Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2316.1 and Xcc-8004.2317.1 overlap by 4 nucleotides Xcc-8004.2317.1 and Xcc-8004.2318.1 are separated by 30 nucleotides Xcc-8004.2318.1 and Xcc-8004.2319.1 are separated by 242 nucleotides
Xcc-8004.2316.1: Xcc-8004.2316.1 - N-acetylornithine carbamoyltransferase (EC 2.1.3.9), at 2,263,144 to 2,264,163
Xcc-8004.2316.1
Xcc-8004.2317.1: Xcc-8004.2317.1 - OsmC/Ohr family protein, at 2,264,160 to 2,264,630
Xcc-8004.2317.1
Xcc-8004.2318.1: Xcc-8004.2318.1 - Argininosuccinate synthase (EC 6.3.4.5), at 2,264,661 to 2,265,854
Xcc-8004.2318.1
Xcc-8004.2319.1: Xcc-8004.2319.1 - Acetylornithine deacetylase (EC 3.5.1.16), at 2,266,097 to 2,267,197
Xcc-8004.2319.1
Position (kb)
2264
2265
2266 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.661 kb on - strand, within Xcc-8004.2316.1 at 2263.678 kb on + strand, within Xcc-8004.2316.1 at 2263.678 kb on + strand, within Xcc-8004.2316.1 at 2263.678 kb on + strand, within Xcc-8004.2316.1 at 2263.678 kb on + strand, within Xcc-8004.2316.1 at 2263.678 kb on + strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.679 kb on - strand, within Xcc-8004.2316.1 at 2263.777 kb on + strand, within Xcc-8004.2316.1 at 2263.777 kb on + strand, within Xcc-8004.2316.1 at 2263.777 kb on + strand, within Xcc-8004.2316.1 at 2263.778 kb on - strand, within Xcc-8004.2316.1 at 2263.778 kb on - strand, within Xcc-8004.2316.1 at 2263.778 kb on - strand, within Xcc-8004.2316.1 at 2263.778 kb on - strand, within Xcc-8004.2316.1 at 2263.795 kb on + strand, within Xcc-8004.2316.1 at 2263.795 kb on + strand, within Xcc-8004.2316.1 at 2263.795 kb on + strand, within Xcc-8004.2316.1 at 2263.795 kb on + strand, within Xcc-8004.2316.1 at 2263.796 kb on - strand, within Xcc-8004.2316.1 at 2263.796 kb on - strand, within Xcc-8004.2316.1 at 2263.796 kb on - strand, within Xcc-8004.2316.1 at 2263.796 kb on - strand, within Xcc-8004.2316.1 at 2263.870 kb on + strand, within Xcc-8004.2316.1 at 2263.871 kb on - strand, within Xcc-8004.2316.1 at 2263.871 kb on - strand, within Xcc-8004.2316.1 at 2263.871 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.892 kb on - strand, within Xcc-8004.2316.1 at 2263.960 kb on + strand, within Xcc-8004.2316.1 at 2263.960 kb on + strand, within Xcc-8004.2316.1 at 2263.961 kb on - strand, within Xcc-8004.2316.1 at 2264.052 kb on + strand, within Xcc-8004.2316.1 at 2264.181 kb on + strand at 2264.182 kb on - strand at 2264.233 kb on - strand, within Xcc-8004.2317.1 at 2264.233 kb on - strand, within Xcc-8004.2317.1 at 2264.241 kb on + strand, within Xcc-8004.2317.1 at 2264.382 kb on + strand, within Xcc-8004.2317.1 at 2264.383 kb on - strand, within Xcc-8004.2317.1 at 2264.676 kb on - strand at 2264.922 kb on + strand, within Xcc-8004.2318.1 at 2264.947 kb on - strand, within Xcc-8004.2318.1 at 2265.072 kb on + strand, within Xcc-8004.2318.1 at 2265.142 kb on - strand, within Xcc-8004.2318.1 at 2265.186 kb on + strand, within Xcc-8004.2318.1 at 2265.186 kb on + strand, within Xcc-8004.2318.1 at 2265.186 kb on + strand, within Xcc-8004.2318.1 at 2265.187 kb on - strand, within Xcc-8004.2318.1 at 2265.187 kb on - strand, within Xcc-8004.2318.1 at 2265.187 kb on - strand, within Xcc-8004.2318.1 at 2265.187 kb on - strand, within Xcc-8004.2318.1 at 2265.288 kb on - strand, within Xcc-8004.2318.1 at 2265.598 kb on - strand, within Xcc-8004.2318.1 at 2265.598 kb on - strand, within Xcc-8004.2318.1 at 2265.609 kb on + strand, within Xcc-8004.2318.1 at 2265.610 kb on - strand, within Xcc-8004.2318.1 at 2265.610 kb on - strand, within Xcc-8004.2318.1 at 2265.759 kb on + strand at 2265.834 kb on + strand at 2265.834 kb on + strand at 2265.835 kb on - strand at 2265.869 kb on + strand at 2265.869 kb on + strand at 2265.870 kb on - strand at 2265.945 kb on + strand at 2265.946 kb on - strand at 2265.946 kb on - strand at 2266.022 kb on + strand at 2266.023 kb on - strand at 2266.023 kb on - strand at 2266.023 kb on - strand at 2266.023 kb on - strand at 2266.108 kb on - strand at 2266.202 kb on + strand at 2266.202 kb on + strand at 2266.203 kb on - strand at 2266.271 kb on + strand, within Xcc-8004.2319.1 at 2266.272 kb on - strand, within Xcc-8004.2319.1 at 2266.272 kb on - strand, within Xcc-8004.2319.1 at 2266.272 kb on - strand, within Xcc-8004.2319.1 at 2266.296 kb on - strand, within Xcc-8004.2319.1 at 2266.539 kb on - strand, within Xcc-8004.2319.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 2,263,661 - Xcc-8004.2316.1 0.51 -1.1 2,263,661 - Xcc-8004.2316.1 0.51 -2.8 2,263,661 - Xcc-8004.2316.1 0.51 -0.8 2,263,661 - Xcc-8004.2316.1 0.51 -1.3 2,263,661 - Xcc-8004.2316.1 0.51 -2.4 2,263,661 - Xcc-8004.2316.1 0.51 -3.1 2,263,661 - Xcc-8004.2316.1 0.51 +1.2 2,263,678 + Xcc-8004.2316.1 0.52 -2.7 2,263,678 + Xcc-8004.2316.1 0.52 -0.6 2,263,678 + Xcc-8004.2316.1 0.52 -1.9 2,263,678 + Xcc-8004.2316.1 0.52 +0.2 2,263,678 + Xcc-8004.2316.1 0.52 -0.1 2,263,679 - Xcc-8004.2316.1 0.52 -0.1 2,263,679 - Xcc-8004.2316.1 0.52 -1.3 2,263,679 - Xcc-8004.2316.1 0.52 -2.3 2,263,679 - Xcc-8004.2316.1 0.52 -2.7 2,263,679 - Xcc-8004.2316.1 0.52 -2.3 2,263,679 - Xcc-8004.2316.1 0.52 -2.3 2,263,679 - Xcc-8004.2316.1 0.52 -3.1 2,263,679 - Xcc-8004.2316.1 0.52 +1.0 2,263,777 + Xcc-8004.2316.1 0.62 -1.1 2,263,777 + Xcc-8004.2316.1 0.62 +0.3 2,263,777 + Xcc-8004.2316.1 0.62 -1.5 2,263,778 - Xcc-8004.2316.1 0.62 -3.5 2,263,778 - Xcc-8004.2316.1 0.62 -1.8 2,263,778 - Xcc-8004.2316.1 0.62 -1.2 2,263,778 - Xcc-8004.2316.1 0.62 -1.9 2,263,795 + Xcc-8004.2316.1 0.64 -3.2 2,263,795 + Xcc-8004.2316.1 0.64 -0.4 2,263,795 + Xcc-8004.2316.1 0.64 -1.7 2,263,795 + Xcc-8004.2316.1 0.64 -3.2 2,263,796 - Xcc-8004.2316.1 0.64 -1.0 2,263,796 - Xcc-8004.2316.1 0.64 -3.0 2,263,796 - Xcc-8004.2316.1 0.64 +0.5 2,263,796 - Xcc-8004.2316.1 0.64 -3.2 2,263,870 + Xcc-8004.2316.1 0.71 -2.4 2,263,871 - Xcc-8004.2316.1 0.71 -1.6 2,263,871 - Xcc-8004.2316.1 0.71 -1.4 2,263,871 - Xcc-8004.2316.1 0.71 -2.2 2,263,892 - Xcc-8004.2316.1 0.73 -1.5 2,263,892 - Xcc-8004.2316.1 0.73 -2.9 2,263,892 - Xcc-8004.2316.1 0.73 +0.2 2,263,892 - Xcc-8004.2316.1 0.73 -0.4 2,263,892 - Xcc-8004.2316.1 0.73 -0.6 2,263,892 - Xcc-8004.2316.1 0.73 -0.6 2,263,960 + Xcc-8004.2316.1 0.80 -3.2 2,263,960 + Xcc-8004.2316.1 0.80 -1.5 2,263,961 - Xcc-8004.2316.1 0.80 -2.8 2,264,052 + Xcc-8004.2316.1 0.89 -1.6 2,264,181 + -0.6 2,264,182 - +2.2 2,264,233 - Xcc-8004.2317.1 0.15 -0.4 2,264,233 - Xcc-8004.2317.1 0.15 +0.1 2,264,241 + Xcc-8004.2317.1 0.17 +1.4 2,264,382 + Xcc-8004.2317.1 0.47 -0.2 2,264,383 - Xcc-8004.2317.1 0.47 -2.7 2,264,676 - -1.2 2,264,922 + Xcc-8004.2318.1 0.22 -4.1 2,264,947 - Xcc-8004.2318.1 0.24 -0.8 2,265,072 + Xcc-8004.2318.1 0.34 -2.4 2,265,142 - Xcc-8004.2318.1 0.40 -2.0 2,265,186 + Xcc-8004.2318.1 0.44 -2.7 2,265,186 + Xcc-8004.2318.1 0.44 -1.6 2,265,186 + Xcc-8004.2318.1 0.44 -0.9 2,265,187 - Xcc-8004.2318.1 0.44 -2.4 2,265,187 - Xcc-8004.2318.1 0.44 -0.1 2,265,187 - Xcc-8004.2318.1 0.44 -3.1 2,265,187 - Xcc-8004.2318.1 0.44 -1.3 2,265,288 - Xcc-8004.2318.1 0.53 +0.2 2,265,598 - Xcc-8004.2318.1 0.78 -2.0 2,265,598 - Xcc-8004.2318.1 0.78 -1.9 2,265,609 + Xcc-8004.2318.1 0.79 -2.1 2,265,610 - Xcc-8004.2318.1 0.79 -1.8 2,265,610 - Xcc-8004.2318.1 0.79 -2.3 2,265,759 + -2.9 2,265,834 + -3.7 2,265,834 + -0.4 2,265,835 - -3.5 2,265,869 + -0.2 2,265,869 + -2.9 2,265,870 - -2.1 2,265,945 + -0.8 2,265,946 - -0.2 2,265,946 - -1.1 2,266,022 + -1.4 2,266,023 - -1.8 2,266,023 - -1.6 2,266,023 - -1.6 2,266,023 - -0.1 2,266,108 - -1.5 2,266,202 + -2.8 2,266,202 + -1.1 2,266,203 - -3.0 2,266,271 + Xcc-8004.2319.1 0.16 -2.3 2,266,272 - Xcc-8004.2319.1 0.16 -0.7 2,266,272 - Xcc-8004.2319.1 0.16 -1.5 2,266,272 - Xcc-8004.2319.1 0.16 -1.0 2,266,296 - Xcc-8004.2319.1 0.18 -2.7 2,266,539 - Xcc-8004.2319.1 0.40 -1.2
Or see this region's nucleotide sequence