Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1053.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1050.1 and Xcc-8004.1052.1 are separated by 32 nucleotidesXcc-8004.1052.1 and Xcc-8004.1053.1 overlap by 29 nucleotidesXcc-8004.1053.1 and Xcc-8004.1055.1 are separated by 236 nucleotides Xcc-8004.1050.1: Xcc-8004.1050.1 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 1,003,520 to 1,004,269 Xcc-8004.1050.1 Xcc-8004.1052.1: Xcc-8004.1052.1 - hypothetical protein, at 1,004,302 to 1,005,051 Xcc-8004.1052.1 Xcc-8004.1053.1: Xcc-8004.1053.1 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,005,023 to 1,006,162 Xcc-8004.1053.1 Xcc-8004.1055.1: Xcc-8004.1055.1 - hypothetical protein, at 1,006,399 to 1,007,040 Xcc-8004.1055.1 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1004.121 kb on - strand, within Xcc-8004.1050.1at 1004.274 kb on + strandat 1004.274 kb on + strandat 1004.275 kb on - strandat 1004.347 kb on + strandat 1004.347 kb on + strandat 1004.572 kb on - strand, within Xcc-8004.1052.1at 1004.616 kb on + strand, within Xcc-8004.1052.1at 1004.809 kb on + strand, within Xcc-8004.1052.1at 1004.810 kb on - strand, within Xcc-8004.1052.1at 1004.858 kb on + strand, within Xcc-8004.1052.1at 1004.859 kb on - strand, within Xcc-8004.1052.1at 1004.859 kb on - strand, within Xcc-8004.1052.1at 1004.987 kb on - strandat 1005.230 kb on + strand, within Xcc-8004.1053.1at 1005.240 kb on - strand, within Xcc-8004.1053.1at 1005.510 kb on - strand, within Xcc-8004.1053.1at 1005.564 kb on - strand, within Xcc-8004.1053.1at 1005.578 kb on + strand, within Xcc-8004.1053.1at 1005.579 kb on - strand, within Xcc-8004.1053.1at 1005.749 kb on - strand, within Xcc-8004.1053.1at 1005.752 kb on + strand, within Xcc-8004.1053.1at 1005.752 kb on + strand, within Xcc-8004.1053.1at 1005.752 kb on + strand, within Xcc-8004.1053.1at 1005.752 kb on + strand, within Xcc-8004.1053.1at 1005.753 kb on - strand, within Xcc-8004.1053.1at 1005.753 kb on - strand, within Xcc-8004.1053.1at 1005.860 kb on - strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.917 kb on + strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1005.918 kb on - strand, within Xcc-8004.1053.1at 1006.010 kb on + strand, within Xcc-8004.1053.1at 1006.347 kb on + strandat 1006.348 kb on - strandat 1006.348 kb on - strandat 1006.359 kb on + strandat 1006.359 kb on + strandat 1006.360 kb on - strandat 1006.360 kb on - strandat 1006.571 kb on + strand, within Xcc-8004.1055.1at 1006.572 kb on - strand, within Xcc-8004.1055.1at 1006.572 kb on - strand, within Xcc-8004.1055.1at 1006.588 kb on - strand, within Xcc-8004.1055.1at 1006.652 kb on + strand, within Xcc-8004.1055.1at 1006.670 kb on + strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.674 kb on + strand, within Xcc-8004.1055.1at 1006.747 kb on - strand, within Xcc-8004.1055.1at 1006.771 kb on - strand, within Xcc-8004.1055.1at 1006.956 kb on - strand, within Xcc-8004.1055.1at 1006.956 kb on - strand, within Xcc-8004.1055.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,004,121 - Xcc-8004.1050.1 0.80 -3.3
1,004,274 + +1.7
1,004,274 + -1.6
1,004,275 - -2.0
1,004,347 + +0.3
1,004,347 + +1.8
1,004,572 - Xcc-8004.1052.1 0.36 -0.7
1,004,616 + Xcc-8004.1052.1 0.42 +1.6
1,004,809 + Xcc-8004.1052.1 0.68 -0.0
1,004,810 - Xcc-8004.1052.1 0.68 -1.4
1,004,858 + Xcc-8004.1052.1 0.74 -1.6
1,004,859 - Xcc-8004.1052.1 0.74 +0.6
1,004,859 - Xcc-8004.1052.1 0.74 +0.3
1,004,987 - -1.0
1,005,230 + Xcc-8004.1053.1 0.18 -2.3
1,005,240 - Xcc-8004.1053.1 0.19 -0.8
1,005,510 - Xcc-8004.1053.1 0.43 +0.3
1,005,564 - Xcc-8004.1053.1 0.47 -3.1
1,005,578 + Xcc-8004.1053.1 0.49 -2.1
1,005,579 - Xcc-8004.1053.1 0.49 -2.7
1,005,749 - Xcc-8004.1053.1 0.64 -2.4
1,005,752 + Xcc-8004.1053.1 0.64 -2.2
1,005,752 + Xcc-8004.1053.1 0.64 -1.0
1,005,752 + Xcc-8004.1053.1 0.64 +0.3
1,005,752 + Xcc-8004.1053.1 0.64 -2.4
1,005,753 - Xcc-8004.1053.1 0.64 -1.5
1,005,753 - Xcc-8004.1053.1 0.64 -2.5
1,005,860 - Xcc-8004.1053.1 0.73 -2.1
1,005,917 + Xcc-8004.1053.1 0.78 -1.2
1,005,917 + Xcc-8004.1053.1 0.78 -2.1
1,005,917 + Xcc-8004.1053.1 0.78 -2.2
1,005,917 + Xcc-8004.1053.1 0.78 +0.8
1,005,917 + Xcc-8004.1053.1 0.78 -2.6
1,005,917 + Xcc-8004.1053.1 0.78 -0.2
1,005,917 + Xcc-8004.1053.1 0.78 -3.0
1,005,917 + Xcc-8004.1053.1 0.78 -1.2
1,005,918 - Xcc-8004.1053.1 0.79 +0.3
1,005,918 - Xcc-8004.1053.1 0.79 -1.2
1,005,918 - Xcc-8004.1053.1 0.79 +1.3
1,005,918 - Xcc-8004.1053.1 0.79 -1.0
1,005,918 - Xcc-8004.1053.1 0.79 -2.5
1,005,918 - Xcc-8004.1053.1 0.79 +0.8
1,005,918 - Xcc-8004.1053.1 0.79 -3.4
1,005,918 - Xcc-8004.1053.1 0.79 -1.4
1,006,010 + Xcc-8004.1053.1 0.87 +0.3
1,006,347 + -2.0
1,006,348 - -2.5
1,006,348 - +0.8
1,006,359 + -1.8
1,006,359 + -2.9
1,006,360 - +0.8
1,006,360 - +0.8
1,006,571 + Xcc-8004.1055.1 0.27 -0.1
1,006,572 - Xcc-8004.1055.1 0.27 -0.9
1,006,572 - Xcc-8004.1055.1 0.27 -1.2
1,006,588 - Xcc-8004.1055.1 0.29 +1.5
1,006,652 + Xcc-8004.1055.1 0.39 +1.0
1,006,670 + Xcc-8004.1055.1 0.42 +0.3
1,006,671 - Xcc-8004.1055.1 0.42 -0.7
1,006,671 - Xcc-8004.1055.1 0.42 +1.0
1,006,671 - Xcc-8004.1055.1 0.42 +1.0
1,006,674 + Xcc-8004.1055.1 0.43 +0.0
1,006,747 - Xcc-8004.1055.1 0.54 -1.1
1,006,771 - Xcc-8004.1055.1 0.58 +0.9
1,006,956 - Xcc-8004.1055.1 0.87 -1.0
1,006,956 - Xcc-8004.1055.1 0.87 -0.5

Or see this region's nucleotide sequence