Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2124.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2123.1 and Xcc-8004.2124.1 are separated by 125 nucleotidesXcc-8004.2124.1 and Xcc-8004.2125.1 are separated by 161 nucleotides Xcc-8004.2123.1: Xcc-8004.2123.1 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 2,034,649 to 2,036,289 Xcc-8004.2123.1 Xcc-8004.2124.1: Xcc-8004.2124.1 - hypothetical protein, at 2,036,415 to 2,037,131 Xcc-8004.2124.1 Xcc-8004.2125.1: Xcc-8004.2125.1 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 2,037,293 to 2,038,231 Xcc-8004.2125.1 Position (kb) 2036 2037 2038Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2036.387 kb on + strandat 2036.416 kb on + strandat 2036.416 kb on + strandat 2036.416 kb on + strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.857 kb on + strand, within Xcc-8004.2124.1at 2036.858 kb on - strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.950 kb on - strand, within Xcc-8004.2124.1at 2037.031 kb on + strand, within Xcc-8004.2124.1at 2037.184 kb on + strandat 2037.185 kb on - strandat 2037.543 kb on - strand, within Xcc-8004.2125.1at 2037.648 kb on + strand, within Xcc-8004.2125.1at 2037.648 kb on + strand, within Xcc-8004.2125.1at 2037.649 kb on - strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.733 kb on - strand, within Xcc-8004.2125.1at 2037.733 kb on - strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.846 kb on - strand, within Xcc-8004.2125.1at 2037.846 kb on - strand, within Xcc-8004.2125.1at 2037.916 kb on + strand, within Xcc-8004.2125.1at 2037.917 kb on - strand, within Xcc-8004.2125.1at 2037.989 kb on + strand, within Xcc-8004.2125.1at 2038.116 kb on - strand, within Xcc-8004.2125.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,036,387 + -1.5
2,036,416 + +1.2
2,036,416 + -1.5
2,036,416 + -2.1
2,036,417 - -0.7
2,036,417 - -0.3
2,036,417 - -3.3
2,036,417 - -1.1
2,036,417 - -2.6
2,036,417 - +0.7
2,036,545 + Xcc-8004.2124.1 0.18 -2.4
2,036,545 + Xcc-8004.2124.1 0.18 -2.2
2,036,545 + Xcc-8004.2124.1 0.18 -1.0
2,036,546 - Xcc-8004.2124.1 0.18 -0.2
2,036,546 - Xcc-8004.2124.1 0.18 +0.6
2,036,546 - Xcc-8004.2124.1 0.18 -1.4
2,036,546 - Xcc-8004.2124.1 0.18 -2.1
2,036,574 + Xcc-8004.2124.1 0.22 +4.3
2,036,574 + Xcc-8004.2124.1 0.22 -0.6
2,036,574 + Xcc-8004.2124.1 0.22 -2.9
2,036,575 - Xcc-8004.2124.1 0.22 -0.9
2,036,575 - Xcc-8004.2124.1 0.22 -0.3
2,036,575 - Xcc-8004.2124.1 0.22 +0.6
2,036,575 - Xcc-8004.2124.1 0.22 +4.2
2,036,575 - Xcc-8004.2124.1 0.22 -1.2
2,036,734 + Xcc-8004.2124.1 0.44 -0.3
2,036,734 + Xcc-8004.2124.1 0.44 -2.0
2,036,734 + Xcc-8004.2124.1 0.44 +0.1
2,036,734 + Xcc-8004.2124.1 0.44 -1.1
2,036,857 + Xcc-8004.2124.1 0.62 +0.8
2,036,858 - Xcc-8004.2124.1 0.62 -0.1
2,036,923 + Xcc-8004.2124.1 0.71 -0.4
2,036,923 + Xcc-8004.2124.1 0.71 +4.2
2,036,923 + Xcc-8004.2124.1 0.71 +1.8
2,036,923 + Xcc-8004.2124.1 0.71 -0.4
2,036,923 + Xcc-8004.2124.1 0.71 +0.3
2,036,923 + Xcc-8004.2124.1 0.71 +0.0
2,036,923 + Xcc-8004.2124.1 0.71 -1.1
2,036,924 - Xcc-8004.2124.1 0.71 -1.3
2,036,924 - Xcc-8004.2124.1 0.71 -2.0
2,036,924 - Xcc-8004.2124.1 0.71 -0.7
2,036,924 - Xcc-8004.2124.1 0.71 +1.4
2,036,924 - Xcc-8004.2124.1 0.71 -0.5
2,036,924 - Xcc-8004.2124.1 0.71 +0.6
2,036,924 - Xcc-8004.2124.1 0.71 +1.9
2,036,924 - Xcc-8004.2124.1 0.71 +1.3
2,036,924 - Xcc-8004.2124.1 0.71 -0.9
2,036,924 - Xcc-8004.2124.1 0.71 -0.3
2,036,924 - Xcc-8004.2124.1 0.71 +0.2
2,036,924 - Xcc-8004.2124.1 0.71 +2.2
2,036,924 - Xcc-8004.2124.1 0.71 +1.0
2,036,924 - Xcc-8004.2124.1 0.71 -0.8
2,036,924 - Xcc-8004.2124.1 0.71 -0.6
2,036,924 - Xcc-8004.2124.1 0.71 +0.2
2,036,924 - Xcc-8004.2124.1 0.71 +0.9
2,036,949 + Xcc-8004.2124.1 0.74 +2.2
2,036,949 + Xcc-8004.2124.1 0.74 -2.6
2,036,949 + Xcc-8004.2124.1 0.74 -0.9
2,036,950 - Xcc-8004.2124.1 0.75 -0.3
2,037,031 + Xcc-8004.2124.1 0.86 -0.1
2,037,184 + +0.5
2,037,185 - +1.1
2,037,543 - Xcc-8004.2125.1 0.27 +0.0
2,037,648 + Xcc-8004.2125.1 0.38 +0.1
2,037,648 + Xcc-8004.2125.1 0.38 -0.6
2,037,649 - Xcc-8004.2125.1 0.38 +0.7
2,037,732 + Xcc-8004.2125.1 0.47 -1.6
2,037,732 + Xcc-8004.2125.1 0.47 +1.6
2,037,732 + Xcc-8004.2125.1 0.47 +1.6
2,037,732 + Xcc-8004.2125.1 0.47 -1.8
2,037,733 - Xcc-8004.2125.1 0.47 +0.0
2,037,733 - Xcc-8004.2125.1 0.47 -0.5
2,037,845 + Xcc-8004.2125.1 0.59 +0.7
2,037,845 + Xcc-8004.2125.1 0.59 +2.2
2,037,845 + Xcc-8004.2125.1 0.59 +0.6
2,037,846 - Xcc-8004.2125.1 0.59 +2.4
2,037,846 - Xcc-8004.2125.1 0.59 -1.5
2,037,916 + Xcc-8004.2125.1 0.66 -1.4
2,037,917 - Xcc-8004.2125.1 0.66 -2.1
2,037,989 + Xcc-8004.2125.1 0.74 -3.9
2,038,116 - Xcc-8004.2125.1 0.88 -0.4

Or see this region's nucleotide sequence