Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1841.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1839.1 and Xcc-8004.1840.1 are separated by 30 nucleotidesXcc-8004.1840.1 and Xcc-8004.1841.1 are separated by 139 nucleotidesXcc-8004.1841.1 and Xcc-8004.1842.1 are separated by 175 nucleotides Xcc-8004.1839.1: Xcc-8004.1839.1 - FIG01210863: hypothetical protein, at 1,772,373 to 1,773,020 Xcc-8004.1839.1 Xcc-8004.1840.1: Xcc-8004.1840.1 - FIG01210863: hypothetical protein, at 1,773,051 to 1,773,584 Xcc-8004.1840.1 Xcc-8004.1841.1: Xcc-8004.1841.1 - DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13), at 1,773,724 to 1,775,652 Xcc-8004.1841.1 Xcc-8004.1842.1: Xcc-8004.1842.1 - Mlr3171 protein, at 1,775,828 to 1,778,194 Xcc-8004.1842.1 Position (kb) 1773 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1773.142 kb on + strand, within Xcc-8004.1840.1at 1773.142 kb on + strand, within Xcc-8004.1840.1at 1773.142 kb on + strand, within Xcc-8004.1840.1at 1773.160 kb on + strand, within Xcc-8004.1840.1at 1773.160 kb on + strand, within Xcc-8004.1840.1at 1773.161 kb on - strand, within Xcc-8004.1840.1at 1773.211 kb on + strand, within Xcc-8004.1840.1at 1773.211 kb on + strand, within Xcc-8004.1840.1at 1773.211 kb on + strand, within Xcc-8004.1840.1at 1773.211 kb on + strand, within Xcc-8004.1840.1at 1773.212 kb on - strand, within Xcc-8004.1840.1at 1773.212 kb on - strand, within Xcc-8004.1840.1at 1773.212 kb on - strand, within Xcc-8004.1840.1at 1773.212 kb on - strand, within Xcc-8004.1840.1at 1773.358 kb on + strand, within Xcc-8004.1840.1at 1773.358 kb on + strand, within Xcc-8004.1840.1at 1773.358 kb on + strand, within Xcc-8004.1840.1at 1773.358 kb on + strand, within Xcc-8004.1840.1at 1773.359 kb on - strand, within Xcc-8004.1840.1at 1773.392 kb on - strand, within Xcc-8004.1840.1at 1773.392 kb on - strand, within Xcc-8004.1840.1at 1773.392 kb on - strand, within Xcc-8004.1840.1at 1773.466 kb on + strand, within Xcc-8004.1840.1at 1773.466 kb on + strand, within Xcc-8004.1840.1at 1773.467 kb on - strand, within Xcc-8004.1840.1at 1773.467 kb on - strand, within Xcc-8004.1840.1at 1773.467 kb on - strand, within Xcc-8004.1840.1at 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.675 kb on + strandat 1773.676 kb on - strandat 1773.676 kb on - strandat 1773.676 kb on - strandat 1773.719 kb on + strandat 1773.719 kb on + strandat 1774.718 kb on - strand, within Xcc-8004.1841.1at 1774.939 kb on + strand, within Xcc-8004.1841.1at 1775.206 kb on + strand, within Xcc-8004.1841.1at 1775.207 kb on - strand, within Xcc-8004.1841.1at 1775.287 kb on + strand, within Xcc-8004.1841.1at 1775.374 kb on + strand, within Xcc-8004.1841.1at 1775.374 kb on + strand, within Xcc-8004.1841.1at 1775.375 kb on + strand, within Xcc-8004.1841.1at 1775.375 kb on - strand, within Xcc-8004.1841.1at 1775.375 kb on - strand, within Xcc-8004.1841.1at 1775.405 kb on - strand, within Xcc-8004.1841.1at 1775.650 kb on + strandat 1775.651 kb on - strandat 1775.990 kb on + strandat 1775.990 kb on + strandat 1775.991 kb on - strandat 1776.005 kb on + strandat 1776.005 kb on + strandat 1776.006 kb on - strandat 1776.125 kb on + strand, within Xcc-8004.1842.1at 1776.125 kb on + strand, within Xcc-8004.1842.1at 1776.125 kb on + strand, within Xcc-8004.1842.1at 1776.125 kb on + strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1at 1776.126 kb on - strand, within Xcc-8004.1842.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,773,142 + Xcc-8004.1840.1 0.17 -1.5
1,773,142 + Xcc-8004.1840.1 0.17 -1.0
1,773,142 + Xcc-8004.1840.1 0.17 -1.8
1,773,160 + Xcc-8004.1840.1 0.20 +1.2
1,773,160 + Xcc-8004.1840.1 0.20 -1.2
1,773,161 - Xcc-8004.1840.1 0.21 -1.2
1,773,211 + Xcc-8004.1840.1 0.30 +1.7
1,773,211 + Xcc-8004.1840.1 0.30 +2.2
1,773,211 + Xcc-8004.1840.1 0.30 +0.4
1,773,211 + Xcc-8004.1840.1 0.30 +1.1
1,773,212 - Xcc-8004.1840.1 0.30 -0.4
1,773,212 - Xcc-8004.1840.1 0.30 -1.3
1,773,212 - Xcc-8004.1840.1 0.30 +1.0
1,773,212 - Xcc-8004.1840.1 0.30 +2.2
1,773,358 + Xcc-8004.1840.1 0.57 +1.2
1,773,358 + Xcc-8004.1840.1 0.57 -1.3
1,773,358 + Xcc-8004.1840.1 0.57 -1.5
1,773,358 + Xcc-8004.1840.1 0.57 -1.3
1,773,359 - Xcc-8004.1840.1 0.58 -1.5
1,773,392 - Xcc-8004.1840.1 0.64 +1.2
1,773,392 - Xcc-8004.1840.1 0.64 +0.2
1,773,392 - Xcc-8004.1840.1 0.64 +0.1
1,773,466 + Xcc-8004.1840.1 0.78 -2.5
1,773,466 + Xcc-8004.1840.1 0.78 -0.2
1,773,467 - Xcc-8004.1840.1 0.78 +2.5
1,773,467 - Xcc-8004.1840.1 0.78 -0.7
1,773,467 - Xcc-8004.1840.1 0.78 -0.8
1,773,675 + -2.0
1,773,675 + +0.3
1,773,675 + -1.0
1,773,675 + -1.5
1,773,675 + +0.3
1,773,675 + +0.8
1,773,675 + +3.6
1,773,675 + +2.2
1,773,675 + +0.9
1,773,675 + +1.3
1,773,675 + +0.7
1,773,675 + -0.2
1,773,675 + -0.4
1,773,675 + -1.0
1,773,676 - -1.4
1,773,676 - -1.0
1,773,676 - +2.7
1,773,719 + +1.6
1,773,719 + -0.4
1,774,718 - Xcc-8004.1841.1 0.52 +0.6
1,774,939 + Xcc-8004.1841.1 0.63 +0.6
1,775,206 + Xcc-8004.1841.1 0.77 +0.4
1,775,207 - Xcc-8004.1841.1 0.77 -2.0
1,775,287 + Xcc-8004.1841.1 0.81 -0.4
1,775,374 + Xcc-8004.1841.1 0.86 -0.2
1,775,374 + Xcc-8004.1841.1 0.86 +1.7
1,775,375 + Xcc-8004.1841.1 0.86 -0.9
1,775,375 - Xcc-8004.1841.1 0.86 -0.2
1,775,375 - Xcc-8004.1841.1 0.86 +3.5
1,775,405 - Xcc-8004.1841.1 0.87 -1.3
1,775,650 + -1.3
1,775,651 - +0.8
1,775,990 + -0.4
1,775,990 + +1.3
1,775,991 - +1.1
1,776,005 + +0.9
1,776,005 + +0.1
1,776,006 - +0.5
1,776,125 + Xcc-8004.1842.1 0.13 -1.8
1,776,125 + Xcc-8004.1842.1 0.13 -1.4
1,776,125 + Xcc-8004.1842.1 0.13 +2.1
1,776,125 + Xcc-8004.1842.1 0.13 +1.4
1,776,126 - Xcc-8004.1842.1 0.13 -0.7
1,776,126 - Xcc-8004.1842.1 0.13 +1.6
1,776,126 - Xcc-8004.1842.1 0.13 +1.9
1,776,126 - Xcc-8004.1842.1 0.13 -0.7
1,776,126 - Xcc-8004.1842.1 0.13 +2.3
1,776,126 - Xcc-8004.1842.1 0.13 -0.8
1,776,126 - Xcc-8004.1842.1 0.13 -1.8

Or see this region's nucleotide sequence