Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1844.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1842.1 and Xcc-8004.1843.1 overlap by 55 nucleotidesXcc-8004.1843.1 and Xcc-8004.1844.1 are separated by 69 nucleotidesXcc-8004.1844.1 and Xcc-8004.1845.1 overlap by 115 nucleotides Xcc-8004.1842.1: Xcc-8004.1842.1 - Mlr3171 protein, at 1,775,828 to 1,778,194 Xcc-8004.1842.1 Xcc-8004.1843.1: Xcc-8004.1843.1 - Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70), at 1,778,140 to 1,778,973 Xcc-8004.1843.1 Xcc-8004.1844.1: Xcc-8004.1844.1 - Mobile element protein, at 1,779,043 to 1,779,180 Xcc-8004.1844.1 Xcc-8004.1845.1: Xcc-8004.1845.1 - Mobile element protein, at 1,779,066 to 1,781,783 Xcc-8004.1845.1 Position (kb) 1779 1780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1778.125 kb on + strandat 1778.126 kb on - strandat 1778.126 kb on - strandat 1778.126 kb on - strandat 1778.275 kb on - strand, within Xcc-8004.1843.1at 1778.443 kb on - strand, within Xcc-8004.1843.1at 1778.443 kb on - strand, within Xcc-8004.1843.1at 1778.458 kb on + strand, within Xcc-8004.1843.1at 1778.458 kb on + strand, within Xcc-8004.1843.1at 1778.458 kb on + strand, within Xcc-8004.1843.1at 1778.459 kb on - strand, within Xcc-8004.1843.1at 1778.459 kb on - strand, within Xcc-8004.1843.1at 1778.459 kb on - strand, within Xcc-8004.1843.1at 1778.459 kb on - strand, within Xcc-8004.1843.1at 1778.459 kb on - strand, within Xcc-8004.1843.1at 1778.662 kb on + strand, within Xcc-8004.1843.1at 1778.662 kb on + strand, within Xcc-8004.1843.1at 1778.663 kb on - strand, within Xcc-8004.1843.1at 1778.663 kb on - strand, within Xcc-8004.1843.1at 1778.758 kb on - strand, within Xcc-8004.1843.1at 1778.961 kb on + strandat 1778.961 kb on + strandat 1778.962 kb on - strandat 1778.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,778,125 + -0.6
1,778,126 - +2.1
1,778,126 - +2.2
1,778,126 - +1.1
1,778,275 - Xcc-8004.1843.1 0.16 +0.6
1,778,443 - Xcc-8004.1843.1 0.36 -1.7
1,778,443 - Xcc-8004.1843.1 0.36 -3.1
1,778,458 + Xcc-8004.1843.1 0.38 +0.1
1,778,458 + Xcc-8004.1843.1 0.38 +2.7
1,778,458 + Xcc-8004.1843.1 0.38 +0.8
1,778,459 - Xcc-8004.1843.1 0.38 -1.6
1,778,459 - Xcc-8004.1843.1 0.38 -2.1
1,778,459 - Xcc-8004.1843.1 0.38 +0.6
1,778,459 - Xcc-8004.1843.1 0.38 +0.6
1,778,459 - Xcc-8004.1843.1 0.38 +2.0
1,778,662 + Xcc-8004.1843.1 0.63 -0.4
1,778,662 + Xcc-8004.1843.1 0.63 +2.3
1,778,663 - Xcc-8004.1843.1 0.63 -1.3
1,778,663 - Xcc-8004.1843.1 0.63 +0.6
1,778,758 - Xcc-8004.1843.1 0.74 +0.3
1,778,961 + +0.6
1,778,961 + +0.5
1,778,962 - +0.1
1,778,962 - -0.6

Or see this region's nucleotide sequence