Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4648.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4647.1 and Xcc-8004.4648.1 are separated by 518 nucleotidesXcc-8004.4648.1 and Xcc-8004.4649.1 are separated by 104 nucleotidesXcc-8004.4649.1 and Xcc-8004.4650.1 are separated by 111 nucleotides Xcc-8004.4647.1: Xcc-8004.4647.1 - tryptophan repressor binding protein, at 4,426,414 to 4,426,983 Xcc-8004.4647.1 Xcc-8004.4648.1: Xcc-8004.4648.1 - Oxidoreductase, at 4,427,502 to 4,428,497 Xcc-8004.4648.1 Xcc-8004.4649.1: Xcc-8004.4649.1 - Glycosyl transferase, family 2, at 4,428,602 to 4,429,297 Xcc-8004.4649.1 Xcc-8004.4650.1: Xcc-8004.4650.1 - Metallopeptidase, at 4,429,409 to 4,431,514 Xcc-8004.4650.1 Position (kb) 4427 4428 4429Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4426.517 kb on - strand, within Xcc-8004.4647.1at 4426.517 kb on - strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.747 kb on + strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4427.035 kb on + strandat 4427.035 kb on + strandat 4427.035 kb on + strandat 4427.036 kb on - strandat 4427.036 kb on - strandat 4427.036 kb on - strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.208 kb on - strandat 4427.208 kb on - strandat 4427.445 kb on + strandat 4427.446 kb on - strandat 4427.446 kb on - strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.581 kb on - strandat 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.809 kb on - strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1at 4428.036 kb on + strand, within Xcc-8004.4648.1at 4428.036 kb on + strand, within Xcc-8004.4648.1at 4428.114 kb on + strand, within Xcc-8004.4648.1at 4428.114 kb on + strand, within Xcc-8004.4648.1at 4428.114 kb on + strand, within Xcc-8004.4648.1at 4428.184 kb on - strand, within Xcc-8004.4648.1at 4428.361 kb on - strand, within Xcc-8004.4648.1at 4428.361 kb on - strand, within Xcc-8004.4648.1at 4428.361 kb on - strand, within Xcc-8004.4648.1at 4428.698 kb on + strand, within Xcc-8004.4649.1at 4428.698 kb on + strand, within Xcc-8004.4649.1at 4428.698 kb on + strand, within Xcc-8004.4649.1at 4428.699 kb on - strand, within Xcc-8004.4649.1at 4428.863 kb on - strand, within Xcc-8004.4649.1at 4429.086 kb on - strand, within Xcc-8004.4649.1at 4429.088 kb on + strand, within Xcc-8004.4649.1at 4429.089 kb on - strand, within Xcc-8004.4649.1at 4429.280 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.371 kb on + strandat 4429.372 kb on - strandat 4429.372 kb on - strandat 4429.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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4,426,517 - Xcc-8004.4647.1 0.18 +1.6
4,426,517 - Xcc-8004.4647.1 0.18 +0.7
4,426,588 + Xcc-8004.4647.1 0.31 -0.5
4,426,588 + Xcc-8004.4647.1 0.31 -0.1
4,426,588 + Xcc-8004.4647.1 0.31 -0.9
4,426,588 + Xcc-8004.4647.1 0.31 -1.4
4,426,589 - Xcc-8004.4647.1 0.31 +0.2
4,426,589 - Xcc-8004.4647.1 0.31 +0.5
4,426,589 - Xcc-8004.4647.1 0.31 -1.1
4,426,589 - Xcc-8004.4647.1 0.31 -1.4
4,426,589 - Xcc-8004.4647.1 0.31 -1.3
4,426,589 - Xcc-8004.4647.1 0.31 +0.2
4,426,589 - Xcc-8004.4647.1 0.31 -1.7
4,426,589 - Xcc-8004.4647.1 0.31 -0.5
4,426,589 - Xcc-8004.4647.1 0.31 +0.5
4,426,603 + Xcc-8004.4647.1 0.33 +1.1
4,426,603 + Xcc-8004.4647.1 0.33 -3.0
4,426,603 + Xcc-8004.4647.1 0.33 -0.7
4,426,603 + Xcc-8004.4647.1 0.33 -0.0
4,426,603 + Xcc-8004.4647.1 0.33 -0.1
4,426,603 + Xcc-8004.4647.1 0.33 +1.5
4,426,604 - Xcc-8004.4647.1 0.33 -0.4
4,426,604 - Xcc-8004.4647.1 0.33 -0.7
4,426,604 - Xcc-8004.4647.1 0.33 -0.0
4,426,604 - Xcc-8004.4647.1 0.33 -0.4
4,426,604 - Xcc-8004.4647.1 0.33 +1.1
4,426,604 - Xcc-8004.4647.1 0.33 +1.4
4,426,732 + Xcc-8004.4647.1 0.56 -2.2
4,426,732 + Xcc-8004.4647.1 0.56 -0.2
4,426,732 + Xcc-8004.4647.1 0.56 +3.2
4,426,733 - Xcc-8004.4647.1 0.56 -2.3
4,426,733 - Xcc-8004.4647.1 0.56 +1.7
4,426,733 - Xcc-8004.4647.1 0.56 +0.8
4,426,733 - Xcc-8004.4647.1 0.56 -0.7
4,426,733 - Xcc-8004.4647.1 0.56 +0.5
4,426,733 - Xcc-8004.4647.1 0.56 +1.3
4,426,733 - Xcc-8004.4647.1 0.56 +1.0
4,426,733 - Xcc-8004.4647.1 0.56 -0.1
4,426,733 - Xcc-8004.4647.1 0.56 +0.1
4,426,747 + Xcc-8004.4647.1 0.58 +1.7
4,426,748 - Xcc-8004.4647.1 0.59 -0.2
4,426,748 - Xcc-8004.4647.1 0.59 +1.3
4,426,748 - Xcc-8004.4647.1 0.59 -0.4
4,426,748 - Xcc-8004.4647.1 0.59 -0.4
4,426,748 - Xcc-8004.4647.1 0.59 -0.6
4,427,035 + +0.2
4,427,035 + -0.6
4,427,035 + +0.3
4,427,036 - -0.9
4,427,036 - +0.5
4,427,036 - -0.4
4,427,081 + -0.9
4,427,081 + -2.4
4,427,081 + -0.2
4,427,081 + -1.1
4,427,081 + -0.8
4,427,081 + -2.3
4,427,082 - -0.4
4,427,082 - -1.7
4,427,082 - -0.6
4,427,082 - -1.0
4,427,082 - +2.8
4,427,208 - +0.1
4,427,208 - -0.2
4,427,445 + +0.5
4,427,446 - -1.1
4,427,446 - +1.2
4,427,580 + +1.5
4,427,580 + -1.6
4,427,580 + -3.8
4,427,580 + -0.4
4,427,581 - +1.7
4,427,670 + Xcc-8004.4648.1 0.17 -0.3
4,427,670 + Xcc-8004.4648.1 0.17 -0.1
4,427,670 + Xcc-8004.4648.1 0.17 +1.2
4,427,670 + Xcc-8004.4648.1 0.17 +1.0
4,427,670 + Xcc-8004.4648.1 0.17 +0.1
4,427,670 + Xcc-8004.4648.1 0.17 +0.1
4,427,671 - Xcc-8004.4648.1 0.17 +1.4
4,427,671 - Xcc-8004.4648.1 0.17 -0.3
4,427,671 - Xcc-8004.4648.1 0.17 -0.1
4,427,671 - Xcc-8004.4648.1 0.17 -0.4
4,427,671 - Xcc-8004.4648.1 0.17 -1.3
4,427,671 - Xcc-8004.4648.1 0.17 -2.5
4,427,671 - Xcc-8004.4648.1 0.17 -0.0
4,427,671 - Xcc-8004.4648.1 0.17 +1.3
4,427,671 - Xcc-8004.4648.1 0.17 +0.6
4,427,671 - Xcc-8004.4648.1 0.17 +0.7
4,427,809 - Xcc-8004.4648.1 0.31 -0.1
4,427,868 + Xcc-8004.4648.1 0.37 -0.0
4,427,868 + Xcc-8004.4648.1 0.37 -0.6
4,427,868 + Xcc-8004.4648.1 0.37 +3.6
4,427,869 - Xcc-8004.4648.1 0.37 -0.9
4,427,869 - Xcc-8004.4648.1 0.37 -0.7
4,427,869 - Xcc-8004.4648.1 0.37 -0.6
4,427,871 + Xcc-8004.4648.1 0.37 +0.2
4,427,871 + Xcc-8004.4648.1 0.37 +0.8
4,427,871 + Xcc-8004.4648.1 0.37 -1.4
4,428,036 + Xcc-8004.4648.1 0.54 -0.5
4,428,036 + Xcc-8004.4648.1 0.54 +2.3
4,428,114 + Xcc-8004.4648.1 0.61 +0.6
4,428,114 + Xcc-8004.4648.1 0.61 +0.1
4,428,114 + Xcc-8004.4648.1 0.61 +1.6
4,428,184 - Xcc-8004.4648.1 0.68 -1.8
4,428,361 - Xcc-8004.4648.1 0.86 +2.1
4,428,361 - Xcc-8004.4648.1 0.86 +1.2
4,428,361 - Xcc-8004.4648.1 0.86 +1.4
4,428,698 + Xcc-8004.4649.1 0.14 +1.1
4,428,698 + Xcc-8004.4649.1 0.14 -0.2
4,428,698 + Xcc-8004.4649.1 0.14 -0.9
4,428,699 - Xcc-8004.4649.1 0.14 +0.1
4,428,863 - Xcc-8004.4649.1 0.38 +0.7
4,429,086 - Xcc-8004.4649.1 0.70 +2.4
4,429,088 + Xcc-8004.4649.1 0.70 -0.7
4,429,089 - Xcc-8004.4649.1 0.70 -1.2
4,429,280 + +1.3
4,429,371 + +1.7
4,429,371 + +0.5
4,429,371 + +1.2
4,429,371 + -0.8
4,429,371 + -0.6
4,429,371 + +0.1
4,429,371 + -0.1
4,429,372 - -0.6
4,429,372 - -0.4
4,429,372 - -2.1

Or see this region's nucleotide sequence