Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1613.1 and Xcc-8004.1614.1 are separated by 487 nucleotides Xcc-8004.1614.1 and Xcc-8004.1615.1 are separated by 53 nucleotides Xcc-8004.1615.1 and Xcc-8004.1616.1 overlap by 4 nucleotides Xcc-8004.1616.1 and Xcc-8004.1617.1 are separated by 194 nucleotides
Xcc-8004.1613.1: Xcc-8004.1613.1 - FIG01210154: hypothetical protein, at 1,555,229 to 1,555,480
Xcc-8004.1613.1
Xcc-8004.1614.1: Xcc-8004.1614.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,555,968 to 1,556,330
Xcc-8004.1614.1
Xcc-8004.1615.1: Xcc-8004.1615.1 - 3-dehydroquinate synthase (EC 4.2.3.4), at 1,556,384 to 1,557,496
Xcc-8004.1615.1
Xcc-8004.1616.1: Xcc-8004.1616.1 - Shikimate kinase I (EC 2.7.1.71), at 1,557,493 to 1,558,035
Xcc-8004.1616.1
Xcc-8004.1617.1: Xcc-8004.1617.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,558,230 to 1,558,829
Xcc-8004.1617.1
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -2
-1
0
1 at 1555.431 kb on + strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.491 kb on + strand at 1555.619 kb on - strand at 1556.921 kb on + strand, within Xcc-8004.1615.1 at 1556.922 kb on - strand, within Xcc-8004.1615.1 at 1556.922 kb on - strand, within Xcc-8004.1615.1 at 1557.337 kb on - strand, within Xcc-8004.1615.1 at 1557.444 kb on + strand at 1557.444 kb on + strand at 1557.504 kb on + strand at 1557.731 kb on + strand, within Xcc-8004.1616.1 at 1557.732 kb on - strand, within Xcc-8004.1616.1 at 1558.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,555,431 + Xcc-8004.1613.1 0.80 -0.9 1,555,432 - Xcc-8004.1613.1 0.81 +0.4 1,555,432 - Xcc-8004.1613.1 0.81 +0.1 1,555,432 - Xcc-8004.1613.1 0.81 +1.5 1,555,491 + +0.1 1,555,619 - +0.5 1,556,921 + Xcc-8004.1615.1 0.48 -2.0 1,556,922 - Xcc-8004.1615.1 0.48 +0.3 1,556,922 - Xcc-8004.1615.1 0.48 -2.6 1,557,337 - Xcc-8004.1615.1 0.86 -0.9 1,557,444 + -1.2 1,557,444 + +1.3 1,557,504 + -2.3 1,557,731 + Xcc-8004.1616.1 0.44 -2.1 1,557,732 - Xcc-8004.1616.1 0.44 -2.2 1,558,049 - -2.5
Or see this region's nucleotide sequence