Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.220.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.218.1 and Xcc-8004.219.1 are separated by 60 nucleotidesXcc-8004.219.1 and Xcc-8004.220.1 overlap by 4 nucleotidesXcc-8004.220.1 and Xcc-8004.222.1 are separated by 338 nucleotides Xcc-8004.218.1: Xcc-8004.218.1 - FIG01210778: hypothetical protein, at 215,252 to 215,644 Xcc-8004.218.1 Xcc-8004.219.1: Xcc-8004.219.1 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 215,705 to 216,442 Xcc-8004.219.1 Xcc-8004.220.1: Xcc-8004.220.1 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 216,439 to 217,911 Xcc-8004.220.1 Xcc-8004.222.1: Xcc-8004.222.1 - Cysteine desulfurase (EC 2.8.1.7), at 218,250 to 218,906 Xcc-8004.222.1 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 215.441 kb on + strand, within Xcc-8004.218.1at 215.441 kb on + strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.606 kb on + strandat 215.606 kb on + strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 216.031 kb on + strand, within Xcc-8004.219.1at 216.032 kb on - strand, within Xcc-8004.219.1at 216.302 kb on + strand, within Xcc-8004.219.1at 216.303 kb on - strand, within Xcc-8004.219.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.786 kb on + strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.935 kb on - strand, within Xcc-8004.220.1at 216.935 kb on - strand, within Xcc-8004.220.1at 216.979 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.022 kb on - strand, within Xcc-8004.220.1at 217.022 kb on - strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.093 kb on + strand, within Xcc-8004.220.1at 217.094 kb on - strand, within Xcc-8004.220.1at 217.103 kb on + strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.111 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.149 kb on - strand, within Xcc-8004.220.1at 217.532 kb on - strand, within Xcc-8004.220.1at 217.554 kb on + strand, within Xcc-8004.220.1at 217.555 kb on - strand, within Xcc-8004.220.1at 217.889 kb on + strandat 217.925 kb on + strandat 217.926 kb on - strandat 217.926 kb on - strandat 217.984 kb on + strandat 217.984 kb on + strandat 218.085 kb on + strandat 218.148 kb on + strandat 218.148 kb on + strandat 218.148 kb on + strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.219 kb on + strandat 218.219 kb on + strandat 218.219 kb on + strandat 218.220 kb on - strandat 218.220 kb on - strandat 218.220 kb on - strandat 218.304 kb on - strandat 218.407 kb on + strand, within Xcc-8004.222.1at 218.407 kb on + strand, within Xcc-8004.222.1at 218.407 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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215,441 + Xcc-8004.218.1 0.48 +1.1
215,441 + Xcc-8004.218.1 0.48 +1.3
215,442 - Xcc-8004.218.1 0.48 -0.5
215,442 - Xcc-8004.218.1 0.48 +1.2
215,442 - Xcc-8004.218.1 0.48 -1.7
215,442 - Xcc-8004.218.1 0.48 -0.4
215,442 - Xcc-8004.218.1 0.48 +0.6
215,442 - Xcc-8004.218.1 0.48 +1.2
215,442 - Xcc-8004.218.1 0.48 +1.4
215,459 + Xcc-8004.218.1 0.53 +2.9
215,459 + Xcc-8004.218.1 0.53 +1.8
215,459 + Xcc-8004.218.1 0.53 -0.8
215,459 + Xcc-8004.218.1 0.53 +2.4
215,460 - Xcc-8004.218.1 0.53 +2.2
215,460 - Xcc-8004.218.1 0.53 +0.6
215,460 - Xcc-8004.218.1 0.53 -0.1
215,460 - Xcc-8004.218.1 0.53 +1.7
215,460 - Xcc-8004.218.1 0.53 -2.3
215,606 + +0.1
215,606 + -0.1
215,607 - -1.3
215,607 - -2.7
215,607 - +0.3
215,607 - -2.2
215,607 - -0.3
215,939 + Xcc-8004.219.1 0.32 +0.5
215,939 + Xcc-8004.219.1 0.32 +1.3
215,939 + Xcc-8004.219.1 0.32 +1.5
215,940 - Xcc-8004.219.1 0.32 -2.9
215,940 - Xcc-8004.219.1 0.32 -0.5
215,940 - Xcc-8004.219.1 0.32 +0.4
215,940 - Xcc-8004.219.1 0.32 +1.2
215,940 - Xcc-8004.219.1 0.32 -0.8
216,031 + Xcc-8004.219.1 0.44 +2.5
216,032 - Xcc-8004.219.1 0.44 -0.2
216,302 + Xcc-8004.219.1 0.81 +1.8
216,303 - Xcc-8004.219.1 0.81 +1.0
216,661 + Xcc-8004.220.1 0.15 -2.1
216,661 + Xcc-8004.220.1 0.15 +0.8
216,661 + Xcc-8004.220.1 0.15 -2.9
216,670 + Xcc-8004.220.1 0.16 -1.3
216,670 + Xcc-8004.220.1 0.16 -1.1
216,670 + Xcc-8004.220.1 0.16 +0.5
216,670 + Xcc-8004.220.1 0.16 -1.4
216,671 - Xcc-8004.220.1 0.16 -0.5
216,671 - Xcc-8004.220.1 0.16 -1.8
216,671 - Xcc-8004.220.1 0.16 -0.2
216,671 - Xcc-8004.220.1 0.16 -0.7
216,671 - Xcc-8004.220.1 0.16 -1.7
216,671 - Xcc-8004.220.1 0.16 -1.2
216,728 + Xcc-8004.220.1 0.20 +0.1
216,728 + Xcc-8004.220.1 0.20 -0.5
216,728 + Xcc-8004.220.1 0.20 +0.8
216,729 - Xcc-8004.220.1 0.20 +0.3
216,729 - Xcc-8004.220.1 0.20 +0.8
216,729 - Xcc-8004.220.1 0.20 +0.7
216,786 + Xcc-8004.220.1 0.24 +0.9
216,787 - Xcc-8004.220.1 0.24 +0.0
216,787 - Xcc-8004.220.1 0.24 -0.7
216,787 - Xcc-8004.220.1 0.24 -1.6
216,787 - Xcc-8004.220.1 0.24 -1.1
216,790 + Xcc-8004.220.1 0.24 -0.2
216,790 + Xcc-8004.220.1 0.24 +0.4
216,790 + Xcc-8004.220.1 0.24 -0.5
216,790 + Xcc-8004.220.1 0.24 -0.2
216,790 + Xcc-8004.220.1 0.24 +0.1
216,790 + Xcc-8004.220.1 0.24 +0.6
216,791 - Xcc-8004.220.1 0.24 +0.1
216,791 - Xcc-8004.220.1 0.24 -1.1
216,791 - Xcc-8004.220.1 0.24 -0.3
216,791 - Xcc-8004.220.1 0.24 -0.2
216,791 - Xcc-8004.220.1 0.24 +0.1
216,791 - Xcc-8004.220.1 0.24 +0.6
216,791 - Xcc-8004.220.1 0.24 -1.1
216,791 - Xcc-8004.220.1 0.24 -0.1
216,791 - Xcc-8004.220.1 0.24 +2.4
216,791 - Xcc-8004.220.1 0.24 +1.6
216,791 - Xcc-8004.220.1 0.24 -0.5
216,934 + Xcc-8004.220.1 0.34 -0.9
216,934 + Xcc-8004.220.1 0.34 +3.6
216,934 + Xcc-8004.220.1 0.34 -0.0
216,935 - Xcc-8004.220.1 0.34 +0.3
216,935 - Xcc-8004.220.1 0.34 -2.4
216,979 + Xcc-8004.220.1 0.37 -1.6
217,021 + Xcc-8004.220.1 0.40 -2.0
217,021 + Xcc-8004.220.1 0.40 -0.8
217,021 + Xcc-8004.220.1 0.40 -2.2
217,022 - Xcc-8004.220.1 0.40 -1.6
217,022 - Xcc-8004.220.1 0.40 -0.4
217,048 + Xcc-8004.220.1 0.41 +1.2
217,048 + Xcc-8004.220.1 0.41 +0.8
217,048 + Xcc-8004.220.1 0.41 -0.3
217,048 + Xcc-8004.220.1 0.41 -0.3
217,048 + Xcc-8004.220.1 0.41 -1.2
217,081 + Xcc-8004.220.1 0.44 -1.4
217,081 + Xcc-8004.220.1 0.44 -1.8
217,081 + Xcc-8004.220.1 0.44 +1.4
217,081 + Xcc-8004.220.1 0.44 -0.4
217,081 + Xcc-8004.220.1 0.44 +1.4
217,081 + Xcc-8004.220.1 0.44 +0.9
217,081 + Xcc-8004.220.1 0.44 +0.2
217,082 - Xcc-8004.220.1 0.44 -2.5
217,082 - Xcc-8004.220.1 0.44 +1.2
217,082 - Xcc-8004.220.1 0.44 +2.1
217,082 - Xcc-8004.220.1 0.44 -0.3
217,082 - Xcc-8004.220.1 0.44 +0.1
217,082 - Xcc-8004.220.1 0.44 -0.4
217,093 + Xcc-8004.220.1 0.44 -1.0
217,094 - Xcc-8004.220.1 0.44 +1.1
217,103 + Xcc-8004.220.1 0.45 -0.2
217,104 - Xcc-8004.220.1 0.45 -1.4
217,104 - Xcc-8004.220.1 0.45 -2.3
217,104 - Xcc-8004.220.1 0.45 +0.2
217,111 + Xcc-8004.220.1 0.46 +1.3
217,148 + Xcc-8004.220.1 0.48 +0.1
217,148 + Xcc-8004.220.1 0.48 -2.7
217,148 + Xcc-8004.220.1 0.48 -2.3
217,149 - Xcc-8004.220.1 0.48 -2.8
217,532 - Xcc-8004.220.1 0.74 -0.3
217,554 + Xcc-8004.220.1 0.76 -1.5
217,555 - Xcc-8004.220.1 0.76 -0.9
217,889 + -0.9
217,925 + -1.1
217,926 - -0.2
217,926 - +0.6
217,984 + +1.3
217,984 + +0.6
218,085 + +1.1
218,148 + -0.9
218,148 + +1.6
218,148 + -1.8
218,149 - -1.4
218,149 - +1.2
218,149 - +0.9
218,149 - -0.9
218,219 + -0.5
218,219 + -1.1
218,219 + +2.4
218,220 - -1.9
218,220 - -0.7
218,220 - +0.5
218,304 - +1.4
218,407 + Xcc-8004.222.1 0.24 +0.2
218,407 + Xcc-8004.222.1 0.24 -0.9
218,407 + Xcc-8004.222.1 0.24 -1.9
218,828 + Xcc-8004.222.1 0.88 -0.2
218,828 + Xcc-8004.222.1 0.88 -1.6
218,828 + Xcc-8004.222.1 0.88 -1.6
218,829 - Xcc-8004.222.1 0.88 +1.9
218,829 - Xcc-8004.222.1 0.88 -1.4
218,829 - Xcc-8004.222.1 0.88 -3.0
218,830 + Xcc-8004.222.1 0.88 -0.8
218,830 + Xcc-8004.222.1 0.88 +0.5
218,830 + Xcc-8004.222.1 0.88 +0.3
218,830 + Xcc-8004.222.1 0.88 -0.5
218,830 + Xcc-8004.222.1 0.88 -0.7
218,830 + Xcc-8004.222.1 0.88 +1.0
218,830 + Xcc-8004.222.1 0.88 -1.9
218,830 + Xcc-8004.222.1 0.88 +0.1
218,830 + Xcc-8004.222.1 0.88 -2.0
218,830 + Xcc-8004.222.1 0.88 +0.1
218,830 + Xcc-8004.222.1 0.88 -2.9
218,830 + Xcc-8004.222.1 0.88 -0.9
218,830 + Xcc-8004.222.1 0.88 +0.7
218,830 + Xcc-8004.222.1 0.88 -1.2
218,830 + Xcc-8004.222.1 0.88 -0.5
218,830 + Xcc-8004.222.1 0.88 -2.7
218,830 + Xcc-8004.222.1 0.88 +1.4
218,830 + Xcc-8004.222.1 0.88 +1.7
218,830 + Xcc-8004.222.1 0.88 -0.8
218,830 + Xcc-8004.222.1 0.88 -2.6
218,831 - Xcc-8004.222.1 0.88 +0.2
218,831 - Xcc-8004.222.1 0.88 -1.2
218,831 - Xcc-8004.222.1 0.88 +1.0
218,831 - Xcc-8004.222.1 0.88 +1.5
218,831 - Xcc-8004.222.1 0.88 -2.1
218,831 - Xcc-8004.222.1 0.88 -1.4
218,831 - Xcc-8004.222.1 0.88 +1.3
218,831 - Xcc-8004.222.1 0.88 -1.5
218,831 - Xcc-8004.222.1 0.88 +0.7
218,831 - Xcc-8004.222.1 0.88 -2.0
218,831 - Xcc-8004.222.1 0.88 +0.4
218,831 - Xcc-8004.222.1 0.88 -0.8
218,831 - Xcc-8004.222.1 0.88 +1.4
218,831 - Xcc-8004.222.1 0.88 +0.3
218,831 - Xcc-8004.222.1 0.88 -2.1

Or see this region's nucleotide sequence