Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1678.1 and Xcc-8004.1679.1 overlap by 4 nucleotides Xcc-8004.1679.1 and Xcc-8004.1680.1 are separated by 17 nucleotides Xcc-8004.1680.1 and Xcc-8004.1681.1 overlap by 4 nucleotides
Xcc-8004.1678.1: Xcc-8004.1678.1 - Putative permease often clustered with de novo purine synthesis, at 1,612,786 to 1,613,952
Xcc-8004.1678.1
Xcc-8004.1679.1: Xcc-8004.1679.1 - Chromosomal replication initiator protein DnaA, at 1,613,949 to 1,614,650
Xcc-8004.1679.1
Xcc-8004.1680.1: Xcc-8004.1680.1 - FIG006611: nucleotidyltransferase, at 1,614,668 to 1,615,378
Xcc-8004.1680.1
Xcc-8004.1681.1: Xcc-8004.1681.1 - hypothetical protein, at 1,615,375 to 1,616,412
Xcc-8004.1681.1
Position (kb) 1614
1615
1616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1613.680 kb on + strand, within Xcc-8004.1678.1 at 1613.680 kb on + strand, within Xcc-8004.1678.1 at 1613.680 kb on + strand, within Xcc-8004.1678.1 at 1613.830 kb on + strand, within Xcc-8004.1678.1 at 1613.845 kb on + strand at 1613.863 kb on + strand at 1613.863 kb on + strand at 1613.863 kb on + strand at 1614.725 kb on + strand at 1614.725 kb on + strand at 1614.725 kb on + strand at 1614.725 kb on + strand at 1614.725 kb on + strand at 1614.725 kb on + strand at 1614.869 kb on + strand, within Xcc-8004.1680.1 at 1614.900 kb on + strand, within Xcc-8004.1680.1 at 1614.900 kb on + strand, within Xcc-8004.1680.1 at 1614.901 kb on - strand, within Xcc-8004.1680.1 at 1614.972 kb on + strand, within Xcc-8004.1680.1 at 1614.973 kb on - strand, within Xcc-8004.1680.1 at 1614.973 kb on - strand, within Xcc-8004.1680.1 at 1614.973 kb on - strand, within Xcc-8004.1680.1 at 1615.146 kb on + strand, within Xcc-8004.1680.1 at 1615.147 kb on - strand, within Xcc-8004.1680.1 at 1615.147 kb on - strand, within Xcc-8004.1680.1 at 1615.147 kb on - strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.152 kb on + strand, within Xcc-8004.1680.1 at 1615.153 kb on - strand, within Xcc-8004.1680.1 at 1615.222 kb on + strand, within Xcc-8004.1680.1 at 1615.222 kb on + strand, within Xcc-8004.1680.1 at 1615.222 kb on + strand, within Xcc-8004.1680.1 at 1615.222 kb on + strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.223 kb on - strand, within Xcc-8004.1680.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.499 kb on + strand, within Xcc-8004.1681.1 at 1615.500 kb on - strand, within Xcc-8004.1681.1 at 1615.529 kb on + strand, within Xcc-8004.1681.1 at 1615.550 kb on + strand, within Xcc-8004.1681.1 at 1615.673 kb on + strand, within Xcc-8004.1681.1 at 1615.702 kb on + strand, within Xcc-8004.1681.1 at 1615.748 kb on + strand, within Xcc-8004.1681.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,613,680 + Xcc-8004.1678.1 0.77 -0.9 1,613,680 + Xcc-8004.1678.1 0.77 +0.8 1,613,680 + Xcc-8004.1678.1 0.77 -0.2 1,613,830 + Xcc-8004.1678.1 0.89 +0.1 1,613,845 + -0.9 1,613,863 + +0.5 1,613,863 + +0.9 1,613,863 + -1.1 1,614,725 + -1.9 1,614,725 + -0.1 1,614,725 + +0.1 1,614,725 + -1.6 1,614,725 + -0.9 1,614,725 + +2.2 1,614,869 + Xcc-8004.1680.1 0.28 +1.2 1,614,900 + Xcc-8004.1680.1 0.33 -1.6 1,614,900 + Xcc-8004.1680.1 0.33 -0.4 1,614,901 - Xcc-8004.1680.1 0.33 -1.8 1,614,972 + Xcc-8004.1680.1 0.43 -0.6 1,614,973 - Xcc-8004.1680.1 0.43 -1.7 1,614,973 - Xcc-8004.1680.1 0.43 -2.1 1,614,973 - Xcc-8004.1680.1 0.43 -1.9 1,615,146 + Xcc-8004.1680.1 0.67 -0.4 1,615,147 - Xcc-8004.1680.1 0.67 -1.1 1,615,147 - Xcc-8004.1680.1 0.67 -0.9 1,615,147 - Xcc-8004.1680.1 0.67 -0.8 1,615,152 + Xcc-8004.1680.1 0.68 -0.9 1,615,152 + Xcc-8004.1680.1 0.68 -3.4 1,615,152 + Xcc-8004.1680.1 0.68 -2.9 1,615,152 + Xcc-8004.1680.1 0.68 -2.7 1,615,152 + Xcc-8004.1680.1 0.68 -2.8 1,615,152 + Xcc-8004.1680.1 0.68 +1.0 1,615,153 - Xcc-8004.1680.1 0.68 -1.8 1,615,222 + Xcc-8004.1680.1 0.78 -2.5 1,615,222 + Xcc-8004.1680.1 0.78 -0.0 1,615,222 + Xcc-8004.1680.1 0.78 -0.3 1,615,222 + Xcc-8004.1680.1 0.78 -2.4 1,615,223 - Xcc-8004.1680.1 0.78 -1.1 1,615,223 - Xcc-8004.1680.1 0.78 -0.6 1,615,223 - Xcc-8004.1680.1 0.78 -2.1 1,615,223 - Xcc-8004.1680.1 0.78 -1.0 1,615,223 - Xcc-8004.1680.1 0.78 -2.1 1,615,223 - Xcc-8004.1680.1 0.78 -1.8 1,615,499 + Xcc-8004.1681.1 0.12 +1.1 1,615,499 + Xcc-8004.1681.1 0.12 -1.4 1,615,499 + Xcc-8004.1681.1 0.12 +2.0 1,615,499 + Xcc-8004.1681.1 0.12 +0.4 1,615,499 + Xcc-8004.1681.1 0.12 -1.4 1,615,499 + Xcc-8004.1681.1 0.12 -1.3 1,615,499 + Xcc-8004.1681.1 0.12 -0.9 1,615,499 + Xcc-8004.1681.1 0.12 -0.1 1,615,500 - Xcc-8004.1681.1 0.12 -1.2 1,615,529 + Xcc-8004.1681.1 0.15 -0.0 1,615,550 + Xcc-8004.1681.1 0.17 -0.8 1,615,673 + Xcc-8004.1681.1 0.29 -0.8 1,615,702 + Xcc-8004.1681.1 0.32 +2.2 1,615,748 + Xcc-8004.1681.1 0.36 +1.3
Or see this region's nucleotide sequence