Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1573.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
1,509,064	+				-1.0
1,509,065	-				-0.4
1,509,065	-				+0.5
1,509,128	+				-1.9
1,509,128	+				-0.7
1,509,128	+				+0.7
1,509,129	-				-1.6
1,509,129	-				+1.4
1,509,294	+				+3.3
1,509,294	+				+0.9
1,509,295	-				+0.3
1,509,378	+				+1.4
1,509,379	-				-0.2
1,509,379	-				-2.7
1,509,445	+				-0.7
1,509,445	+				+1.5
1,509,446	-				+0.4
1,509,446	-				-1.0
1,509,446	-				+0.1
1,509,446	-				-1.9
1,509,449	+				-0.0
1,509,449	+				+2.0
1,509,449	+				-0.7
1,509,449	+				-0.0
1,509,450	-				+4.6
1,509,453	+				+1.0
1,509,453	+				-0.6
1,509,561	+				+0.5
1,509,561	+				-0.0
1,509,561	+				+2.3
1,509,562	-				+0.7
1,509,562	-				+1.3
1,509,580	+				+0.2
1,509,701	+				-1.9
1,509,702	-				-0.0
1,509,785	+				-0.6
1,509,845	+				+1.0
1,509,845	+				+0.7
1,509,846	-				-1.6
1,509,846	-				+0.3
1,509,855	+				-0.3
1,509,855	+				-2.9
1,509,855	+				-0.3
1,509,855	+				-1.8
1,509,856	-				-0.5
1,509,856	-				-1.2
1,509,856	-				+1.0
1,510,026	+				-0.9
1,510,230	-		Xcc-8004.1573.1	0.18	+1.3
1,510,230	-		Xcc-8004.1573.1	0.18	-2.0
1,510,301	+		Xcc-8004.1573.1	0.23	-0.4
1,510,301	+		Xcc-8004.1573.1	0.23	-1.2
1,510,301	+		Xcc-8004.1573.1	0.23	-3.0
1,510,302	-		Xcc-8004.1573.1	0.23	-1.4
1,510,302	-		Xcc-8004.1573.1	0.23	-3.3
1,510,302	-		Xcc-8004.1573.1	0.23	-2.3
1,510,302	-		Xcc-8004.1573.1	0.23	-0.2
1,510,302	-		Xcc-8004.1573.1	0.23	+0.1
1,510,302	-		Xcc-8004.1573.1	0.23	-1.3
1,510,302	-		Xcc-8004.1573.1	0.23	+1.0
1,510,302	-		Xcc-8004.1573.1	0.23	-2.5
1,510,490	+		Xcc-8004.1573.1	0.37	-1.6
1,510,491	-		Xcc-8004.1573.1	0.37	-0.7
1,510,493	+		Xcc-8004.1573.1	0.37	-1.4
1,510,493	+		Xcc-8004.1573.1	0.37	+0.1
1,510,493	+		Xcc-8004.1573.1	0.37	+0.7
1,510,493	+		Xcc-8004.1573.1	0.37	-0.6
1,510,494	-		Xcc-8004.1573.1	0.37	-0.5
1,510,643	+		Xcc-8004.1573.1	0.48	+3.3
1,510,643	+		Xcc-8004.1573.1	0.48	-2.0
1,510,643	+		Xcc-8004.1573.1	0.48	+0.8
1,510,644	-		Xcc-8004.1573.1	0.48	-0.1
1,510,644	-		Xcc-8004.1573.1	0.48	-1.2
1,510,703	+		Xcc-8004.1573.1	0.52	-0.7
1,510,703	+		Xcc-8004.1573.1	0.52	-1.3
1,510,704	-		Xcc-8004.1573.1	0.52	-3.4
1,510,709	+		Xcc-8004.1573.1	0.52	-2.6
1,510,709	+		Xcc-8004.1573.1	0.52	-1.4
1,510,709	+		Xcc-8004.1573.1	0.52	-1.8
1,510,709	+		Xcc-8004.1573.1	0.52	+0.5
1,510,709	+		Xcc-8004.1573.1	0.52	-2.1
1,510,709	+		Xcc-8004.1573.1	0.52	-1.3
1,510,709	+		Xcc-8004.1573.1	0.52	-0.7
1,510,710	-		Xcc-8004.1573.1	0.53	-2.5
1,510,710	-		Xcc-8004.1573.1	0.53	-1.5
1,510,710	-		Xcc-8004.1573.1	0.53	-1.0
1,510,710	-		Xcc-8004.1573.1	0.53	-2.5
1,510,769	+		Xcc-8004.1573.1	0.57	-2.5
1,510,895	+		Xcc-8004.1573.1	0.66	+1.5
1,510,895	+		Xcc-8004.1573.1	0.66	+1.1
1,510,896	-		Xcc-8004.1573.1	0.66	+0.3
1,510,896	-		Xcc-8004.1573.1	0.66	-0.4
1,510,896	-		Xcc-8004.1573.1	0.66	-1.6
1,511,099	-		Xcc-8004.1573.1	0.81	-1.4
1,511,099	-		Xcc-8004.1573.1	0.81	+0.5
1,511,111	+		Xcc-8004.1573.1	0.82	-0.7
1,511,112	-		Xcc-8004.1573.1	0.82	-0.7
1,511,112	-		Xcc-8004.1573.1	0.82	-1.8
1,511,112	-		Xcc-8004.1573.1	0.82	-3.9
1,511,112	-		Xcc-8004.1573.1	0.82	+3.0
1,511,250	+				+0.7
1,511,250	+				-0.5
1,511,250	+				-0.6
1,511,251	-				-0.5
1,511,353	+				+0.7
1,511,353	+				-1.2
1,511,400	+				+0.8
1,511,401	-				+2.9
1,511,419	-				+0.3
1,511,451	+				-0.3
1,511,460	+				+0.3
1,511,460	+				-1.6
1,511,460	+				+2.3
1,511,461	-				-1.7
1,511,582	-				+2.6
1,511,797	+				+0.5
1,511,797	+				-1.0
1,511,797	+				+1.7
1,511,797	+				-1.3
1,511,798	-				+0.3
1,511,821	+				-0.8
1,511,822	-				-2.2
1,511,822	-				+1.4
1,511,824	+				+0.3
1,511,824	+				+0.8
1,511,824	+				-0.1
1,511,825	-				-1.3
1,511,825	-				+0.3
1,511,955	+		Xcc-8004.1575.1	0.18	+0.4
1,511,996	-		Xcc-8004.1575.1	0.21	-0.3
1,511,996	-		Xcc-8004.1575.1	0.21	+0.5
1,512,044	+		Xcc-8004.1575.1	0.25	-0.7
1,512,044	+		Xcc-8004.1575.1	0.25	-0.5
1,512,045	-		Xcc-8004.1575.1	0.25	-3.7
1,512,046	+		Xcc-8004.1575.1	0.25	-2.2
1,512,046	+		Xcc-8004.1575.1	0.25	+0.7
1,512,047	-		Xcc-8004.1575.1	0.25	-0.3
1,512,057	+		Xcc-8004.1575.1	0.26	+0.4
1,512,079	+		Xcc-8004.1575.1	0.27	-1.5
1,512,079	+		Xcc-8004.1575.1	0.27	+0.3
1,512,079	+		Xcc-8004.1575.1	0.27	+0.9
1,512,079	+		Xcc-8004.1575.1	0.27	-1.1
1,512,079	+		Xcc-8004.1575.1	0.27	-0.4
1,512,079	+		Xcc-8004.1575.1	0.27	+1.3
1,512,079	+		Xcc-8004.1575.1	0.27	-1.0
1,512,079	+		Xcc-8004.1575.1	0.27	-0.9
1,512,079	+		Xcc-8004.1575.1	0.27	-2.1
1,512,080	-		Xcc-8004.1575.1	0.28	-1.9
1,512,080	-		Xcc-8004.1575.1	0.28	-1.0
1,512,080	-		Xcc-8004.1575.1	0.28	-0.1
1,512,080	-		Xcc-8004.1575.1	0.28	-1.1
1,512,080	-		Xcc-8004.1575.1	0.28	-1.0
1,512,080	-		Xcc-8004.1575.1	0.28	+0.9
1,512,080	-		Xcc-8004.1575.1	0.28	-2.3
1,512,080	-		Xcc-8004.1575.1	0.28	+0.3
1,512,080	-		Xcc-8004.1575.1	0.28	-1.5
1,512,080	-		Xcc-8004.1575.1	0.28	-1.1
1,512,080	-		Xcc-8004.1575.1	0.28	+0.9
1,512,214	+		Xcc-8004.1575.1	0.37	+0.4
1,512,214	+		Xcc-8004.1575.1	0.37	+0.3
1,512,214	+		Xcc-8004.1575.1	0.37	-2.3
1,512,214	+		Xcc-8004.1575.1	0.37	+0.5
1,512,214	+		Xcc-8004.1575.1	0.37	-1.8
1,512,215	-		Xcc-8004.1575.1	0.37	+2.3
1,512,215	-		Xcc-8004.1575.1	0.37	+0.1
1,512,223	+		Xcc-8004.1575.1	0.38	-0.9
1,512,224	-		Xcc-8004.1575.1	0.38	-0.7
1,512,224	-		Xcc-8004.1575.1	0.38	-1.5
1,512,224	-		Xcc-8004.1575.1	0.38	-1.4
1,512,225	+		Xcc-8004.1575.1	0.38	-1.9
1,512,226	-		Xcc-8004.1575.1	0.38	-0.9
1,512,348	-		Xcc-8004.1575.1	0.47	-3.0