Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2110.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,022,113	+		Xcc-8004.2106.1	0.66	-1.2
2,022,113	+		Xcc-8004.2106.1	0.66	+0.9
2,022,113	+		Xcc-8004.2106.1	0.66	-0.5
2,022,113	+		Xcc-8004.2106.1	0.66	+2.1
2,022,113	+		Xcc-8004.2106.1	0.66	+0.9
2,022,113	+		Xcc-8004.2106.1	0.66	-1.4
2,022,113	+		Xcc-8004.2106.1	0.66	+0.1
2,022,113	+		Xcc-8004.2106.1	0.66	+1.1
2,022,113	+		Xcc-8004.2106.1	0.66	+0.4
2,022,113	+		Xcc-8004.2106.1	0.66	+0.2
2,022,113	+		Xcc-8004.2106.1	0.66	-2.0
2,022,114	-		Xcc-8004.2106.1	0.66	-2.9
2,022,114	-		Xcc-8004.2106.1	0.66	+1.1
2,022,114	-		Xcc-8004.2106.1	0.66	-0.9
2,022,114	-		Xcc-8004.2106.1	0.66	-0.7
2,022,114	-		Xcc-8004.2106.1	0.66	-2.8
2,022,114	-		Xcc-8004.2106.1	0.66	-0.6
2,022,114	-		Xcc-8004.2106.1	0.66	+2.2
2,022,114	-		Xcc-8004.2106.1	0.66	-1.4
2,022,114	-		Xcc-8004.2106.1	0.66	-1.5
2,022,126	+		Xcc-8004.2106.1	0.69	+0.8
2,022,126	+		Xcc-8004.2106.1	0.69	+0.5
2,022,127	-		Xcc-8004.2106.1	0.69	+1.2
2,022,160	+		Xcc-8004.2106.1	0.75	+0.8
2,022,160	+		Xcc-8004.2106.1	0.75	+0.4
2,022,160	+		Xcc-8004.2106.1	0.75	+0.8
2,022,160	+		Xcc-8004.2106.1	0.75	-0.6
2,022,160	+		Xcc-8004.2106.1	0.75	+1.6
2,022,161	-		Xcc-8004.2106.1	0.75	+1.5
2,022,161	-		Xcc-8004.2106.1	0.75	+1.2
2,022,161	-		Xcc-8004.2106.1	0.75	+2.1
2,022,161	-		Xcc-8004.2106.1	0.75	-1.3
2,022,161	-		Xcc-8004.2106.1	0.75	+2.4
2,022,161	-		Xcc-8004.2106.1	0.75	-0.6
2,022,192	-		Xcc-8004.2106.1	0.81	-1.5
2,022,192	-		Xcc-8004.2106.1	0.81	-1.8
2,022,201	+		Xcc-8004.2106.1	0.82	+1.4
2,022,201	+		Xcc-8004.2106.1	0.82	-2.4
2,022,201	+		Xcc-8004.2106.1	0.82	+0.6
2,022,202	-		Xcc-8004.2106.1	0.83	-2.7
2,022,202	-		Xcc-8004.2106.1	0.83	-0.9
2,022,202	-		Xcc-8004.2106.1	0.83	-2.2
2,022,322	+				-0.6
2,022,322	+				-1.7
2,022,323	-				+0.3
2,022,323	-				-0.3
2,022,554	+				+2.2
2,022,555	-				-0.0
2,022,555	-				+0.8
2,022,586	+				-0.1
2,022,587	-				+0.3
2,022,587	-				+0.9
2,022,618	+				+3.1
2,022,619	-				+0.7
2,022,619	-				-0.0
2,022,619	-				-0.6
2,022,619	-				+0.1
2,022,817	-				-1.3
2,022,817	-				-0.9
2,022,836	+				+2.8
2,022,836	+				+0.3
2,022,887	-				+0.2
2,022,887	-				-1.4
2,022,887	-				+1.4
2,022,887	-				+1.8
2,022,887	-				-1.4
2,022,887	-				+0.0
2,022,887	-				+3.6
2,022,887	-				+0.0
2,022,894	+				+1.0
2,022,894	+				+0.3
2,022,894	+				+1.5
2,022,894	+				+0.3
2,022,894	+				+0.3
2,022,894	+				+1.2
2,022,895	-				+2.4
2,022,895	-				+1.8
2,022,895	-				+0.0
2,022,895	-				+0.6
2,022,895	-				+1.4
2,022,895	-				-0.8
2,022,895	-				-1.3
2,022,895	-				-1.9
2,022,895	-				+1.3
2,022,895	-				+0.6
2,022,895	-				-0.0
2,022,895	-				+3.5
2,022,895	-				+1.0
2,022,895	-				+1.2
2,022,895	-				+0.1
2,022,895	-				+0.6
2,022,895	-				-0.9
2,022,951	+				-2.9
2,022,951	+				-0.8
2,022,952	-				-2.7
2,022,952	-				+0.2
2,022,960	+				+3.5
2,022,960	+				-0.5
2,022,961	-				-2.6
2,022,961	-				-0.1
2,022,987	-				+0.0
2,023,060	+		Xcc-8004.2110.1	0.16	-2.5
2,023,060	+		Xcc-8004.2110.1	0.16	-2.1
2,023,231	-				+0.3
2,023,266	+				-0.3
2,023,266	+				+1.1
2,023,267	-				-0.7
2,023,267	-				-0.8
2,023,267	-				-1.5
2,023,267	-				-1.4
2,023,267	-				-0.6
2,023,285	-				-0.4
2,023,359	+		Xcc-8004.2112.1	0.15	+0.7
2,023,359	+		Xcc-8004.2112.1	0.15	-0.4
2,023,359	+		Xcc-8004.2112.1	0.15	-0.2
2,023,359	+		Xcc-8004.2112.1	0.15	+0.8
2,023,360	-		Xcc-8004.2112.1	0.15	-1.0
2,023,360	-		Xcc-8004.2112.1	0.15	-0.4
2,023,360	-		Xcc-8004.2112.1	0.15	-0.8
2,023,360	-		Xcc-8004.2112.1	0.15	-0.4
2,023,360	-		Xcc-8004.2112.1	0.15	+2.1
2,023,360	-		Xcc-8004.2112.1	0.15	-0.5
2,023,360	-		Xcc-8004.2112.1	0.15	-0.6
2,023,360	-		Xcc-8004.2112.1	0.15	-0.4
2,023,360	-		Xcc-8004.2112.1	0.15	+1.2
2,023,472	+		Xcc-8004.2112.1	0.28	+0.1
2,023,473	-		Xcc-8004.2112.1	0.28	-1.9
2,023,473	-		Xcc-8004.2112.1	0.28	-1.0
2,023,473	-		Xcc-8004.2112.1	0.28	+0.2
2,023,653	+		Xcc-8004.2112.1	0.49	-1.3
2,023,653	+		Xcc-8004.2112.1	0.49	-1.1
2,023,654	-		Xcc-8004.2112.1	0.50	+0.4
2,023,654	-		Xcc-8004.2112.1	0.50	+0.5
2,023,654	-		Xcc-8004.2112.1	0.50	-1.0
2,023,654	-		Xcc-8004.2112.1	0.50	-0.1
2,023,662	+		Xcc-8004.2112.1	0.50	-1.0
2,023,662	+		Xcc-8004.2112.1	0.50	-2.7
2,023,662	+		Xcc-8004.2112.1	0.50	+0.5
2,023,663	-		Xcc-8004.2112.1	0.51	-0.5
2,023,663	-		Xcc-8004.2112.1	0.51	-0.1
2,023,663	-		Xcc-8004.2112.1	0.51	+2.2
2,023,773	+		Xcc-8004.2112.1	0.63	+1.0
2,023,773	+		Xcc-8004.2112.1	0.63	-0.4
2,023,773	+		Xcc-8004.2112.1	0.63	-0.1
2,023,773	+		Xcc-8004.2112.1	0.63	-0.4
2,023,774	-		Xcc-8004.2112.1	0.64	+0.3
2,023,774	-		Xcc-8004.2112.1	0.64	+3.2
2,023,941	+		Xcc-8004.2112.1	0.83	-0.4
2,023,941	+		Xcc-8004.2112.1	0.83	+1.2
2,023,941	+		Xcc-8004.2112.1	0.83	-0.9
2,023,941	+		Xcc-8004.2112.1	0.83	-0.0
2,023,941	+		Xcc-8004.2112.1	0.83	-0.1
2,023,942	-		Xcc-8004.2112.1	0.83	-0.4
2,023,942	-		Xcc-8004.2112.1	0.83	-0.3
2,023,977	+		Xcc-8004.2112.1	0.87	-0.6
2,023,977	+		Xcc-8004.2112.1	0.87	+0.4
2,023,977	+		Xcc-8004.2112.1	0.87	-0.3
2,023,977	+		Xcc-8004.2112.1	0.87	+1.5
2,023,978	-		Xcc-8004.2112.1	0.87	+1.7
2,023,978	-		Xcc-8004.2112.1	0.87	-3.1
2,023,978	-		Xcc-8004.2112.1	0.87	-0.2
2,023,978	-		Xcc-8004.2112.1	0.87	+0.8
2,024,031	+				-0.1
2,024,031	+				-2.2
2,024,031	+				-2.5
2,024,031	+				+1.9
2,024,032	-				+0.9
2,024,037	+				+1.2
2,024,038	-				-1.0
2,024,038	-				-0.8
2,024,109	+				-1.0
2,024,110	-				+0.6
2,024,174	+		Xcc-8004.2113.1	0.31	-1.9