Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2326.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2323.1 and Xcc-8004.2324.1 overlap by 4 nucleotidesXcc-8004.2324.1 and Xcc-8004.2325.1 overlap by 1 nucleotidesXcc-8004.2325.1 and Xcc-8004.2326.1 are separated by 58 nucleotidesXcc-8004.2326.1 and Xcc-8004.2327.1 are separated by 138 nucleotides Xcc-8004.2323.1: Xcc-8004.2323.1 - Argininosuccinate lyase (EC 4.3.2.1), at 2,270,229 to 2,271,524 Xcc-8004.2323.1 Xcc-8004.2324.1: Xcc-8004.2324.1 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 2,271,521 to 2,271,928 Xcc-8004.2324.1 Xcc-8004.2325.1: Xcc-8004.2325.1 - FIG01209702: hypothetical protein, at 2,271,928 to 2,272,188 Xcc-8004.2325.1 Xcc-8004.2326.1: Xcc-8004.2326.1 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 2,272,247 to 2,273,401 Xcc-8004.2326.1 Xcc-8004.2327.1: Xcc-8004.2327.1 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 2,273,540 to 2,274,784 Xcc-8004.2327.1 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2271.327 kb on + strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.557 kb on + strandat 2271.558 kb on - strandat 2271.558 kb on - strandat 2271.664 kb on + strand, within Xcc-8004.2324.1at 2271.665 kb on - strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.687 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.940 kb on + strandat 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.169 kb on - strandat 2272.626 kb on - strand, within Xcc-8004.2326.1at 2272.979 kb on + strand, within Xcc-8004.2326.1at 2272.980 kb on - strand, within Xcc-8004.2326.1at 2272.980 kb on - strand, within Xcc-8004.2326.1at 2273.084 kb on + strand, within Xcc-8004.2326.1at 2273.084 kb on + strand, within Xcc-8004.2326.1at 2273.084 kb on + strand, within Xcc-8004.2326.1at 2273.175 kb on + strand, within Xcc-8004.2326.1at 2273.285 kb on + strand, within Xcc-8004.2326.1at 2273.352 kb on - strandat 2273.357 kb on + strandat 2273.392 kb on - strandat 2273.443 kb on + strandat 2273.443 kb on + strandat 2273.444 kb on - strandat 2273.444 kb on - strandat 2273.623 kb on - strandat 2273.623 kb on - strandat 2273.790 kb on + strand, within Xcc-8004.2327.1at 2273.897 kb on + strand, within Xcc-8004.2327.1at 2273.897 kb on + strand, within Xcc-8004.2327.1at 2273.897 kb on + strand, within Xcc-8004.2327.1at 2273.897 kb on + strand, within Xcc-8004.2327.1at 2273.898 kb on - strand, within Xcc-8004.2327.1at 2273.898 kb on - strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.203 kb on + strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1at 2274.204 kb on - strand, within Xcc-8004.2327.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,271,327 + Xcc-8004.2323.1 0.85 -2.1
2,271,328 - Xcc-8004.2323.1 0.85 -1.3
2,271,328 - Xcc-8004.2323.1 0.85 -2.0
2,271,328 - Xcc-8004.2323.1 0.85 -2.5
2,271,328 - Xcc-8004.2323.1 0.85 -2.0
2,271,328 - Xcc-8004.2323.1 0.85 -1.8
2,271,384 + Xcc-8004.2323.1 0.89 -3.5
2,271,384 + Xcc-8004.2323.1 0.89 -0.4
2,271,385 - Xcc-8004.2323.1 0.89 -1.7
2,271,385 - Xcc-8004.2323.1 0.89 +0.6
2,271,385 - Xcc-8004.2323.1 0.89 -1.0
2,271,557 + -1.1
2,271,558 - -3.1
2,271,558 - -0.8
2,271,664 + Xcc-8004.2324.1 0.35 -2.4
2,271,665 - Xcc-8004.2324.1 0.35 -3.4
2,271,686 + Xcc-8004.2324.1 0.40 -0.0
2,271,686 + Xcc-8004.2324.1 0.40 +0.6
2,271,686 + Xcc-8004.2324.1 0.40 +0.6
2,271,686 + Xcc-8004.2324.1 0.40 -1.5
2,271,687 - Xcc-8004.2324.1 0.41 -1.1
2,271,854 - Xcc-8004.2324.1 0.82 -0.5
2,271,854 - Xcc-8004.2324.1 0.82 +1.0
2,271,940 + +1.9
2,272,075 + Xcc-8004.2325.1 0.56 -1.1
2,272,075 + Xcc-8004.2325.1 0.56 -1.6
2,272,075 + Xcc-8004.2325.1 0.56 +0.0
2,272,075 + Xcc-8004.2325.1 0.56 -0.3
2,272,076 - Xcc-8004.2325.1 0.57 +0.2
2,272,076 - Xcc-8004.2325.1 0.57 -2.5
2,272,079 + Xcc-8004.2325.1 0.58 +0.6
2,272,079 + Xcc-8004.2325.1 0.58 +1.1
2,272,079 + Xcc-8004.2325.1 0.58 -1.0
2,272,079 + Xcc-8004.2325.1 0.58 -0.8
2,272,079 + Xcc-8004.2325.1 0.58 +0.4
2,272,079 + Xcc-8004.2325.1 0.58 -2.3
2,272,079 + Xcc-8004.2325.1 0.58 -0.1
2,272,080 - Xcc-8004.2325.1 0.58 -2.6
2,272,080 - Xcc-8004.2325.1 0.58 -1.3
2,272,080 - Xcc-8004.2325.1 0.58 -1.0
2,272,080 - Xcc-8004.2325.1 0.58 -2.1
2,272,080 - Xcc-8004.2325.1 0.58 -1.2
2,272,080 - Xcc-8004.2325.1 0.58 +2.9
2,272,168 + +0.9
2,272,168 + -1.0
2,272,168 + +1.1
2,272,168 + +1.8
2,272,168 + +2.0
2,272,169 - -1.0
2,272,626 - Xcc-8004.2326.1 0.33 -3.1
2,272,979 + Xcc-8004.2326.1 0.63 -0.5
2,272,980 - Xcc-8004.2326.1 0.63 -0.3
2,272,980 - Xcc-8004.2326.1 0.63 -2.9
2,273,084 + Xcc-8004.2326.1 0.72 -3.1
2,273,084 + Xcc-8004.2326.1 0.72 -1.6
2,273,084 + Xcc-8004.2326.1 0.72 +1.4
2,273,175 + Xcc-8004.2326.1 0.80 +1.6
2,273,285 + Xcc-8004.2326.1 0.90 -1.5
2,273,352 - -0.3
2,273,357 + -1.1
2,273,392 - -3.0
2,273,443 + +1.4
2,273,443 + -2.6
2,273,444 - +0.4
2,273,444 - +0.2
2,273,623 - -2.3
2,273,623 - -1.5
2,273,790 + Xcc-8004.2327.1 0.20 -1.3
2,273,897 + Xcc-8004.2327.1 0.29 -1.0
2,273,897 + Xcc-8004.2327.1 0.29 -2.5
2,273,897 + Xcc-8004.2327.1 0.29 -0.8
2,273,897 + Xcc-8004.2327.1 0.29 -2.6
2,273,898 - Xcc-8004.2327.1 0.29 +0.2
2,273,898 - Xcc-8004.2327.1 0.29 -0.2
2,274,203 + Xcc-8004.2327.1 0.53 -3.5
2,274,203 + Xcc-8004.2327.1 0.53 -1.4
2,274,203 + Xcc-8004.2327.1 0.53 -2.6
2,274,203 + Xcc-8004.2327.1 0.53 -0.1
2,274,203 + Xcc-8004.2327.1 0.53 -2.5
2,274,203 + Xcc-8004.2327.1 0.53 -0.6
2,274,203 + Xcc-8004.2327.1 0.53 -1.1
2,274,203 + Xcc-8004.2327.1 0.53 -1.0
2,274,203 + Xcc-8004.2327.1 0.53 -1.9
2,274,203 + Xcc-8004.2327.1 0.53 -2.2
2,274,203 + Xcc-8004.2327.1 0.53 -2.3
2,274,203 + Xcc-8004.2327.1 0.53 -1.4
2,274,203 + Xcc-8004.2327.1 0.53 -1.7
2,274,204 - Xcc-8004.2327.1 0.53 -0.4
2,274,204 - Xcc-8004.2327.1 0.53 -2.3
2,274,204 - Xcc-8004.2327.1 0.53 -0.2
2,274,204 - Xcc-8004.2327.1 0.53 -2.5
2,274,204 - Xcc-8004.2327.1 0.53 -0.4
2,274,204 - Xcc-8004.2327.1 0.53 -2.6

Or see this region's nucleotide sequence