Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.189.1 and Xcc-8004.192.1 are separated by 381 nucleotides Xcc-8004.192.1 and Xcc-8004.193.1 overlap by 11 nucleotides Xcc-8004.193.1 and Xcc-8004.194.1 overlap by 4 nucleotides
Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532
Xcc-8004.189.1
Xcc-8004.192.1: Xcc-8004.192.1 - putative; ORF located using Glimmer/Genemark, at 184,914 to 185,408
Xcc-8004.192.1
Xcc-8004.193.1: Xcc-8004.193.1 - putative; ORF located using Glimmer/Genemark, at 185,398 to 185,670
Xcc-8004.193.1
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Position (kb) 185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 184.427 kb on - strand, within Xcc-8004.189.1 at 184.603 kb on + strand at 184.616 kb on - strand at 184.622 kb on + strand at 184.623 kb on - strand at 184.623 kb on - strand at 184.670 kb on + strand at 184.670 kb on + strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.679 kb on - strand at 184.890 kb on + strand at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.074 kb on + strand, within Xcc-8004.192.1 at 185.075 kb on - strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.133 kb on + strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.288 kb on + strand, within Xcc-8004.192.1 at 185.406 kb on + strand at 185.406 kb on + strand at 185.406 kb on + strand at 185.406 kb on + strand at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.617 kb on + strand, within Xcc-8004.193.1 at 185.618 kb on - strand, within Xcc-8004.193.1 at 185.618 kb on - strand, within Xcc-8004.193.1 at 185.751 kb on + strand at 185.751 kb on + strand at 185.751 kb on + strand at 185.752 kb on - strand at 185.946 kb on + strand, within Xcc-8004.194.1 at 185.946 kb on + strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.991 kb on + strand, within Xcc-8004.194.1 at 186.057 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 184,427 - Xcc-8004.189.1 0.45 +4.0 184,603 + +0.8 184,616 - -0.9 184,622 + -1.7 184,623 - +0.1 184,623 - +0.0 184,670 + -1.7 184,670 + -1.4 184,671 - -2.9 184,671 - -1.4 184,671 - +1.7 184,678 + +0.8 184,678 + -1.4 184,678 + +0.8 184,678 + -0.6 184,679 - -0.0 184,890 + +0.5 185,066 + Xcc-8004.192.1 0.31 -0.2 185,066 + Xcc-8004.192.1 0.31 -0.2 185,066 + Xcc-8004.192.1 0.31 +1.1 185,066 + Xcc-8004.192.1 0.31 -1.1 185,066 + Xcc-8004.192.1 0.31 +0.1 185,067 - Xcc-8004.192.1 0.31 +0.8 185,067 - Xcc-8004.192.1 0.31 -1.8 185,067 - Xcc-8004.192.1 0.31 -2.6 185,067 - Xcc-8004.192.1 0.31 -1.8 185,074 + Xcc-8004.192.1 0.32 +1.0 185,075 - Xcc-8004.192.1 0.33 +1.1 185,114 + Xcc-8004.192.1 0.40 +0.1 185,114 + Xcc-8004.192.1 0.40 -1.4 185,114 + Xcc-8004.192.1 0.40 +1.3 185,114 + Xcc-8004.192.1 0.40 -0.9 185,133 + Xcc-8004.192.1 0.44 -0.4 185,170 - Xcc-8004.192.1 0.52 -0.9 185,170 - Xcc-8004.192.1 0.52 +0.6 185,288 + Xcc-8004.192.1 0.76 +0.6 185,406 + +0.9 185,406 + -3.0 185,406 + -0.1 185,406 + -2.1 185,493 + Xcc-8004.193.1 0.35 -0.6 185,493 + Xcc-8004.193.1 0.35 +0.4 185,493 + Xcc-8004.193.1 0.35 -2.0 185,493 + Xcc-8004.193.1 0.35 -2.5 185,493 + Xcc-8004.193.1 0.35 -0.6 185,493 + Xcc-8004.193.1 0.35 -1.6 185,497 + Xcc-8004.193.1 0.36 -1.3 185,497 + Xcc-8004.193.1 0.36 -0.5 185,497 + Xcc-8004.193.1 0.36 +0.1 185,497 + Xcc-8004.193.1 0.36 -0.8 185,497 + Xcc-8004.193.1 0.36 +1.4 185,497 + Xcc-8004.193.1 0.36 -0.4 185,497 + Xcc-8004.193.1 0.36 +1.3 185,498 - Xcc-8004.193.1 0.37 -1.2 185,498 - Xcc-8004.193.1 0.37 -1.1 185,498 - Xcc-8004.193.1 0.37 +0.1 185,498 - Xcc-8004.193.1 0.37 +1.2 185,498 - Xcc-8004.193.1 0.37 -1.4 185,499 + Xcc-8004.193.1 0.37 -2.8 185,499 + Xcc-8004.193.1 0.37 +0.3 185,499 + Xcc-8004.193.1 0.37 +1.2 185,500 - Xcc-8004.193.1 0.37 +0.1 185,500 - Xcc-8004.193.1 0.37 -3.2 185,500 - Xcc-8004.193.1 0.37 -2.5 185,617 + Xcc-8004.193.1 0.80 -1.0 185,618 - Xcc-8004.193.1 0.81 -2.1 185,618 - Xcc-8004.193.1 0.81 +0.1 185,751 + -0.8 185,751 + -0.4 185,751 + -1.2 185,752 - +0.5 185,946 + Xcc-8004.194.1 0.18 +0.8 185,946 + Xcc-8004.194.1 0.18 +1.0 185,947 - Xcc-8004.194.1 0.18 -0.4 185,947 - Xcc-8004.194.1 0.18 +1.2 185,947 - Xcc-8004.194.1 0.18 -2.5 185,991 + Xcc-8004.194.1 0.21 -1.0 186,057 + Xcc-8004.194.1 0.25 -1.8 186,102 + Xcc-8004.194.1 0.28 -2.4 186,102 + Xcc-8004.194.1 0.28 -1.4 186,102 + Xcc-8004.194.1 0.28 -0.8 186,102 + Xcc-8004.194.1 0.28 +0.1 186,102 + Xcc-8004.194.1 0.28 +1.0 186,103 - Xcc-8004.194.1 0.28 +0.4 186,103 - Xcc-8004.194.1 0.28 +3.1 186,103 - Xcc-8004.194.1 0.28 -0.1 186,103 - Xcc-8004.194.1 0.28 +2.4 186,499 - Xcc-8004.194.1 0.54 +1.7 186,499 - Xcc-8004.194.1 0.54 +1.4 186,537 + Xcc-8004.194.1 0.57 -1.5 186,537 + Xcc-8004.194.1 0.57 +1.5 186,538 - Xcc-8004.194.1 0.57 +1.4 186,538 - Xcc-8004.194.1 0.57 -0.1
Or see this region's nucleotide sequence