Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.484.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.483.1 and Xcc-8004.484.1 are separated by 15 nucleotidesXcc-8004.484.1 and Xcc-8004.485.1 are separated by 151 nucleotides Xcc-8004.483.1: Xcc-8004.483.1 - Hydrolase, at 445,735 to 446,661 Xcc-8004.483.1 Xcc-8004.484.1: Xcc-8004.484.1 - Pca regulon regulatory protein PcaR, at 446,677 to 447,537 Xcc-8004.484.1 Xcc-8004.485.1: Xcc-8004.485.1 - FIG01209899: hypothetical protein, at 447,689 to 448,546 Xcc-8004.485.1 Position (kb) 446 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 445.686 kb on + strandat 445.687 kb on - strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.777 kb on - strandat 445.777 kb on - strandat 446.017 kb on + strand, within Xcc-8004.483.1at 446.017 kb on + strand, within Xcc-8004.483.1at 446.017 kb on + strand, within Xcc-8004.483.1at 446.018 kb on - strand, within Xcc-8004.483.1at 446.164 kb on + strand, within Xcc-8004.483.1at 446.165 kb on - strand, within Xcc-8004.483.1at 446.236 kb on + strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.366 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.966 kb on + strand, within Xcc-8004.484.1at 446.966 kb on + strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.245 kb on + strand, within Xcc-8004.484.1at 447.246 kb on - strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.569 kb on + strandat 447.569 kb on + strandat 447.570 kb on - strandat 447.648 kb on - strandat 447.648 kb on - strandat 447.782 kb on + strand, within Xcc-8004.485.1at 447.782 kb on + strand, within Xcc-8004.485.1at 447.783 kb on - strand, within Xcc-8004.485.1at 447.783 kb on - strand, within Xcc-8004.485.1at 447.783 kb on - strand, within Xcc-8004.485.1at 447.824 kb on + strand, within Xcc-8004.485.1at 447.824 kb on + strand, within Xcc-8004.485.1at 447.824 kb on + strand, within Xcc-8004.485.1at 447.824 kb on + strand, within Xcc-8004.485.1at 447.824 kb on + strand, within Xcc-8004.485.1at 447.825 kb on - strand, within Xcc-8004.485.1at 447.867 kb on - strand, within Xcc-8004.485.1at 447.867 kb on - strand, within Xcc-8004.485.1at 447.983 kb on + strand, within Xcc-8004.485.1at 447.983 kb on + strand, within Xcc-8004.485.1at 447.984 kb on - strand, within Xcc-8004.485.1at 448.028 kb on + strand, within Xcc-8004.485.1at 448.202 kb on + strand, within Xcc-8004.485.1at 448.203 kb on - strand, within Xcc-8004.485.1at 448.350 kb on + strand, within Xcc-8004.485.1at 448.351 kb on - strand, within Xcc-8004.485.1at 448.351 kb on - strand, within Xcc-8004.485.1at 448.358 kb on + strand, within Xcc-8004.485.1at 448.358 kb on + strand, within Xcc-8004.485.1at 448.358 kb on + strand, within Xcc-8004.485.1at 448.358 kb on + strand, within Xcc-8004.485.1at 448.358 kb on + strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.359 kb on - strand, within Xcc-8004.485.1at 448.362 kb on - strand, within Xcc-8004.485.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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445,686 + -0.8
445,687 - +1.2
445,742 + -1.7
445,742 + +0.6
445,742 + -1.7
445,742 + -3.3
445,742 + +1.2
445,743 - +0.4
445,743 - +0.7
445,743 - +0.2
445,743 - -2.0
445,743 - -0.9
445,743 - +0.2
445,743 - +1.0
445,776 + -0.8
445,776 + -2.7
445,776 + -0.1
445,776 + -0.8
445,777 - +1.3
445,777 - -0.5
446,017 + Xcc-8004.483.1 0.30 +0.3
446,017 + Xcc-8004.483.1 0.30 +1.1
446,017 + Xcc-8004.483.1 0.30 +1.2
446,018 - Xcc-8004.483.1 0.31 -0.2
446,164 + Xcc-8004.483.1 0.46 -0.7
446,165 - Xcc-8004.483.1 0.46 +0.4
446,236 + Xcc-8004.483.1 0.54 -0.6
446,237 - Xcc-8004.483.1 0.54 +1.1
446,237 - Xcc-8004.483.1 0.54 -0.9
446,237 - Xcc-8004.483.1 0.54 +0.6
446,237 - Xcc-8004.483.1 0.54 +1.6
446,366 + Xcc-8004.483.1 0.68 -0.3
446,377 + Xcc-8004.483.1 0.69 +0.1
446,377 + Xcc-8004.483.1 0.69 +2.0
446,377 + Xcc-8004.483.1 0.69 -0.3
446,377 + Xcc-8004.483.1 0.69 +1.6
446,377 + Xcc-8004.483.1 0.69 +2.0
446,377 + Xcc-8004.483.1 0.69 +0.7
446,378 - Xcc-8004.483.1 0.69 +0.3
446,378 - Xcc-8004.483.1 0.69 -0.8
446,378 - Xcc-8004.483.1 0.69 -0.3
446,378 - Xcc-8004.483.1 0.69 +0.4
446,966 + Xcc-8004.484.1 0.34 +0.3
446,966 + Xcc-8004.484.1 0.34 -0.0
446,967 - Xcc-8004.484.1 0.34 -0.3
446,967 - Xcc-8004.484.1 0.34 -1.3
446,967 - Xcc-8004.484.1 0.34 -0.2
447,095 + Xcc-8004.484.1 0.49 -1.0
447,095 + Xcc-8004.484.1 0.49 -0.3
447,095 + Xcc-8004.484.1 0.49 -0.7
447,096 - Xcc-8004.484.1 0.49 +0.3
447,096 - Xcc-8004.484.1 0.49 -0.8
447,096 - Xcc-8004.484.1 0.49 -0.6
447,096 - Xcc-8004.484.1 0.49 -0.3
447,096 - Xcc-8004.484.1 0.49 -1.1
447,096 - Xcc-8004.484.1 0.49 -2.3
447,206 + Xcc-8004.484.1 0.61 -1.7
447,206 + Xcc-8004.484.1 0.61 +0.9
447,206 + Xcc-8004.484.1 0.61 -0.6
447,206 + Xcc-8004.484.1 0.61 -0.8
447,206 + Xcc-8004.484.1 0.61 -0.7
447,207 - Xcc-8004.484.1 0.62 +0.2
447,207 - Xcc-8004.484.1 0.62 -0.0
447,207 - Xcc-8004.484.1 0.62 -0.2
447,207 - Xcc-8004.484.1 0.62 -0.0
447,207 - Xcc-8004.484.1 0.62 +2.3
447,245 + Xcc-8004.484.1 0.66 +1.1
447,246 - Xcc-8004.484.1 0.66 +0.1
447,269 + Xcc-8004.484.1 0.69 -1.9
447,269 + Xcc-8004.484.1 0.69 +0.7
447,269 + Xcc-8004.484.1 0.69 -2.6
447,269 + Xcc-8004.484.1 0.69 -0.1
447,270 - Xcc-8004.484.1 0.69 -0.1
447,270 - Xcc-8004.484.1 0.69 -0.1
447,270 - Xcc-8004.484.1 0.69 -0.6
447,270 - Xcc-8004.484.1 0.69 -2.4
447,270 - Xcc-8004.484.1 0.69 +0.1
447,270 - Xcc-8004.484.1 0.69 +0.5
447,270 - Xcc-8004.484.1 0.69 +0.6
447,569 + +0.4
447,569 + -0.8
447,570 - -2.1
447,648 - -2.7
447,648 - +0.4
447,782 + Xcc-8004.485.1 0.11 -0.1
447,782 + Xcc-8004.485.1 0.11 -0.2
447,783 - Xcc-8004.485.1 0.11 +0.9
447,783 - Xcc-8004.485.1 0.11 -0.2
447,783 - Xcc-8004.485.1 0.11 +0.2
447,824 + Xcc-8004.485.1 0.16 -1.4
447,824 + Xcc-8004.485.1 0.16 +2.0
447,824 + Xcc-8004.485.1 0.16 -0.6
447,824 + Xcc-8004.485.1 0.16 -0.1
447,824 + Xcc-8004.485.1 0.16 +0.2
447,825 - Xcc-8004.485.1 0.16 +0.1
447,867 - Xcc-8004.485.1 0.21 -1.7
447,867 - Xcc-8004.485.1 0.21 -0.8
447,983 + Xcc-8004.485.1 0.34 -1.1
447,983 + Xcc-8004.485.1 0.34 -1.3
447,984 - Xcc-8004.485.1 0.34 +2.4
448,028 + Xcc-8004.485.1 0.40 +0.1
448,202 + Xcc-8004.485.1 0.60 -0.8
448,203 - Xcc-8004.485.1 0.60 -1.0
448,350 + Xcc-8004.485.1 0.77 +1.7
448,351 - Xcc-8004.485.1 0.77 -0.6
448,351 - Xcc-8004.485.1 0.77 +0.9
448,358 + Xcc-8004.485.1 0.78 +1.4
448,358 + Xcc-8004.485.1 0.78 +1.5
448,358 + Xcc-8004.485.1 0.78 +0.2
448,358 + Xcc-8004.485.1 0.78 -0.8
448,358 + Xcc-8004.485.1 0.78 +0.4
448,359 - Xcc-8004.485.1 0.78 +1.3
448,359 - Xcc-8004.485.1 0.78 -0.4
448,359 - Xcc-8004.485.1 0.78 -0.3
448,359 - Xcc-8004.485.1 0.78 +0.4
448,359 - Xcc-8004.485.1 0.78 +1.0
448,359 - Xcc-8004.485.1 0.78 -0.2
448,362 - Xcc-8004.485.1 0.78 +0.2

Or see this region's nucleotide sequence