Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4734.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4732.1 and Xcc-8004.4733.1 are separated by 139 nucleotidesXcc-8004.4733.1 and Xcc-8004.4734.1 are separated by 245 nucleotidesXcc-8004.4734.1 and Xcc-8004.4735.1 are separated by 37 nucleotidesXcc-8004.4735.1 and Xcc-8004.4736.1 overlap by 4 nucleotides Xcc-8004.4732.1: Xcc-8004.4732.1 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 4,502,054 to 4,503,034 Xcc-8004.4732.1 Xcc-8004.4733.1: Xcc-8004.4733.1 - Phosphinothricin N-acetyltransferase (EC 2.3.1.-), at 4,503,174 to 4,503,695 Xcc-8004.4733.1 Xcc-8004.4734.1: Xcc-8004.4734.1 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 4,503,941 to 4,505,074 Xcc-8004.4734.1 Xcc-8004.4735.1: Xcc-8004.4735.1 - FIG01210211: hypothetical protein, at 4,505,112 to 4,505,690 Xcc-8004.4735.1 Xcc-8004.4736.1: Xcc-8004.4736.1 - Possibly related to ydbT, at 4,505,687 to 4,507,189 Xcc-8004.4736.1 Position (kb) 4503 4504 4505 4506Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4502.948 kb on + strandat 4502.949 kb on - strandat 4502.960 kb on + strandat 4502.960 kb on + strandat 4502.960 kb on + strandat 4502.960 kb on + strandat 4502.960 kb on + strandat 4502.960 kb on + strandat 4502.961 kb on - strandat 4502.961 kb on - strandat 4502.961 kb on - strandat 4502.961 kb on - strandat 4503.008 kb on + strandat 4503.156 kb on + strandat 4503.157 kb on - strandat 4503.157 kb on - strandat 4503.157 kb on - strandat 4503.217 kb on + strandat 4503.217 kb on + strandat 4503.217 kb on + strandat 4503.217 kb on + strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.218 kb on - strandat 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.433 kb on + strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.434 kb on - strand, within Xcc-8004.4733.1at 4503.454 kb on + strand, within Xcc-8004.4733.1at 4503.454 kb on + strand, within Xcc-8004.4733.1at 4503.454 kb on + strand, within Xcc-8004.4733.1at 4503.454 kb on + strand, within Xcc-8004.4733.1at 4503.454 kb on + strand, within Xcc-8004.4733.1at 4503.455 kb on - strand, within Xcc-8004.4733.1at 4503.455 kb on - strand, within Xcc-8004.4733.1at 4503.488 kb on - strand, within Xcc-8004.4733.1at 4503.488 kb on - strand, within Xcc-8004.4733.1at 4503.488 kb on - strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.607 kb on + strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.608 kb on - strand, within Xcc-8004.4733.1at 4503.727 kb on - strandat 4503.727 kb on - strandat 4503.825 kb on + strandat 4503.825 kb on + strandat 4503.825 kb on + strandat 4503.826 kb on - strandat 4505.072 kb on + strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.111 kb on + strandat 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.260 kb on + strand, within Xcc-8004.4735.1at 4505.260 kb on + strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.346 kb on + strand, within Xcc-8004.4735.1at 4505.347 kb on - strand, within Xcc-8004.4735.1at 4505.372 kb on - strand, within Xcc-8004.4735.1at 4505.576 kb on + strand, within Xcc-8004.4735.1at 4505.894 kb on + strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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4,502,948 + -0.8
4,502,949 - +0.6
4,502,960 + +0.2
4,502,960 + -1.3
4,502,960 + -0.3
4,502,960 + -1.4
4,502,960 + +0.7
4,502,960 + -1.8
4,502,961 - +0.0
4,502,961 - -1.7
4,502,961 - +0.2
4,502,961 - -1.6
4,503,008 + -0.1
4,503,156 + +1.1
4,503,157 - -1.6
4,503,157 - +1.3
4,503,157 - +0.1
4,503,217 + -0.2
4,503,217 + -0.8
4,503,217 + -2.3
4,503,217 + +0.2
4,503,218 - -0.0
4,503,218 - +0.2
4,503,218 - -0.4
4,503,218 - -0.6
4,503,218 - -0.3
4,503,218 - +0.5
4,503,218 - +1.2
4,503,433 + Xcc-8004.4733.1 0.50 -0.6
4,503,433 + Xcc-8004.4733.1 0.50 -0.2
4,503,433 + Xcc-8004.4733.1 0.50 +0.7
4,503,433 + Xcc-8004.4733.1 0.50 -0.8
4,503,433 + Xcc-8004.4733.1 0.50 -1.5
4,503,433 + Xcc-8004.4733.1 0.50 -1.4
4,503,433 + Xcc-8004.4733.1 0.50 +1.3
4,503,434 - Xcc-8004.4733.1 0.50 -1.4
4,503,434 - Xcc-8004.4733.1 0.50 -2.9
4,503,434 - Xcc-8004.4733.1 0.50 +1.5
4,503,434 - Xcc-8004.4733.1 0.50 -0.7
4,503,434 - Xcc-8004.4733.1 0.50 -0.5
4,503,434 - Xcc-8004.4733.1 0.50 +0.7
4,503,434 - Xcc-8004.4733.1 0.50 -1.8
4,503,454 + Xcc-8004.4733.1 0.54 -1.4
4,503,454 + Xcc-8004.4733.1 0.54 -2.3
4,503,454 + Xcc-8004.4733.1 0.54 +0.6
4,503,454 + Xcc-8004.4733.1 0.54 +0.2
4,503,454 + Xcc-8004.4733.1 0.54 +2.7
4,503,455 - Xcc-8004.4733.1 0.54 -0.5
4,503,455 - Xcc-8004.4733.1 0.54 -0.1
4,503,488 - Xcc-8004.4733.1 0.60 -1.8
4,503,488 - Xcc-8004.4733.1 0.60 -1.0
4,503,488 - Xcc-8004.4733.1 0.60 +0.4
4,503,607 + Xcc-8004.4733.1 0.83 -1.3
4,503,607 + Xcc-8004.4733.1 0.83 -2.8
4,503,607 + Xcc-8004.4733.1 0.83 +0.7
4,503,607 + Xcc-8004.4733.1 0.83 -2.0
4,503,607 + Xcc-8004.4733.1 0.83 +1.2
4,503,607 + Xcc-8004.4733.1 0.83 +0.2
4,503,608 - Xcc-8004.4733.1 0.83 +0.0
4,503,608 - Xcc-8004.4733.1 0.83 -0.1
4,503,608 - Xcc-8004.4733.1 0.83 -2.2
4,503,608 - Xcc-8004.4733.1 0.83 +1.2
4,503,608 - Xcc-8004.4733.1 0.83 +0.9
4,503,608 - Xcc-8004.4733.1 0.83 +0.3
4,503,727 - +3.7
4,503,727 - -0.2
4,503,825 + -1.7
4,503,825 + +0.4
4,503,825 + -2.4
4,503,826 - +1.0
4,505,072 + -0.9
4,505,073 - +0.2
4,505,073 - +3.1
4,505,073 - -2.2
4,505,073 - -0.5
4,505,111 + +0.9
4,505,256 + Xcc-8004.4735.1 0.25 +1.7
4,505,256 + Xcc-8004.4735.1 0.25 +0.2
4,505,256 + Xcc-8004.4735.1 0.25 +2.1
4,505,256 + Xcc-8004.4735.1 0.25 +0.9
4,505,256 + Xcc-8004.4735.1 0.25 +0.6
4,505,257 - Xcc-8004.4735.1 0.25 -0.1
4,505,257 - Xcc-8004.4735.1 0.25 -0.2
4,505,257 - Xcc-8004.4735.1 0.25 +2.4
4,505,257 - Xcc-8004.4735.1 0.25 +1.2
4,505,257 - Xcc-8004.4735.1 0.25 +1.3
4,505,257 - Xcc-8004.4735.1 0.25 -0.2
4,505,257 - Xcc-8004.4735.1 0.25 -1.6
4,505,257 - Xcc-8004.4735.1 0.25 -0.5
4,505,260 + Xcc-8004.4735.1 0.26 +1.2
4,505,260 + Xcc-8004.4735.1 0.26 -0.3
4,505,261 - Xcc-8004.4735.1 0.26 +0.6
4,505,261 - Xcc-8004.4735.1 0.26 +0.7
4,505,261 - Xcc-8004.4735.1 0.26 -1.4
4,505,346 + Xcc-8004.4735.1 0.40 -3.0
4,505,347 - Xcc-8004.4735.1 0.41 -1.3
4,505,372 - Xcc-8004.4735.1 0.45 -0.6
4,505,576 + Xcc-8004.4735.1 0.80 +3.1
4,505,894 + Xcc-8004.4736.1 0.14 +0.3
4,505,895 - Xcc-8004.4736.1 0.14 -1.9
4,505,895 - Xcc-8004.4736.1 0.14 +1.9
4,505,895 - Xcc-8004.4736.1 0.14 -0.1
4,505,903 + Xcc-8004.4736.1 0.14 +0.6
4,505,903 + Xcc-8004.4736.1 0.14 -1.8
4,505,903 + Xcc-8004.4736.1 0.14 +0.4
4,505,903 + Xcc-8004.4736.1 0.14 +0.0
4,505,903 + Xcc-8004.4736.1 0.14 -0.3
4,505,903 + Xcc-8004.4736.1 0.14 -2.7
4,505,903 + Xcc-8004.4736.1 0.14 -0.9
4,505,903 + Xcc-8004.4736.1 0.14 +0.3
4,505,903 + Xcc-8004.4736.1 0.14 +1.7
4,505,903 + Xcc-8004.4736.1 0.14 +0.9
4,505,904 - Xcc-8004.4736.1 0.14 -1.2
4,505,904 - Xcc-8004.4736.1 0.14 -0.8
4,505,904 - Xcc-8004.4736.1 0.14 -1.2
4,505,904 - Xcc-8004.4736.1 0.14 +0.1

Or see this region's nucleotide sequence