Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.259.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.257.1 and Xcc-8004.259.1 overlap by 4 nucleotidesXcc-8004.259.1 and Xcc-8004.260.1 are separated by 85 nucleotides Xcc-8004.257.1: Xcc-8004.257.1 - lactoylglutathione lyase, at 251,547 to 251,984 Xcc-8004.257.1 Xcc-8004.259.1: Xcc-8004.259.1 - FIG01209938: hypothetical protein, at 251,981 to 252,883 Xcc-8004.259.1 Xcc-8004.260.1: Xcc-8004.260.1 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 252,969 to 254,249 Xcc-8004.260.1 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 251.062 kb on - strandat 251.062 kb on - strandat 251.062 kb on - strandat 251.062 kb on - strandat 251.245 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.268 kb on + strandat 251.276 kb on + strandat 251.276 kb on + strandat 251.356 kb on + strandat 251.356 kb on + strandat 251.357 kb on - strandat 251.416 kb on - strandat 251.537 kb on + strandat 251.538 kb on - strandat 251.538 kb on - strandat 251.551 kb on + strandat 251.551 kb on + strandat 251.552 kb on - strandat 251.552 kb on - strandat 251.555 kb on + strandat 251.611 kb on + strand, within Xcc-8004.257.1at 251.611 kb on + strand, within Xcc-8004.257.1at 251.612 kb on - strand, within Xcc-8004.257.1at 251.612 kb on - strand, within Xcc-8004.257.1at 251.612 kb on - strand, within Xcc-8004.257.1at 251.612 kb on - strand, within Xcc-8004.257.1at 251.612 kb on - strand, within Xcc-8004.257.1at 251.722 kb on + strand, within Xcc-8004.257.1at 251.836 kb on + strand, within Xcc-8004.257.1at 251.836 kb on + strand, within Xcc-8004.257.1at 251.890 kb on + strand, within Xcc-8004.257.1at 251.890 kb on + strand, within Xcc-8004.257.1at 251.891 kb on - strand, within Xcc-8004.257.1at 251.891 kb on - strand, within Xcc-8004.257.1at 251.891 kb on - strand, within Xcc-8004.257.1at 251.891 kb on - strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.923 kb on + strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.924 kb on - strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.925 kb on + strand, within Xcc-8004.257.1at 251.926 kb on - strand, within Xcc-8004.257.1at 251.926 kb on - strand, within Xcc-8004.257.1at 252.030 kb on + strandat 252.030 kb on + strandat 252.030 kb on + strandat 252.030 kb on + strandat 252.030 kb on + strandat 252.030 kb on + strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.031 kb on - strandat 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.090 kb on + strand, within Xcc-8004.259.1at 252.091 kb on - strand, within Xcc-8004.259.1at 252.091 kb on - strand, within Xcc-8004.259.1at 252.091 kb on - strand, within Xcc-8004.259.1at 252.091 kb on - strand, within Xcc-8004.259.1at 252.099 kb on + strand, within Xcc-8004.259.1at 252.099 kb on + strand, within Xcc-8004.259.1at 252.099 kb on + strand, within Xcc-8004.259.1at 252.099 kb on + strand, within Xcc-8004.259.1at 252.099 kb on + strand, within Xcc-8004.259.1at 252.100 kb on - strand, within Xcc-8004.259.1at 252.100 kb on - strand, within Xcc-8004.259.1at 252.141 kb on + strand, within Xcc-8004.259.1at 252.142 kb on - strand, within Xcc-8004.259.1at 252.198 kb on + strand, within Xcc-8004.259.1at 252.199 kb on - strand, within Xcc-8004.259.1at 252.199 kb on - strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.303 kb on + strand, within Xcc-8004.259.1at 252.304 kb on - strand, within Xcc-8004.259.1at 252.304 kb on - strand, within Xcc-8004.259.1at 252.304 kb on - strand, within Xcc-8004.259.1at 252.304 kb on - strand, within Xcc-8004.259.1at 252.345 kb on + strand, within Xcc-8004.259.1at 252.346 kb on - strand, within Xcc-8004.259.1at 252.346 kb on - strand, within Xcc-8004.259.1at 252.859 kb on + strandat 252.860 kb on - strandat 252.860 kb on - strandat 252.860 kb on - strandat 252.860 kb on - strandat 252.898 kb on + strandat 252.898 kb on + strandat 252.898 kb on + strandat 252.898 kb on + strandat 252.898 kb on + strandat 252.899 kb on - strandat 252.899 kb on - strandat 252.899 kb on - strandat 252.899 kb on - strandat 252.912 kb on + strandat 252.912 kb on + strandat 252.913 kb on - strandat 252.913 kb on - strandat 252.913 kb on - strandat 253.010 kb on + strandat 253.011 kb on - strandat 253.011 kb on - strandat 253.011 kb on - strandat 253.039 kb on - strandat 253.350 kb on + strand, within Xcc-8004.260.1at 253.350 kb on + strand, within Xcc-8004.260.1at 253.596 kb on + strand, within Xcc-8004.260.1at 253.597 kb on - strand, within Xcc-8004.260.1at 253.833 kb on + strand, within Xcc-8004.260.1at 253.833 kb on + strand, within Xcc-8004.260.1at 253.833 kb on + strand, within Xcc-8004.260.1at 253.833 kb on + strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1at 253.834 kb on - strand, within Xcc-8004.260.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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251,062 - -0.5
251,062 - +0.1
251,062 - -1.4
251,062 - +1.4
251,245 + +1.5
251,268 + -0.4
251,268 + -0.9
251,268 + -1.1
251,268 + -0.6
251,268 + -2.0
251,268 + -2.1
251,268 + +1.1
251,276 + +0.6
251,276 + -0.1
251,356 + -0.6
251,356 + +0.2
251,357 - -0.1
251,416 - -1.4
251,537 + +2.4
251,538 - +0.2
251,538 - +0.8
251,551 + -0.6
251,551 + -0.6
251,552 - -2.3
251,552 - -0.5
251,555 + -2.8
251,611 + Xcc-8004.257.1 0.15 -0.6
251,611 + Xcc-8004.257.1 0.15 -0.6
251,612 - Xcc-8004.257.1 0.15 -0.0
251,612 - Xcc-8004.257.1 0.15 +1.6
251,612 - Xcc-8004.257.1 0.15 -2.2
251,612 - Xcc-8004.257.1 0.15 -1.2
251,612 - Xcc-8004.257.1 0.15 +1.4
251,722 + Xcc-8004.257.1 0.40 -1.0
251,836 + Xcc-8004.257.1 0.66 -0.2
251,836 + Xcc-8004.257.1 0.66 +0.1
251,890 + Xcc-8004.257.1 0.78 -1.2
251,890 + Xcc-8004.257.1 0.78 -0.1
251,891 - Xcc-8004.257.1 0.79 +0.5
251,891 - Xcc-8004.257.1 0.79 -2.1
251,891 - Xcc-8004.257.1 0.79 +0.7
251,891 - Xcc-8004.257.1 0.79 +0.5
251,923 + Xcc-8004.257.1 0.86 -1.4
251,923 + Xcc-8004.257.1 0.86 +0.6
251,923 + Xcc-8004.257.1 0.86 +1.5
251,923 + Xcc-8004.257.1 0.86 -0.6
251,923 + Xcc-8004.257.1 0.86 +0.4
251,923 + Xcc-8004.257.1 0.86 +0.2
251,923 + Xcc-8004.257.1 0.86 -1.3
251,923 + Xcc-8004.257.1 0.86 -1.7
251,923 + Xcc-8004.257.1 0.86 +2.2
251,923 + Xcc-8004.257.1 0.86 +0.8
251,923 + Xcc-8004.257.1 0.86 +0.4
251,924 - Xcc-8004.257.1 0.86 -0.9
251,924 - Xcc-8004.257.1 0.86 +2.8
251,924 - Xcc-8004.257.1 0.86 +0.7
251,924 - Xcc-8004.257.1 0.86 -1.4
251,924 - Xcc-8004.257.1 0.86 -0.9
251,924 - Xcc-8004.257.1 0.86 +0.8
251,924 - Xcc-8004.257.1 0.86 +0.8
251,924 - Xcc-8004.257.1 0.86 -0.6
251,924 - Xcc-8004.257.1 0.86 -1.0
251,924 - Xcc-8004.257.1 0.86 -0.5
251,924 - Xcc-8004.257.1 0.86 +2.4
251,925 + Xcc-8004.257.1 0.86 -1.3
251,925 + Xcc-8004.257.1 0.86 +0.4
251,925 + Xcc-8004.257.1 0.86 +0.4
251,925 + Xcc-8004.257.1 0.86 +1.8
251,925 + Xcc-8004.257.1 0.86 +0.4
251,925 + Xcc-8004.257.1 0.86 +1.7
251,926 - Xcc-8004.257.1 0.87 +1.0
251,926 - Xcc-8004.257.1 0.87 -2.6
252,030 + +0.5
252,030 + -1.1
252,030 + +0.1
252,030 + -1.0
252,030 + -1.6
252,030 + -0.0
252,031 - +0.8
252,031 - -0.4
252,031 - +1.4
252,031 - -1.4
252,031 - -0.2
252,031 - -3.4
252,031 - -1.9
252,090 + Xcc-8004.259.1 0.12 -0.1
252,090 + Xcc-8004.259.1 0.12 -1.3
252,090 + Xcc-8004.259.1 0.12 +1.4
252,090 + Xcc-8004.259.1 0.12 -0.2
252,090 + Xcc-8004.259.1 0.12 -2.2
252,090 + Xcc-8004.259.1 0.12 -2.7
252,090 + Xcc-8004.259.1 0.12 -0.2
252,091 - Xcc-8004.259.1 0.12 +2.1
252,091 - Xcc-8004.259.1 0.12 -1.3
252,091 - Xcc-8004.259.1 0.12 -0.6
252,091 - Xcc-8004.259.1 0.12 -1.3
252,099 + Xcc-8004.259.1 0.13 +2.4
252,099 + Xcc-8004.259.1 0.13 -2.6
252,099 + Xcc-8004.259.1 0.13 -0.2
252,099 + Xcc-8004.259.1 0.13 +0.8
252,099 + Xcc-8004.259.1 0.13 -1.2
252,100 - Xcc-8004.259.1 0.13 -0.6
252,100 - Xcc-8004.259.1 0.13 -1.0
252,141 + Xcc-8004.259.1 0.18 -0.1
252,142 - Xcc-8004.259.1 0.18 +0.6
252,198 + Xcc-8004.259.1 0.24 -1.6
252,199 - Xcc-8004.259.1 0.24 -0.6
252,199 - Xcc-8004.259.1 0.24 -2.7
252,303 + Xcc-8004.259.1 0.36 -0.4
252,303 + Xcc-8004.259.1 0.36 +0.1
252,303 + Xcc-8004.259.1 0.36 -1.1
252,303 + Xcc-8004.259.1 0.36 -2.5
252,303 + Xcc-8004.259.1 0.36 -0.6
252,303 + Xcc-8004.259.1 0.36 +2.4
252,304 - Xcc-8004.259.1 0.36 +0.1
252,304 - Xcc-8004.259.1 0.36 +0.4
252,304 - Xcc-8004.259.1 0.36 -1.7
252,304 - Xcc-8004.259.1 0.36 -0.4
252,345 + Xcc-8004.259.1 0.40 +0.1
252,346 - Xcc-8004.259.1 0.40 -1.9
252,346 - Xcc-8004.259.1 0.40 +1.1
252,859 + -0.8
252,860 - +0.6
252,860 - +0.5
252,860 - +2.1
252,860 - +0.6
252,898 + +0.6
252,898 + -2.4
252,898 + +0.9
252,898 + +0.7
252,898 + +0.9
252,899 - -0.4
252,899 - +2.2
252,899 - -1.1
252,899 - -1.9
252,912 + -0.6
252,912 + -0.8
252,913 - -1.3
252,913 - -1.9
252,913 - +0.7
253,010 + -0.5
253,011 - -0.4
253,011 - +1.7
253,011 - +1.4
253,039 - -1.9
253,350 + Xcc-8004.260.1 0.30 +0.7
253,350 + Xcc-8004.260.1 0.30 +0.5
253,596 + Xcc-8004.260.1 0.49 +0.8
253,597 - Xcc-8004.260.1 0.49 +1.9
253,833 + Xcc-8004.260.1 0.67 -2.4
253,833 + Xcc-8004.260.1 0.67 -1.9
253,833 + Xcc-8004.260.1 0.67 -1.6
253,833 + Xcc-8004.260.1 0.67 -1.0
253,834 - Xcc-8004.260.1 0.68 +2.4
253,834 - Xcc-8004.260.1 0.68 -0.9
253,834 - Xcc-8004.260.1 0.68 -2.1
253,834 - Xcc-8004.260.1 0.68 -1.4
253,834 - Xcc-8004.260.1 0.68 -0.8
253,834 - Xcc-8004.260.1 0.68 -0.8
253,834 - Xcc-8004.260.1 0.68 -0.4
253,834 - Xcc-8004.260.1 0.68 +2.4

Or see this region's nucleotide sequence