Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1015.1 and Xcc-8004.1016.1 are separated by 294 nucleotides Xcc-8004.1016.1 and Xcc-8004.1017.1 are separated by 33 nucleotides
Xcc-8004.1015.1: Xcc-8004.1015.1 - ThiJ/PfpI family protein, at 959,547 to 960,227
Xcc-8004.1015.1
Xcc-8004.1016.1: Xcc-8004.1016.1 - Sucrose phosphorylase (EC 2.4.1.7), at 960,522 to 962,435
Xcc-8004.1016.1
Xcc-8004.1017.1: Xcc-8004.1017.1 - Predicted sucrose-specific TonB-dependent receptor, at 962,469 to 964,925
Xcc-8004.1017.1
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.638 kb on - strand, within Xcc-8004.1015.1 at 959.638 kb on - strand, within Xcc-8004.1015.1 at 959.640 kb on + strand, within Xcc-8004.1015.1 at 959.640 kb on + strand, within Xcc-8004.1015.1 at 959.640 kb on + strand, within Xcc-8004.1015.1 at 959.641 kb on - strand, within Xcc-8004.1015.1 at 959.792 kb on + strand, within Xcc-8004.1015.1 at 959.793 kb on - strand, within Xcc-8004.1015.1 at 960.109 kb on - strand, within Xcc-8004.1015.1 at 960.353 kb on - strand at 960.364 kb on - strand at 960.364 kb on - strand at 960.405 kb on + strand at 960.406 kb on - strand at 960.445 kb on + strand at 960.550 kb on + strand at 960.811 kb on + strand, within Xcc-8004.1016.1 at 960.818 kb on + strand, within Xcc-8004.1016.1 at 960.819 kb on - strand, within Xcc-8004.1016.1 at 960.819 kb on - strand, within Xcc-8004.1016.1 at 960.922 kb on + strand, within Xcc-8004.1016.1 at 960.923 kb on - strand, within Xcc-8004.1016.1 at 961.148 kb on - strand, within Xcc-8004.1016.1 at 961.274 kb on - strand, within Xcc-8004.1016.1 at 961.274 kb on - strand, within Xcc-8004.1016.1 at 961.694 kb on - strand, within Xcc-8004.1016.1 at 961.700 kb on - strand, within Xcc-8004.1016.1 at 961.792 kb on + strand, within Xcc-8004.1016.1 at 961.792 kb on + strand, within Xcc-8004.1016.1 at 961.793 kb on - strand, within Xcc-8004.1016.1 at 961.828 kb on + strand, within Xcc-8004.1016.1 at 961.829 kb on - strand, within Xcc-8004.1016.1 at 961.829 kb on - strand, within Xcc-8004.1016.1 at 961.999 kb on + strand, within Xcc-8004.1016.1 at 962.093 kb on - strand, within Xcc-8004.1016.1 at 962.143 kb on + strand, within Xcc-8004.1016.1 at 962.143 kb on + strand, within Xcc-8004.1016.1 at 962.153 kb on - strand, within Xcc-8004.1016.1 at 962.153 kb on - strand, within Xcc-8004.1016.1 at 962.279 kb on - strand at 962.297 kb on - strand at 962.297 kb on - strand at 962.359 kb on - strand at 962.471 kb on - strand at 962.479 kb on + strand at 962.480 kb on - strand at 962.579 kb on + strand at 962.580 kb on - strand at 962.580 kb on - strand at 962.695 kb on + strand at 962.695 kb on + strand at 962.696 kb on - strand at 962.696 kb on - strand at 962.920 kb on + strand, within Xcc-8004.1017.1 at 962.920 kb on + strand, within Xcc-8004.1017.1 at 962.920 kb on + strand, within Xcc-8004.1017.1 at 962.920 kb on + strand, within Xcc-8004.1017.1 at 962.924 kb on + strand, within Xcc-8004.1017.1 at 962.925 kb on - strand, within Xcc-8004.1017.1 at 963.175 kb on + strand, within Xcc-8004.1017.1 at 963.175 kb on + strand, within Xcc-8004.1017.1 at 963.202 kb on + strand, within Xcc-8004.1017.1 at 963.202 kb on + strand, within Xcc-8004.1017.1 at 963.202 kb on + strand, within Xcc-8004.1017.1 at 963.407 kb on - strand, within Xcc-8004.1017.1 at 963.425 kb on - strand, within Xcc-8004.1017.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 959,638 - Xcc-8004.1015.1 0.13 +1.0 959,638 - Xcc-8004.1015.1 0.13 +2.9 959,640 + Xcc-8004.1015.1 0.14 -1.7 959,640 + Xcc-8004.1015.1 0.14 +0.5 959,640 + Xcc-8004.1015.1 0.14 +1.1 959,641 - Xcc-8004.1015.1 0.14 +1.9 959,792 + Xcc-8004.1015.1 0.36 +0.5 959,793 - Xcc-8004.1015.1 0.36 +1.3 960,109 - Xcc-8004.1015.1 0.83 +2.0 960,353 - -1.1 960,364 - -2.5 960,364 - +1.2 960,405 + -0.2 960,406 - -0.8 960,445 + -0.4 960,550 + -2.6 960,811 + Xcc-8004.1016.1 0.15 -1.4 960,818 + Xcc-8004.1016.1 0.15 +0.4 960,819 - Xcc-8004.1016.1 0.16 -2.3 960,819 - Xcc-8004.1016.1 0.16 +0.0 960,922 + Xcc-8004.1016.1 0.21 -1.3 960,923 - Xcc-8004.1016.1 0.21 -1.8 961,148 - Xcc-8004.1016.1 0.33 -2.3 961,274 - Xcc-8004.1016.1 0.39 +0.7 961,274 - Xcc-8004.1016.1 0.39 -0.8 961,694 - Xcc-8004.1016.1 0.61 -1.1 961,700 - Xcc-8004.1016.1 0.62 -3.0 961,792 + Xcc-8004.1016.1 0.66 -1.7 961,792 + Xcc-8004.1016.1 0.66 -2.0 961,793 - Xcc-8004.1016.1 0.66 -1.8 961,828 + Xcc-8004.1016.1 0.68 -1.0 961,829 - Xcc-8004.1016.1 0.68 -1.9 961,829 - Xcc-8004.1016.1 0.68 -0.3 961,999 + Xcc-8004.1016.1 0.77 -2.3 962,093 - Xcc-8004.1016.1 0.82 -0.8 962,143 + Xcc-8004.1016.1 0.85 -3.1 962,143 + Xcc-8004.1016.1 0.85 +0.7 962,153 - Xcc-8004.1016.1 0.85 -1.6 962,153 - Xcc-8004.1016.1 0.85 -0.3 962,279 - -2.4 962,297 - -3.6 962,297 - -1.3 962,359 - -1.8 962,471 - +0.7 962,479 + +1.2 962,480 - -0.8 962,579 + -2.3 962,580 - +0.7 962,580 - -0.1 962,695 + -3.0 962,695 + +0.0 962,696 - -0.8 962,696 - -0.5 962,920 + Xcc-8004.1017.1 0.18 -0.5 962,920 + Xcc-8004.1017.1 0.18 +2.3 962,920 + Xcc-8004.1017.1 0.18 -1.0 962,920 + Xcc-8004.1017.1 0.18 -1.4 962,924 + Xcc-8004.1017.1 0.19 +0.0 962,925 - Xcc-8004.1017.1 0.19 +1.7 963,175 + Xcc-8004.1017.1 0.29 -1.1 963,175 + Xcc-8004.1017.1 0.29 -2.6 963,202 + Xcc-8004.1017.1 0.30 +0.8 963,202 + Xcc-8004.1017.1 0.30 +0.2 963,202 + Xcc-8004.1017.1 0.30 +2.2 963,407 - Xcc-8004.1017.1 0.38 -0.7 963,425 - Xcc-8004.1017.1 0.39 +1.9
Or see this region's nucleotide sequence