Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4637.1 and Xcc-8004.4638.1 overlap by 4 nucleotides Xcc-8004.4638.1 and Xcc-8004.4639.1 are separated by 412 nucleotides
Xcc-8004.4637.1: Xcc-8004.4637.1 - ABC-type multidrug transport system, permease component, at 4,415,719 to 4,416,480
Xcc-8004.4637.1
Xcc-8004.4638.1: Xcc-8004.4638.1 - ABC-type multidrug transport system, ATPase component, at 4,416,477 to 4,417,421
Xcc-8004.4638.1
Xcc-8004.4639.1: Xcc-8004.4639.1 - Na+/H+ antiporter, at 4,417,834 to 4,419,471
Xcc-8004.4639.1
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4415.834 kb on + strand, within Xcc-8004.4637.1 at 4415.834 kb on + strand, within Xcc-8004.4637.1 at 4415.835 kb on - strand, within Xcc-8004.4637.1 at 4415.864 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.925 kb on - strand, within Xcc-8004.4637.1 at 4415.925 kb on - strand, within Xcc-8004.4637.1 at 4416.165 kb on - strand, within Xcc-8004.4637.1 at 4416.165 kb on - strand, within Xcc-8004.4637.1 at 4416.212 kb on + strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.367 kb on + strand, within Xcc-8004.4637.1 at 4416.368 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1 at 4416.453 kb on - strand at 4416.453 kb on - strand at 4416.640 kb on + strand, within Xcc-8004.4638.1 at 4416.640 kb on + strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.641 kb on - strand, within Xcc-8004.4638.1 at 4416.844 kb on + strand, within Xcc-8004.4638.1 at 4416.844 kb on + strand, within Xcc-8004.4638.1 at 4416.844 kb on + strand, within Xcc-8004.4638.1 at 4416.844 kb on + strand, within Xcc-8004.4638.1 at 4416.845 kb on - strand, within Xcc-8004.4638.1 at 4416.845 kb on - strand, within Xcc-8004.4638.1 at 4416.845 kb on - strand, within Xcc-8004.4638.1 at 4416.845 kb on - strand, within Xcc-8004.4638.1 at 4417.081 kb on + strand, within Xcc-8004.4638.1 at 4417.081 kb on + strand, within Xcc-8004.4638.1 at 4417.081 kb on + strand, within Xcc-8004.4638.1 at 4417.381 kb on + strand at 4417.381 kb on + strand at 4417.381 kb on + strand at 4417.485 kb on + strand at 4417.485 kb on + strand at 4417.485 kb on + strand at 4417.486 kb on - strand at 4417.486 kb on - strand at 4417.486 kb on - strand at 4417.486 kb on - strand at 4417.646 kb on + strand at 4417.646 kb on + strand at 4417.646 kb on + strand at 4417.680 kb on + strand at 4417.680 kb on + strand at 4417.680 kb on + strand at 4417.680 kb on + strand at 4417.680 kb on + strand at 4417.681 kb on - strand at 4417.681 kb on - strand at 4417.681 kb on - strand at 4417.681 kb on - strand at 4417.687 kb on - strand at 4417.752 kb on + strand at 4417.752 kb on + strand at 4417.752 kb on + strand at 4417.753 kb on - strand at 4417.753 kb on - strand at 4417.786 kb on + strand at 4417.786 kb on + strand at 4417.786 kb on + strand at 4417.787 kb on - strand at 4417.787 kb on - strand at 4417.787 kb on - strand at 4418.045 kb on + strand, within Xcc-8004.4639.1 at 4418.046 kb on - strand, within Xcc-8004.4639.1 at 4418.046 kb on - strand, within Xcc-8004.4639.1 at 4418.078 kb on + strand, within Xcc-8004.4639.1 at 4418.078 kb on + strand, within Xcc-8004.4639.1 at 4418.079 kb on - strand, within Xcc-8004.4639.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,415,834 + Xcc-8004.4637.1 0.15 +0.6 4,415,834 + Xcc-8004.4637.1 0.15 -0.4 4,415,835 - Xcc-8004.4637.1 0.15 -0.0 4,415,864 + Xcc-8004.4637.1 0.19 -0.8 4,415,924 + Xcc-8004.4637.1 0.27 -0.1 4,415,924 + Xcc-8004.4637.1 0.27 +0.8 4,415,924 + Xcc-8004.4637.1 0.27 +0.6 4,415,924 + Xcc-8004.4637.1 0.27 +1.0 4,415,925 - Xcc-8004.4637.1 0.27 -0.7 4,415,925 - Xcc-8004.4637.1 0.27 -0.3 4,416,165 - Xcc-8004.4637.1 0.59 -0.5 4,416,165 - Xcc-8004.4637.1 0.59 +1.0 4,416,212 + Xcc-8004.4637.1 0.65 -0.5 4,416,213 - Xcc-8004.4637.1 0.65 -0.2 4,416,213 - Xcc-8004.4637.1 0.65 +0.3 4,416,213 - Xcc-8004.4637.1 0.65 -0.3 4,416,239 + Xcc-8004.4637.1 0.68 +0.9 4,416,239 + Xcc-8004.4637.1 0.68 +0.1 4,416,239 + Xcc-8004.4637.1 0.68 +0.6 4,416,240 - Xcc-8004.4637.1 0.68 -0.9 4,416,240 - Xcc-8004.4637.1 0.68 -0.3 4,416,240 - Xcc-8004.4637.1 0.68 +0.7 4,416,240 - Xcc-8004.4637.1 0.68 +1.5 4,416,240 - Xcc-8004.4637.1 0.68 +0.6 4,416,367 + Xcc-8004.4637.1 0.85 +1.0 4,416,368 - Xcc-8004.4637.1 0.85 +0.7 4,416,378 - Xcc-8004.4637.1 0.86 +1.1 4,416,378 - Xcc-8004.4637.1 0.86 -0.3 4,416,378 - Xcc-8004.4637.1 0.86 -0.2 4,416,453 - +0.4 4,416,453 - +0.1 4,416,640 + Xcc-8004.4638.1 0.17 +0.2 4,416,640 + Xcc-8004.4638.1 0.17 +0.4 4,416,641 - Xcc-8004.4638.1 0.17 +0.7 4,416,641 - Xcc-8004.4638.1 0.17 +1.2 4,416,641 - Xcc-8004.4638.1 0.17 -1.4 4,416,641 - Xcc-8004.4638.1 0.17 -0.8 4,416,641 - Xcc-8004.4638.1 0.17 +1.7 4,416,641 - Xcc-8004.4638.1 0.17 -0.8 4,416,641 - Xcc-8004.4638.1 0.17 -0.1 4,416,641 - Xcc-8004.4638.1 0.17 -0.1 4,416,641 - Xcc-8004.4638.1 0.17 -0.3 4,416,641 - Xcc-8004.4638.1 0.17 -0.2 4,416,641 - Xcc-8004.4638.1 0.17 +1.7 4,416,641 - Xcc-8004.4638.1 0.17 -0.3 4,416,844 + Xcc-8004.4638.1 0.39 +1.6 4,416,844 + Xcc-8004.4638.1 0.39 +0.7 4,416,844 + Xcc-8004.4638.1 0.39 -0.6 4,416,844 + Xcc-8004.4638.1 0.39 +0.9 4,416,845 - Xcc-8004.4638.1 0.39 +0.5 4,416,845 - Xcc-8004.4638.1 0.39 +0.5 4,416,845 - Xcc-8004.4638.1 0.39 -0.4 4,416,845 - Xcc-8004.4638.1 0.39 -0.4 4,417,081 + Xcc-8004.4638.1 0.64 -0.3 4,417,081 + Xcc-8004.4638.1 0.64 +1.4 4,417,081 + Xcc-8004.4638.1 0.64 +0.5 4,417,381 + -1.4 4,417,381 + -0.3 4,417,381 + +0.7 4,417,485 + +1.1 4,417,485 + +1.2 4,417,485 + -0.8 4,417,486 - -1.3 4,417,486 - -0.8 4,417,486 - -0.7 4,417,486 - +3.3 4,417,646 + +0.2 4,417,646 + -1.6 4,417,646 + -0.7 4,417,680 + -2.0 4,417,680 + -0.4 4,417,680 + +0.1 4,417,680 + -1.2 4,417,680 + -2.0 4,417,681 - +1.9 4,417,681 - -2.2 4,417,681 - +1.1 4,417,681 - -0.8 4,417,687 - +0.5 4,417,752 + -0.2 4,417,752 + +2.2 4,417,752 + +0.3 4,417,753 - -1.7 4,417,753 - -0.4 4,417,786 + -2.4 4,417,786 + -1.2 4,417,786 + -1.7 4,417,787 - -1.0 4,417,787 - +0.4 4,417,787 - +0.1 4,418,045 + Xcc-8004.4639.1 0.13 -0.8 4,418,046 - Xcc-8004.4639.1 0.13 -1.2 4,418,046 - Xcc-8004.4639.1 0.13 -0.3 4,418,078 + Xcc-8004.4639.1 0.15 +1.0 4,418,078 + Xcc-8004.4639.1 0.15 -1.0 4,418,079 - Xcc-8004.4639.1 0.15 -1.5
Or see this region's nucleotide sequence