Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1635.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1634.1 and Xcc-8004.1635.1 are separated by 75 nucleotidesXcc-8004.1635.1 and Xcc-8004.1636.1 are separated by 15 nucleotidesXcc-8004.1636.1 and Xcc-8004.1637.1 are separated by 27 nucleotides Xcc-8004.1634.1: Xcc-8004.1634.1 - Tryptophan halogenase, at 1,574,876 to 1,576,372 Xcc-8004.1634.1 Xcc-8004.1635.1: Xcc-8004.1635.1 - hypothetical protein, at 1,576,448 to 1,576,576 Xcc-8004.1635.1 Xcc-8004.1636.1: Xcc-8004.1636.1 - hypothetical protein, at 1,576,592 to 1,577,011 Xcc-8004.1636.1 Xcc-8004.1637.1: Xcc-8004.1637.1 - FIG01210422: hypothetical protein, at 1,577,039 to 1,577,551 Xcc-8004.1637.1 Position (kb) 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1575.555 kb on - strand, within Xcc-8004.1634.1at 1575.555 kb on - strand, within Xcc-8004.1634.1at 1575.633 kb on - strand, within Xcc-8004.1634.1at 1575.634 kb on + strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.635 kb on - strand, within Xcc-8004.1634.1at 1575.710 kb on + strand, within Xcc-8004.1634.1at 1575.711 kb on - strand, within Xcc-8004.1634.1at 1576.035 kb on - strand, within Xcc-8004.1634.1at 1576.340 kb on + strandat 1576.341 kb on - strandat 1576.396 kb on + strandat 1576.397 kb on - strandat 1576.593 kb on + strandat 1576.594 kb on - strandat 1576.594 kb on - strandat 1576.594 kb on - strandat 1576.594 kb on - strandat 1576.638 kb on - strand, within Xcc-8004.1636.1at 1576.638 kb on - strand, within Xcc-8004.1636.1at 1576.660 kb on - strand, within Xcc-8004.1636.1at 1576.660 kb on - strand, within Xcc-8004.1636.1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.900 kb on + strand, within Xcc-8004.1636.1at 1576.901 kb on - strand, within Xcc-8004.1636.1at 1576.901 kb on - strand, within Xcc-8004.1636.1at 1577.082 kb on + strandat 1577.082 kb on + strandat 1577.115 kb on + strand, within Xcc-8004.1637.1at 1577.115 kb on + strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.280 kb on + strand, within Xcc-8004.1637.1at 1577.281 kb on - strand, within Xcc-8004.1637.1at 1577.299 kb on - strand, within Xcc-8004.1637.1at 1577.328 kb on + strand, within Xcc-8004.1637.1at 1577.329 kb on - strand, within Xcc-8004.1637.1at 1577.443 kb on + strand, within Xcc-8004.1637.1at 1577.444 kb on - strand, within Xcc-8004.1637.1at 1577.444 kb on - strand, within Xcc-8004.1637.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,575,555 - Xcc-8004.1634.1 0.45 +1.5
1,575,555 - Xcc-8004.1634.1 0.45 -2.2
1,575,633 - Xcc-8004.1634.1 0.51 -2.6
1,575,634 + Xcc-8004.1634.1 0.51 -0.0
1,575,635 - Xcc-8004.1634.1 0.51 -2.6
1,575,635 - Xcc-8004.1634.1 0.51 +0.7
1,575,635 - Xcc-8004.1634.1 0.51 -0.6
1,575,710 + Xcc-8004.1634.1 0.56 +1.3
1,575,711 - Xcc-8004.1634.1 0.56 -3.2
1,576,035 - Xcc-8004.1634.1 0.77 +0.3
1,576,340 + +0.5
1,576,341 - -1.3
1,576,396 + -1.1
1,576,397 - +2.0
1,576,593 + -2.5
1,576,594 - +2.2
1,576,594 - -3.2
1,576,594 - -0.8
1,576,594 - -0.1
1,576,638 - Xcc-8004.1636.1 0.11 -1.2
1,576,638 - Xcc-8004.1636.1 0.11 -0.8
1,576,660 - Xcc-8004.1636.1 0.16 -1.2
1,576,660 - Xcc-8004.1636.1 0.16 -2.6
1,576,805 - Xcc-8004.1636.1 0.51 +0.9
1,576,805 - Xcc-8004.1636.1 0.51 +0.6
1,576,805 - Xcc-8004.1636.1 0.51 +2.2
1,576,900 + Xcc-8004.1636.1 0.73 -0.4
1,576,901 - Xcc-8004.1636.1 0.74 -0.4
1,576,901 - Xcc-8004.1636.1 0.74 +0.9
1,577,082 + -0.4
1,577,082 + +2.7
1,577,115 + Xcc-8004.1637.1 0.15 -0.7
1,577,115 + Xcc-8004.1637.1 0.15 -1.8
1,577,116 - Xcc-8004.1637.1 0.15 +2.3
1,577,116 - Xcc-8004.1637.1 0.15 +1.7
1,577,116 - Xcc-8004.1637.1 0.15 -1.0
1,577,235 + Xcc-8004.1637.1 0.38 +0.3
1,577,235 + Xcc-8004.1637.1 0.38 +0.6
1,577,235 + Xcc-8004.1637.1 0.38 -2.9
1,577,236 - Xcc-8004.1637.1 0.38 +1.6
1,577,236 - Xcc-8004.1637.1 0.38 -0.6
1,577,236 - Xcc-8004.1637.1 0.38 +2.3
1,577,236 - Xcc-8004.1637.1 0.38 -2.8
1,577,280 + Xcc-8004.1637.1 0.47 +0.2
1,577,281 - Xcc-8004.1637.1 0.47 +2.7
1,577,299 - Xcc-8004.1637.1 0.51 -1.1
1,577,328 + Xcc-8004.1637.1 0.56 -0.4
1,577,329 - Xcc-8004.1637.1 0.57 +0.6
1,577,443 + Xcc-8004.1637.1 0.79 -2.6
1,577,444 - Xcc-8004.1637.1 0.79 +1.2
1,577,444 - Xcc-8004.1637.1 0.79 +1.6

Or see this region's nucleotide sequence