,729,288 + Xcc-8004.2816.1 0.58 -1.1
2,729,288 + Xcc-8004.2816.1 0.58 +1.0
2,729,288 + Xcc-8004.2816.1 0.58 -1.4
2,729,288 + Xcc-8004.2816.1 0.58 -2.0
2,729,288 + Xcc-8004.2816.1 0.58 -0.2
2,729,288 + Xcc-8004.2816.1 0.58 +0.6
2,729,289 - Xcc-8004.2816.1 0.58 -1.5
2,729,289 - Xcc-8004.2816.1 0.58 +0.2
2,729,289 - Xcc-8004.2816.1 0.58 -0.5
2,729,289 - Xcc-8004.2816.1 0.58 -1.2
2,729,289 - Xcc-8004.2816.1 0.58 +0.1
2,729,289 - Xcc-8004.2816.1 0.58 +0.9
2,729,289 - Xcc-8004.2816.1 0.58 +0.5
2,729,289 - Xcc-8004.2816.1 0.58 -2.8
2,729,289 - Xcc-8004.2816.1 0.58 -0.3
2,729,289 - Xcc-8004.2816.1 0.58 +0.0
2,729,289 - Xcc-8004.2816.1 0.58 +0.8
2,729,289 - Xcc-8004.2816.1 0.58 -0.7
2,729,359 - Xcc-8004.2816.1 0.65 -1.0
2,729,602 + Xcc-8004.2816.1 0.89 -0.6
2,729,655 + +0.5
2,729,655 + +0.0
2,729,656 - -0.7
2,729,935 + Xcc-8004.2817.1 0.66 +2.0
2,729,935 + Xcc-8004.2817.1 0.66 +0.5
2,729,935 + Xcc-8004.2817.1 0.66 -1.3
2,729,935 + Xcc-8004.2817.1 0.66 -1.1
2,729,935 + Xcc-8004.2817.1 0.66 +2.0
2,729,935 + Xcc-8004.2817.1 0.66 -0.8
2,729,935 + Xcc-8004.2817.1 0.66 +1.0
2,729,935 + Xcc-8004.2817.1 0.66 +1.7
2,729,935 + Xcc-8004.2817.1 0.66 -1.0
2,729,935 + Xcc-8004.2817.1 0.66 -1.5
2,729,935 + Xcc-8004.2817.1 0.66 -0.2
2,729,935 + Xcc-8004.2817.1 0.66 +0.0
2,729,935 + Xcc-8004.2817.1 0.66 -0.4
2,729,935 + Xcc-8004.2817.1 0.66 +0.5
2,729,935 + Xcc-8004.2817.1 0.66 -0.6
2,729,936 - Xcc-8004.2817.1 0.67 -0.3
2,729,936 - Xcc-8004.2817.1 0.67 -1.5
2,729,936 - Xcc-8004.2817.1 0.67 -0.5
2,729,936 - Xcc-8004.2817.1 0.67 +0.3
2,729,936 - Xcc-8004.2817.1 0.67 +1.4
2,729,936 - Xcc-8004.2817.1 0.67 -2.2
2,729,936 - Xcc-8004.2817.1 0.67 +0.2
2,729,936 - Xcc-8004.2817.1 0.67 +1.0
2,729,936 - Xcc-8004.2817.1 0.67 -1.9
2,729,936 - Xcc-8004.2817.1 0.67 +0.6
2,729,936 - Xcc-8004.2817.1 0.67 -0.4
2,729,936 - Xcc-8004.2817.1 0.67 +0.3
2,730,901 + Xcc-8004.2819.1 0.53 +2.0
2,730,901 + Xcc-8004.2819.1 0.53 -0.4
2,730,901 + Xcc-8004.2819.1 0.53 -0.5
2,730,901 + Xcc-8004.2819.1 0.53 +0.9
2,730,901 + Xcc-8004.2819.1 0.53 -1.8
2,730,901 + Xcc-8004.2819.1 0.53 +0.7
2,730,902 - Xcc-8004.2819.1 0.53 +1.5
2,730,902 - Xcc-8004.2819.1 0.53 -3.2
2,730,902 - Xcc-8004.2819.1 0.53 -0.4
2,730,902 - Xcc-8004.2819.1 0.53 +0.2
2,730,909 + Xcc-8004.2819.1 0.54 +0.6
2,730,909 + Xcc-8004.2819.1 0.54 -1.2
2,730,910 - Xcc-8004.2819.1 0.54 -2.1
2,731,030 + Xcc-8004.2819.1 0.68 +1.0
2,731,030 + Xcc-8004.2819.1 0.68 -1.7
2,731,030 + Xcc-8004.2819.1 0.68 -0.3
2,731,030 + Xcc-8004.2819.1 0.68 -0.3
2,731,030 + Xcc-8004.2819.1 0.68 +0.2
2,731,030 + Xcc-8004.2819.1 0.68 -1.7
2,731,031 - Xcc-8004.2819.1 0.68 -1.8
2,731,031 - Xcc-8004.2819.1 0.68 +3.0
2,731,031 - Xcc-8004.2819.1 0.68 -2.3
2,731,031 - Xcc-8004.2819.1 0.68 +1.3
2,731,031 - Xcc-8004.2819.1 0.68 +0.5
2,731,031 - Xcc-8004.2819.1 0.68 +0.2
2,731,031 - Xcc-8004.2819.1 0.68 +0.0

Or see this region's nucleotide sequence