Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2171.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2170.1 and Xcc-8004.2171.1 are separated by 91 nucleotidesXcc-8004.2171.1 and Xcc-8004.2172.1 are separated by 199 nucleotides Xcc-8004.2170.1: Xcc-8004.2170.1 - Protein-export membrane protein SecD (TC 3.A.5.1.1), at 2,101,051 to 2,102,919 Xcc-8004.2170.1 Xcc-8004.2171.1: Xcc-8004.2171.1 - Protein-export membrane protein SecF (TC 3.A.5.1.1), at 2,103,011 to 2,103,979 Xcc-8004.2171.1 Xcc-8004.2172.1: Xcc-8004.2172.1 - FIG01214262: hypothetical protein, at 2,104,179 to 2,105,408 Xcc-8004.2172.1 Position (kb) 2103 2104Strain fitness (log2 ratio) -2 -1 0 1 2at 2102.996 kb on + strandat 2104.174 kb on + strandat 2104.174 kb on + strandat 2104.175 kb on - strandat 2104.597 kb on + strand, within Xcc-8004.2172.1at 2104.598 kb on - strand, within Xcc-8004.2172.1at 2104.609 kb on + strand, within Xcc-8004.2172.1at 2104.610 kb on - strand, within Xcc-8004.2172.1at 2104.634 kb on + strand, within Xcc-8004.2172.1at 2104.721 kb on - strand, within Xcc-8004.2172.1at 2104.733 kb on + strand, within Xcc-8004.2172.1at 2104.733 kb on + strand, within Xcc-8004.2172.1at 2104.733 kb on + strand, within Xcc-8004.2172.1at 2104.948 kb on + strand, within Xcc-8004.2172.1at 2104.949 kb on - strand, within Xcc-8004.2172.1at 2104.973 kb on - strand, within Xcc-8004.2172.1at 2104.973 kb on - strand, within Xcc-8004.2172.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,102,996 + -1.6
2,104,174 + -0.6
2,104,174 + +0.2
2,104,175 - -0.6
2,104,597 + Xcc-8004.2172.1 0.34 -0.4
2,104,598 - Xcc-8004.2172.1 0.34 -0.0
2,104,609 + Xcc-8004.2172.1 0.35 -1.7
2,104,610 - Xcc-8004.2172.1 0.35 +1.8
2,104,634 + Xcc-8004.2172.1 0.37 -1.9
2,104,721 - Xcc-8004.2172.1 0.44 -0.5
2,104,733 + Xcc-8004.2172.1 0.45 +0.1
2,104,733 + Xcc-8004.2172.1 0.45 +2.2
2,104,733 + Xcc-8004.2172.1 0.45 -0.8
2,104,948 + Xcc-8004.2172.1 0.63 -0.5
2,104,949 - Xcc-8004.2172.1 0.63 -1.4
2,104,973 - Xcc-8004.2172.1 0.65 +0.4
2,104,973 - Xcc-8004.2172.1 0.65 -0.8

Or see this region's nucleotide sequence