Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2368.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2366.1 and Xcc-8004.2368.1 overlap by 4 nucleotidesXcc-8004.2368.1 and Xcc-8004.2369.1 overlap by 4 nucleotidesXcc-8004.2369.1 and Xcc-8004.2370.1 overlap by 4 nucleotides Xcc-8004.2366.1: Xcc-8004.2366.1 - Sugar ABC transporter, periplasmic sugar-binding protein USSDB1B, at 2,310,135 to 2,311,481 Xcc-8004.2366.1 Xcc-8004.2368.1: Xcc-8004.2368.1 - N-Acetyl-D-glucosamine ABC transport system, permease protein 1, at 2,311,478 to 2,312,362 Xcc-8004.2368.1 Xcc-8004.2369.1: Xcc-8004.2369.1 - Sugar ABC transporter, sugar permease protein 2 USSDB1D, at 2,312,359 to 2,313,195 Xcc-8004.2369.1 Xcc-8004.2370.1: Xcc-8004.2370.1 - Hypothetical protein USSDB1E, at 2,313,192 to 2,316,356 Xcc-8004.2370.1 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2310.489 kb on + strand, within Xcc-8004.2366.1at 2310.489 kb on + strand, within Xcc-8004.2366.1at 2310.489 kb on + strand, within Xcc-8004.2366.1at 2310.489 kb on + strand, within Xcc-8004.2366.1at 2310.489 kb on + strand, within Xcc-8004.2366.1at 2310.490 kb on - strand, within Xcc-8004.2366.1at 2310.490 kb on - strand, within Xcc-8004.2366.1at 2310.490 kb on - strand, within Xcc-8004.2366.1at 2310.502 kb on + strand, within Xcc-8004.2366.1at 2310.502 kb on + strand, within Xcc-8004.2366.1at 2310.534 kb on + strand, within Xcc-8004.2366.1at 2310.534 kb on + strand, within Xcc-8004.2366.1at 2310.535 kb on - strand, within Xcc-8004.2366.1at 2310.549 kb on + strand, within Xcc-8004.2366.1at 2310.549 kb on + strand, within Xcc-8004.2366.1at 2310.550 kb on - strand, within Xcc-8004.2366.1at 2310.550 kb on - strand, within Xcc-8004.2366.1at 2310.550 kb on - strand, within Xcc-8004.2366.1at 2310.573 kb on + strand, within Xcc-8004.2366.1at 2310.573 kb on + strand, within Xcc-8004.2366.1at 2310.574 kb on - strand, within Xcc-8004.2366.1at 2310.574 kb on - strand, within Xcc-8004.2366.1at 2310.574 kb on - strand, within Xcc-8004.2366.1at 2310.604 kb on - strand, within Xcc-8004.2366.1at 2310.606 kb on - strand, within Xcc-8004.2366.1at 2310.767 kb on + strand, within Xcc-8004.2366.1at 2310.767 kb on + strand, within Xcc-8004.2366.1at 2310.768 kb on - strand, within Xcc-8004.2366.1at 2310.768 kb on - strand, within Xcc-8004.2366.1at 2310.768 kb on - strand, within Xcc-8004.2366.1at 2310.771 kb on + strand, within Xcc-8004.2366.1at 2310.771 kb on + strand, within Xcc-8004.2366.1at 2310.817 kb on - strand, within Xcc-8004.2366.1at 2310.828 kb on + strand, within Xcc-8004.2366.1at 2310.828 kb on + strand, within Xcc-8004.2366.1at 2310.829 kb on - strand, within Xcc-8004.2366.1at 2310.829 kb on - strand, within Xcc-8004.2366.1at 2310.829 kb on - strand, within Xcc-8004.2366.1at 2310.829 kb on - strand, within Xcc-8004.2366.1at 2310.883 kb on - strand, within Xcc-8004.2366.1at 2310.900 kb on + strand, within Xcc-8004.2366.1at 2310.903 kb on + strand, within Xcc-8004.2366.1at 2310.903 kb on + strand, within Xcc-8004.2366.1at 2310.904 kb on - strand, within Xcc-8004.2366.1at 2310.904 kb on - strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.912 kb on + strand, within Xcc-8004.2366.1at 2310.913 kb on - strand, within Xcc-8004.2366.1at 2310.913 kb on - strand, within Xcc-8004.2366.1at 2311.095 kb on + strand, within Xcc-8004.2366.1at 2311.096 kb on - strand, within Xcc-8004.2366.1at 2311.096 kb on - strand, within Xcc-8004.2366.1at 2311.096 kb on - strand, within Xcc-8004.2366.1at 2311.386 kb on + strandat 2311.387 kb on - strandat 2311.601 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.649 kb on + strand, within Xcc-8004.2368.1at 2311.650 kb on - strand, within Xcc-8004.2368.1at 2311.650 kb on - strand, within Xcc-8004.2368.1at 2311.696 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.703 kb on + strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.704 kb on - strand, within Xcc-8004.2368.1at 2311.860 kb on - strand, within Xcc-8004.2368.1at 2311.860 kb on - strand, within Xcc-8004.2368.1at 2311.878 kb on - strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.994 kb on + strand, within Xcc-8004.2368.1at 2311.995 kb on - strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.045 kb on + strand, within Xcc-8004.2368.1at 2312.180 kb on + strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.181 kb on - strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.228 kb on + strand, within Xcc-8004.2368.1at 2312.229 kb on - strand, within Xcc-8004.2368.1at 2312.358 kb on + strandat 2312.358 kb on + strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.359 kb on - strandat 2312.539 kb on + strand, within Xcc-8004.2369.1at 2312.539 kb on + strand, within Xcc-8004.2369.1at 2312.540 kb on - strand, within Xcc-8004.2369.1at 2312.823 kb on + strand, within Xcc-8004.2369.1at 2312.842 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.031 kb on + strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.032 kb on - strand, within Xcc-8004.2369.1at 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.131 kb on + strandat 2313.132 kb on - strandat 2313.132 kb on - strandat 2313.154 kb on + strandat 2313.154 kb on + strandat 2313.157 kb on + strandat 2313.157 kb on + strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strandat 2313.158 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
remove
2,310,489 + Xcc-8004.2366.1 0.26 +1.4
2,310,489 + Xcc-8004.2366.1 0.26 -2.5
2,310,489 + Xcc-8004.2366.1 0.26 +0.9
2,310,489 + Xcc-8004.2366.1 0.26 -0.1
2,310,489 + Xcc-8004.2366.1 0.26 -0.8
2,310,490 - Xcc-8004.2366.1 0.26 +1.6
2,310,490 - Xcc-8004.2366.1 0.26 +0.2
2,310,490 - Xcc-8004.2366.1 0.26 +0.9
2,310,502 + Xcc-8004.2366.1 0.27 -0.7
2,310,502 + Xcc-8004.2366.1 0.27 -1.3
2,310,534 + Xcc-8004.2366.1 0.30 -2.7
2,310,534 + Xcc-8004.2366.1 0.30 +0.9
2,310,535 - Xcc-8004.2366.1 0.30 +0.6
2,310,549 + Xcc-8004.2366.1 0.31 +0.6
2,310,549 + Xcc-8004.2366.1 0.31 -3.0
2,310,550 - Xcc-8004.2366.1 0.31 +2.2
2,310,550 - Xcc-8004.2366.1 0.31 -0.3
2,310,550 - Xcc-8004.2366.1 0.31 -0.2
2,310,573 + Xcc-8004.2366.1 0.33 +0.1
2,310,573 + Xcc-8004.2366.1 0.33 +1.2
2,310,574 - Xcc-8004.2366.1 0.33 -0.1
2,310,574 - Xcc-8004.2366.1 0.33 -0.5
2,310,574 - Xcc-8004.2366.1 0.33 -1.1
2,310,604 - Xcc-8004.2366.1 0.35 +0.8
2,310,606 - Xcc-8004.2366.1 0.35 -0.2
2,310,767 + Xcc-8004.2366.1 0.47 +1.0
2,310,767 + Xcc-8004.2366.1 0.47 -2.5
2,310,768 - Xcc-8004.2366.1 0.47 +0.7
2,310,768 - Xcc-8004.2366.1 0.47 +1.4
2,310,768 - Xcc-8004.2366.1 0.47 +1.2
2,310,771 + Xcc-8004.2366.1 0.47 +0.4
2,310,771 + Xcc-8004.2366.1 0.47 +1.0
2,310,817 - Xcc-8004.2366.1 0.51 -1.3
2,310,828 + Xcc-8004.2366.1 0.51 +0.5
2,310,828 + Xcc-8004.2366.1 0.51 +0.1
2,310,829 - Xcc-8004.2366.1 0.52 -0.2
2,310,829 - Xcc-8004.2366.1 0.52 -2.1
2,310,829 - Xcc-8004.2366.1 0.52 +0.1
2,310,829 - Xcc-8004.2366.1 0.52 -0.7
2,310,883 - Xcc-8004.2366.1 0.56 -0.1
2,310,900 + Xcc-8004.2366.1 0.57 +0.9
2,310,903 + Xcc-8004.2366.1 0.57 +0.7
2,310,903 + Xcc-8004.2366.1 0.57 +1.2
2,310,904 - Xcc-8004.2366.1 0.57 -1.2
2,310,904 - Xcc-8004.2366.1 0.57 -1.7
2,310,912 + Xcc-8004.2366.1 0.58 +0.2
2,310,912 + Xcc-8004.2366.1 0.58 +0.8
2,310,912 + Xcc-8004.2366.1 0.58 -1.8
2,310,912 + Xcc-8004.2366.1 0.58 -2.4
2,310,912 + Xcc-8004.2366.1 0.58 -1.0
2,310,912 + Xcc-8004.2366.1 0.58 -0.8
2,310,912 + Xcc-8004.2366.1 0.58 +3.0
2,310,913 - Xcc-8004.2366.1 0.58 +0.6
2,310,913 - Xcc-8004.2366.1 0.58 +0.2
2,311,095 + Xcc-8004.2366.1 0.71 +0.3
2,311,096 - Xcc-8004.2366.1 0.71 +1.6
2,311,096 - Xcc-8004.2366.1 0.71 +1.3
2,311,096 - Xcc-8004.2366.1 0.71 -2.7
2,311,386 + -2.8
2,311,387 - -0.8
2,311,601 + Xcc-8004.2368.1 0.14 -0.2
2,311,649 + Xcc-8004.2368.1 0.19 -0.1
2,311,649 + Xcc-8004.2368.1 0.19 -0.7
2,311,649 + Xcc-8004.2368.1 0.19 +1.5
2,311,649 + Xcc-8004.2368.1 0.19 -1.8
2,311,649 + Xcc-8004.2368.1 0.19 +1.0
2,311,649 + Xcc-8004.2368.1 0.19 -0.4
2,311,650 - Xcc-8004.2368.1 0.19 -1.9
2,311,650 - Xcc-8004.2368.1 0.19 -0.7
2,311,696 + Xcc-8004.2368.1 0.25 -2.2
2,311,703 + Xcc-8004.2368.1 0.25 +0.7
2,311,703 + Xcc-8004.2368.1 0.25 +0.8
2,311,703 + Xcc-8004.2368.1 0.25 -2.5
2,311,703 + Xcc-8004.2368.1 0.25 -0.6
2,311,703 + Xcc-8004.2368.1 0.25 +0.5
2,311,704 - Xcc-8004.2368.1 0.26 -0.5
2,311,704 - Xcc-8004.2368.1 0.26 -1.1
2,311,704 - Xcc-8004.2368.1 0.26 +1.2
2,311,704 - Xcc-8004.2368.1 0.26 +1.5
2,311,860 - Xcc-8004.2368.1 0.43 -1.0
2,311,860 - Xcc-8004.2368.1 0.43 -2.2
2,311,878 - Xcc-8004.2368.1 0.45 -0.6
2,311,994 + Xcc-8004.2368.1 0.58 +1.2
2,311,994 + Xcc-8004.2368.1 0.58 -1.5
2,311,994 + Xcc-8004.2368.1 0.58 -0.4
2,311,995 - Xcc-8004.2368.1 0.58 -0.8
2,312,045 + Xcc-8004.2368.1 0.64 -1.2
2,312,045 + Xcc-8004.2368.1 0.64 +0.4
2,312,045 + Xcc-8004.2368.1 0.64 -0.8
2,312,180 + Xcc-8004.2368.1 0.79 +0.9
2,312,181 - Xcc-8004.2368.1 0.79 +0.9
2,312,181 - Xcc-8004.2368.1 0.79 -1.4
2,312,181 - Xcc-8004.2368.1 0.79 +0.8
2,312,228 + Xcc-8004.2368.1 0.85 -0.4
2,312,228 + Xcc-8004.2368.1 0.85 -0.2
2,312,228 + Xcc-8004.2368.1 0.85 +2.6
2,312,228 + Xcc-8004.2368.1 0.85 +0.2
2,312,228 + Xcc-8004.2368.1 0.85 +0.6
2,312,228 + Xcc-8004.2368.1 0.85 -0.4
2,312,228 + Xcc-8004.2368.1 0.85 +0.6
2,312,228 + Xcc-8004.2368.1 0.85 -2.0
2,312,229 - Xcc-8004.2368.1 0.85 +0.4
2,312,358 + +0.2
2,312,358 + -1.8
2,312,359 - +0.2
2,312,359 - -0.7
2,312,359 - +0.6
2,312,359 - +0.9
2,312,539 + Xcc-8004.2369.1 0.22 -3.4
2,312,539 + Xcc-8004.2369.1 0.22 -0.4
2,312,540 - Xcc-8004.2369.1 0.22 +2.2
2,312,823 + Xcc-8004.2369.1 0.55 +0.2
2,312,842 + Xcc-8004.2369.1 0.58 -2.3
2,313,031 + Xcc-8004.2369.1 0.80 -0.4
2,313,031 + Xcc-8004.2369.1 0.80 +0.8
2,313,031 + Xcc-8004.2369.1 0.80 -1.4
2,313,031 + Xcc-8004.2369.1 0.80 +1.2
2,313,031 + Xcc-8004.2369.1 0.80 -1.4
2,313,031 + Xcc-8004.2369.1 0.80 -2.1
2,313,031 + Xcc-8004.2369.1 0.80 -1.8
2,313,031 + Xcc-8004.2369.1 0.80 -0.4
2,313,032 - Xcc-8004.2369.1 0.80 -1.4
2,313,032 - Xcc-8004.2369.1 0.80 -2.2
2,313,032 - Xcc-8004.2369.1 0.80 +0.1
2,313,032 - Xcc-8004.2369.1 0.80 -0.4
2,313,032 - Xcc-8004.2369.1 0.80 -1.7
2,313,032 - Xcc-8004.2369.1 0.80 +0.0
2,313,032 - Xcc-8004.2369.1 0.80 +1.5
2,313,131 + +2.2
2,313,131 + -2.5
2,313,131 + -3.1
2,313,131 + -1.4
2,313,131 + +0.2
2,313,131 + +0.7
2,313,132 - -0.2
2,313,132 - +3.6
2,313,154 + -0.4
2,313,154 + -0.1
2,313,157 + -0.7
2,313,157 + -1.1
2,313,158 - -0.3
2,313,158 - +1.8
2,313,158 - +0.6
2,313,158 - -1.3
2,313,158 - -1.4
2,313,158 - -2.7
2,313,158 - -0.7

Or see this region's nucleotide sequence