Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5074.1 and Xcc-8004.5075.1 overlap by 1 nucleotides Xcc-8004.5075.1 and Xcc-8004.5076.1 overlap by 4 nucleotides Xcc-8004.5076.1 and Xcc-8004.5077.1 overlap by 4 nucleotides
Xcc-8004.5074.1: Xcc-8004.5074.1 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,815,391 to 4,816,587
Xcc-8004.5074.1
Xcc-8004.5075.1: Xcc-8004.5075.1 - 3-oxoacyl-[ACP] synthase, at 4,816,587 to 4,817,360
Xcc-8004.5075.1
Xcc-8004.5076.1: Xcc-8004.5076.1 - FIG143263: Glycosyl transferase @ Dolichyl-phosphate mannose synthase related protein, at 4,817,357 to 4,818,178
Xcc-8004.5076.1
Xcc-8004.5077.1: Xcc-8004.5077.1 - FIG022199: FAD-binding protein, at 4,818,175 to 4,819,800
Xcc-8004.5077.1
Position (kb) 4817
4818
4819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4816.519 kb on + strand at 4816.519 kb on + strand at 4816.520 kb on - strand at 4816.822 kb on + strand, within Xcc-8004.5075.1 at 4816.822 kb on + strand, within Xcc-8004.5075.1 at 4816.822 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.860 kb on + strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4816.861 kb on - strand, within Xcc-8004.5075.1 at 4817.316 kb on + strand at 4817.316 kb on + strand at 4817.316 kb on + strand at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.456 kb on + strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.457 kb on - strand, within Xcc-8004.5076.1 at 4817.838 kb on - strand, within Xcc-8004.5076.1 at 4818.084 kb on - strand, within Xcc-8004.5076.1 at 4818.139 kb on + strand at 4818.139 kb on + strand at 4818.139 kb on + strand at 4818.355 kb on + strand, within Xcc-8004.5077.1 at 4818.355 kb on + strand, within Xcc-8004.5077.1 at 4818.356 kb on - strand, within Xcc-8004.5077.1 at 4818.431 kb on - strand, within Xcc-8004.5077.1 at 4818.577 kb on - strand, within Xcc-8004.5077.1 at 4819.081 kb on + strand, within Xcc-8004.5077.1 at 4819.156 kb on + strand, within Xcc-8004.5077.1 at 4819.157 kb on - strand, within Xcc-8004.5077.1 at 4819.157 kb on - strand, within Xcc-8004.5077.1 at 4819.157 kb on - strand, within Xcc-8004.5077.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,816,519 + -2.2 4,816,519 + -0.4 4,816,520 - -1.0 4,816,822 + Xcc-8004.5075.1 0.30 -0.8 4,816,822 + Xcc-8004.5075.1 0.30 +0.7 4,816,822 + Xcc-8004.5075.1 0.30 -0.1 4,816,860 + Xcc-8004.5075.1 0.35 -0.1 4,816,860 + Xcc-8004.5075.1 0.35 +1.0 4,816,860 + Xcc-8004.5075.1 0.35 -1.3 4,816,860 + Xcc-8004.5075.1 0.35 -0.3 4,816,860 + Xcc-8004.5075.1 0.35 -1.5 4,816,860 + Xcc-8004.5075.1 0.35 -2.0 4,816,860 + Xcc-8004.5075.1 0.35 +0.2 4,816,860 + Xcc-8004.5075.1 0.35 +0.9 4,816,860 + Xcc-8004.5075.1 0.35 +0.1 4,816,860 + Xcc-8004.5075.1 0.35 -0.8 4,816,861 - Xcc-8004.5075.1 0.35 +0.6 4,816,861 - Xcc-8004.5075.1 0.35 -2.0 4,816,861 - Xcc-8004.5075.1 0.35 -0.3 4,816,861 - Xcc-8004.5075.1 0.35 -0.2 4,816,861 - Xcc-8004.5075.1 0.35 -1.9 4,816,861 - Xcc-8004.5075.1 0.35 +1.6 4,816,861 - Xcc-8004.5075.1 0.35 -2.2 4,817,316 + +2.4 4,817,316 + -1.0 4,817,316 + -2.1 4,817,456 + Xcc-8004.5076.1 0.12 -0.8 4,817,456 + Xcc-8004.5076.1 0.12 -0.6 4,817,456 + Xcc-8004.5076.1 0.12 -3.1 4,817,456 + Xcc-8004.5076.1 0.12 -1.3 4,817,456 + Xcc-8004.5076.1 0.12 -1.8 4,817,456 + Xcc-8004.5076.1 0.12 -0.2 4,817,456 + Xcc-8004.5076.1 0.12 +0.4 4,817,456 + Xcc-8004.5076.1 0.12 -0.1 4,817,456 + Xcc-8004.5076.1 0.12 +0.2 4,817,456 + Xcc-8004.5076.1 0.12 +0.2 4,817,457 - Xcc-8004.5076.1 0.12 -0.2 4,817,457 - Xcc-8004.5076.1 0.12 -1.8 4,817,457 - Xcc-8004.5076.1 0.12 -0.3 4,817,457 - Xcc-8004.5076.1 0.12 +1.5 4,817,457 - Xcc-8004.5076.1 0.12 -1.4 4,817,457 - Xcc-8004.5076.1 0.12 +1.5 4,817,838 - Xcc-8004.5076.1 0.59 +0.6 4,818,084 - Xcc-8004.5076.1 0.88 -1.6 4,818,139 + -0.2 4,818,139 + +0.1 4,818,139 + -0.5 4,818,355 + Xcc-8004.5077.1 0.11 -0.1 4,818,355 + Xcc-8004.5077.1 0.11 -0.7 4,818,356 - Xcc-8004.5077.1 0.11 -2.1 4,818,431 - Xcc-8004.5077.1 0.16 -0.9 4,818,577 - Xcc-8004.5077.1 0.25 +0.2 4,819,081 + Xcc-8004.5077.1 0.56 +0.2 4,819,156 + Xcc-8004.5077.1 0.60 +0.1 4,819,157 - Xcc-8004.5077.1 0.60 -0.1 4,819,157 - Xcc-8004.5077.1 0.60 +0.2 4,819,157 - Xcc-8004.5077.1 0.60 +1.8
Or see this region's nucleotide sequence