Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2385.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,325,746	-		Xcc-8004.2384.1	0.17	+0.1
2,325,914	+		Xcc-8004.2384.1	0.31	-0.3
2,325,914	+		Xcc-8004.2384.1	0.31	-0.4
2,325,914	+		Xcc-8004.2384.1	0.31	-0.0
2,325,914	+		Xcc-8004.2384.1	0.31	+0.2
2,325,914	+		Xcc-8004.2384.1	0.31	-2.2
2,325,914	+		Xcc-8004.2384.1	0.31	+0.0
2,325,914	+		Xcc-8004.2384.1	0.31	+1.5
2,325,914	+		Xcc-8004.2384.1	0.31	-0.3
2,325,915	-		Xcc-8004.2384.1	0.31	-3.1
2,325,915	-		Xcc-8004.2384.1	0.31	-0.3
2,325,915	-		Xcc-8004.2384.1	0.31	-2.1
2,325,915	-		Xcc-8004.2384.1	0.31	-2.6
2,325,915	-		Xcc-8004.2384.1	0.31	-0.7
2,325,915	-		Xcc-8004.2384.1	0.31	-0.3
2,325,915	-		Xcc-8004.2384.1	0.31	-1.2
2,326,016	+		Xcc-8004.2384.1	0.39	+0.3
2,326,016	+		Xcc-8004.2384.1	0.39	+2.1
2,326,016	+		Xcc-8004.2384.1	0.39	-1.0
2,326,016	+		Xcc-8004.2384.1	0.39	-0.6
2,326,016	+		Xcc-8004.2384.1	0.39	+2.1
2,326,017	-		Xcc-8004.2384.1	0.40	-0.6
2,326,017	-		Xcc-8004.2384.1	0.40	-2.5
2,326,017	-		Xcc-8004.2384.1	0.40	-2.0
2,326,017	-		Xcc-8004.2384.1	0.40	-1.0
2,326,017	-		Xcc-8004.2384.1	0.40	-1.6
2,326,017	-		Xcc-8004.2384.1	0.40	-0.1
2,326,017	-		Xcc-8004.2384.1	0.40	-1.6
2,326,064	+		Xcc-8004.2384.1	0.44	-2.3
2,326,065	-		Xcc-8004.2384.1	0.44	-1.8
2,326,065	-		Xcc-8004.2384.1	0.44	-1.9
2,326,134	-		Xcc-8004.2384.1	0.49	-1.8
2,326,148	-		Xcc-8004.2384.1	0.51	-2.2
2,326,184	+		Xcc-8004.2384.1	0.54	-2.1
2,326,184	+		Xcc-8004.2384.1	0.54	-2.4
2,326,185	-		Xcc-8004.2384.1	0.54	-1.9
2,326,304	+		Xcc-8004.2384.1	0.64	-0.3
2,326,305	-		Xcc-8004.2384.1	0.64	-1.0
2,326,305	-		Xcc-8004.2384.1	0.64	-1.3
2,326,305	-		Xcc-8004.2384.1	0.64	-0.7
2,326,475	+		Xcc-8004.2384.1	0.78	+0.1
2,326,475	+		Xcc-8004.2384.1	0.78	+2.3
2,326,476	-		Xcc-8004.2384.1	0.78	+1.4
2,326,476	-		Xcc-8004.2384.1	0.78	-0.7
2,326,509	+		Xcc-8004.2384.1	0.81	-0.4
2,326,622	+				+1.1
2,326,622	+				-2.8
2,326,623	-				-3.6
2,326,623	-				-1.0
2,326,623	-				-2.1
2,326,623	-				-0.1
2,326,623	-				-0.9
2,326,623	-				-1.9
2,326,623	-				-4.5
2,326,623	-				+0.6
2,326,715	+				-0.0
2,326,715	+				+1.6
2,326,716	-				-0.0
2,326,716	-				+2.2
2,326,716	-				+2.4
2,326,716	-				-1.5
2,326,716	-				+0.9
2,326,716	-				-1.8
2,326,727	+				-1.8
2,326,727	+				-0.3
2,326,727	+				-1.3
2,326,728	-				+4.7
2,326,728	-				+2.2
2,326,757	+				-1.0
2,326,757	+				-0.2
2,326,757	+				-1.5
2,326,757	+				-2.9
2,326,757	+				+0.6
2,326,757	+				-1.0
2,326,757	+				-1.2
2,326,758	-				-2.8
2,326,758	-				-2.7
2,326,758	-				-3.5
2,326,758	-				-3.8
2,326,758	-				-3.7
2,326,758	-				-1.9
2,326,758	-				-1.1
2,326,758	-				-1.4
2,326,758	-				+2.2
2,326,763	+				-3.5
2,326,763	+				-2.8
2,326,763	+				-2.2
2,326,763	+				-2.2
2,326,763	+				-3.0
2,326,763	+				-3.1
2,326,763	+				-2.2
2,326,763	+				-2.0
2,326,763	+				-3.6
2,326,764	-				-1.2
2,326,764	-				-1.0
2,326,764	-				+0.2
2,326,764	-				-2.5
2,326,764	-				-0.2
2,326,764	-				+0.6
2,326,764	-				-0.2
2,326,764	-				-0.7
2,326,764	-				+0.2
2,326,764	-				-3.1
2,326,764	-				-1.8
2,326,802	-				-1.1
2,326,802	-				+2.2
2,326,802	-				+2.2
2,326,851	+		Xcc-8004.2385.1	0.13	+1.9
2,326,860	+		Xcc-8004.2385.1	0.13	-1.3
2,326,884	+		Xcc-8004.2385.1	0.16	-2.7
2,326,884	+		Xcc-8004.2385.1	0.16	-1.9
2,326,884	+		Xcc-8004.2385.1	0.16	-0.2
2,326,884	+		Xcc-8004.2385.1	0.16	-0.2
2,326,884	+		Xcc-8004.2385.1	0.16	-2.8
2,326,884	+		Xcc-8004.2385.1	0.16	-2.5
2,326,885	-		Xcc-8004.2385.1	0.16	-1.7
2,326,885	-		Xcc-8004.2385.1	0.16	-1.1
2,326,885	-		Xcc-8004.2385.1	0.16	-0.7
2,326,885	-		Xcc-8004.2385.1	0.16	+1.4
2,326,928	+		Xcc-8004.2385.1	0.20	-1.5
2,326,928	+		Xcc-8004.2385.1	0.20	-1.3
2,326,928	+		Xcc-8004.2385.1	0.20	-2.8
2,326,928	+		Xcc-8004.2385.1	0.20	-2.4
2,326,928	+		Xcc-8004.2385.1	0.20	+0.2
2,326,928	+		Xcc-8004.2385.1	0.20	-0.7
2,326,929	-		Xcc-8004.2385.1	0.21	-0.4
2,326,929	-		Xcc-8004.2385.1	0.21	-1.5
2,326,929	-		Xcc-8004.2385.1	0.21	-0.2
2,326,929	-		Xcc-8004.2385.1	0.21	-0.7
2,326,929	-		Xcc-8004.2385.1	0.21	-1.5
2,326,929	-		Xcc-8004.2385.1	0.21	-2.1
2,326,929	-		Xcc-8004.2385.1	0.21	-1.2
2,326,946	+		Xcc-8004.2385.1	0.22	-0.7
2,326,946	+		Xcc-8004.2385.1	0.22	-2.2
2,326,947	-		Xcc-8004.2385.1	0.22	-4.0
2,326,947	-		Xcc-8004.2385.1	0.22	-1.3
2,326,973	+		Xcc-8004.2385.1	0.25	-1.0
2,326,973	+		Xcc-8004.2385.1	0.25	-0.8
2,326,974	-		Xcc-8004.2385.1	0.25	-2.3
2,326,974	-		Xcc-8004.2385.1	0.25	-0.8
2,326,974	-		Xcc-8004.2385.1	0.25	-2.4
2,326,974	-		Xcc-8004.2385.1	0.25	-2.2
2,326,974	-		Xcc-8004.2385.1	0.25	-1.2
2,326,974	-		Xcc-8004.2385.1	0.25	-1.0
2,327,081	+		Xcc-8004.2385.1	0.36	+0.2
2,327,082	-		Xcc-8004.2385.1	0.36	-0.7
2,327,082	-		Xcc-8004.2385.1	0.36	-2.5
2,327,088	+		Xcc-8004.2385.1	0.37	-2.0
2,327,089	-		Xcc-8004.2385.1	0.37	-0.6
2,327,089	-		Xcc-8004.2385.1	0.37	-0.2
2,327,089	-		Xcc-8004.2385.1	0.37	-1.8
2,327,089	-		Xcc-8004.2385.1	0.37	-2.0
2,327,345	-		Xcc-8004.2385.1	0.63	-2.4
2,327,345	-		Xcc-8004.2385.1	0.63	-0.7
2,327,345	-		Xcc-8004.2385.1	0.63	-2.8
2,327,345	-		Xcc-8004.2385.1	0.63	-1.0
2,327,506	+		Xcc-8004.2385.1	0.80	-1.0
2,327,506	+		Xcc-8004.2385.1	0.80	-0.4
2,327,507	-		Xcc-8004.2385.1	0.80	+2.2
2,327,558	-		Xcc-8004.2385.1	0.85	-1.1
2,327,558	-		Xcc-8004.2385.1	0.85	-2.0
2,327,597	+		Xcc-8004.2385.1	0.89	-2.8
2,327,598	-		Xcc-8004.2385.1	0.89	-1.7
2,327,872	+				-1.0
2,327,872	+				-0.8
2,327,873	-				-2.2
2,327,873	-				-4.1
2,327,925	-				+0.2
2,327,925	-				-1.4
2,327,925	-				-2.3
2,327,925	-				-1.5
2,328,020	+		Xcc-8004.2386.1	0.15	-0.4
2,328,020	+		Xcc-8004.2386.1	0.15	-0.2
2,328,020	+		Xcc-8004.2386.1	0.15	-1.2